IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.61   STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2002	 52.90	0	2401231..2401506	-	91	119357859	-	Cpha266_2067	-	hypothetical protein
2003	 47.35	0	2401847..2402602	-	251	119357860	-	Cpha266_2068	-	hypothetical protein
2004	 50.71	0	2402627..2403886	-	419	119357861	-	Cpha266_2069	-	phage integrase family protein
2005	 57.35	+1	2404100..2405527	-	475	119357862	-	Cpha266_2070	-	aldehyde dehydrogenase
2006	 55.42	+1	2405531..2406499	-	322	119357863	-	Cpha266_2071	-	ribosome small subunit-dependent GTPase A
2007	 55.79	+1	2406540..2408663	-	707	119357864	-	Cpha266_2072	-	ATP-dependent DNA helicase RecG
2008	 48.25	0	2408762..2408989	+	75	119357865	rpmE	Cpha266_2073	-	50S ribosomal protein L31
2009	 50.09	0	2409038..2409598	+	186	119357866	-	Cpha266_2074	-	ribosome recycling factor
2010	 55.37	+1	2409751..2410989	-	412	119357867	-	Cpha266_2075	-	chlorophyllide reductase subunit Y
2011	 54.99	+1	2410970..2412022	-	350	119357868	-	Cpha266_2076	-	sporulation domain-containing protein
2012	 53.83	+1	2412040..2412405	-	121	119357869	-	Cpha266_2077	-	hypothetical protein
2013	 56.58	+1	2412468..2413676	+	402	119357870	xseA	Cpha266_2078	-	exodeoxyribonuclease VII large subunit
2014	 55.11	+1	2413654..2414397	-	247	119357871	-	Cpha266_2079	-	3-deoxy-manno-octulosonate cytidylyltransferase
2015	 54.97	+1	2414394..2414846	-	150	119357872	-	Cpha266_2080	-	D-tyrosyl-tRNA(Tyr) deacylase
2016	 51.96	0	2414868..2415173	-	101	119357873	-	Cpha266_2081	-	hypothetical protein
2017	 47.22	0	2415170..2415457	-	95	119357874	gatC	Cpha266_2082	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
2018	 49.40	0	2415525..2416868	-	447	119357875	-	Cpha266_2083	-	citrate synthase
2019	 52.27	0	2417553..2418566	-	337	119357876	-	Cpha266_2084	-	OmpA/MotB domain-containing protein
2020	 50.00	0	2418607..2419356	-	249	119357877	-	Cpha266_2085	-	hypothetical protein
2021	 49.76	0	2419373..2419579	-	68	119357878	-	Cpha266_2086	-	heavy metal transport/detoxification protein
2022	 47.69	0	2419777..2420382	+	201	119357879	-	Cpha266_2087	-	TPR repeat-containing protein
2023	 52.09	0	2420529..2421962	+	477	119357880	-	Cpha266_2088	-	isochorismate synthases
2024	 54.31	+1	2421959..2423722	+	587	119357881	-	Cpha266_2089	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
2025	 49.63	0	2423839..2424642	+	267	119357882	-	Cpha266_2090	-	alpha/beta hydrolase fold
2026	 54.50	+1	2424657..2425478	+	273	119357883	-	Cpha266_2091	-	naphthoate synthase
2027	 51.96	0	2425475..2426548	+	357	119357884	-	Cpha266_2092	-	O-succinylbenzoate-CoA synthase
2028	 53.84	+1	2426536..2427993	+	485	119357885	-	Cpha266_2093	-	O-succinylbenzoate-CoA ligase
2029	 51.42	0	2427965..2428528	-	187	119357886	-	Cpha266_2094	-	hypothetical protein
2030	 52.74	0	2428525..2429271	-	248	119357887	-	Cpha266_2095	-	dihydrodipicolinate reductase
2031	 49.72	0	2429408..2430298	-	296	119357888	-	Cpha266_2096	-	chromosome segregation DNA-binding protein
2032	 47.99	0	2430324..2431121	-	265	119357889	-	Cpha266_2097	-	chromosome segregation ATPase
2033	 50.08	0	2431217..2431807	+	196	119357890	-	Cpha266_2098	-	DNA-3-methyladenine glycosylase
2034	 51.41	0	2431886..2433268	+	460	119357891	-	Cpha266_2099	-	magnesium transporter
2035	 52.42	0	2433348..2434421	+	357	119357892	-	Cpha266_2100	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2036	 50.30	0	2434441..2435112	+	223	119357893	-	Cpha266_2101	-	phospholipase/carboxylesterase
2037	 54.67	+1	2435219..2438968	+	1249	119357894	metH	Cpha266_2102	-	B12-dependent methionine synthase
2038	 50.00	0	2438953..2439204	-	83	119357895	-	Cpha266_2103	-	hypothetical protein
2039	 48.13	0	2439291..2440898	+	535	119357896	-	Cpha266_2104	-	cytochrome c family protein
2040	 47.69	0	2440895..2441500	+	201	119357897	-	Cpha266_2105	-	cytochrome B561
2041	 52.48	0	2441562..2441843	+	93	119357898	-	Cpha266_2106	-	hypothetical protein
2042	 53.35	+1	2442318..2443571	+	417	119357899	-	Cpha266_2107	-	OmpA/MotB domain-containing protein
2043	 49.78	0	2444802..2446193	-	463	119357900	-	Cpha266_2108	-	hypothetical protein
2044	 52.41	0	2446469..2447359	-	296	119357901	-	Cpha266_2109	-	methyltransferase type 11
2045	 50.89	0	2447636..2449207	+	523	119357902	-	Cpha266_2110	-	integrase catalytic subunit
2046	 51.25	0	2449213..2450049	+	278	119357903	-	Cpha266_2111	-	IstB ATP binding domain-containing protein
2047	 53.06	0	2450099..2450965	-	288	119357904	-	Cpha266_2112	-	integrase catalytic subunit
2048	 50.00	0	2450962..2451255	-	97	119357905	-	Cpha266_2113	-	transposase IS3/IS911 family protein
2049	 50.69	0	2451741..2452172	-	143	119357906	-	Cpha266_2114	-	putative thiol-disulphide oxidoreductase DCC
2050	 48.17	0	2452599..2453885	+	428	119357907	-	Cpha266_2115	-	ATPase
2051	 40.38	-1	2453997..2454209	-	70	119357908	-	Cpha266_2116	-	hypothetical protein
2052	 38.82	-2	2454639..2455094	-	151	119357909	-	Cpha266_2117	-	hypothetical protein
2053	 44.89	0	2456148..2456372	-	74	119357910	-	Cpha266_2120	-	AbrB family transcriptional regulator
2054	 51.91	0	2456952..2457737	-	261	119357911	-	Cpha266_2123	-	hypothetical protein
2055	 51.38	0	2457763..2458089	-	108	119357912	-	Cpha266_2124	-	hypothetical protein
2056	 54.05	+1	2459284..2459949	+	221	119357913	-	Cpha266_2126	-	ArsR family transcriptional regulator
2057	 48.99	0	2460033..2460722	+	229	119357914	-	Cpha266_2127	-	methyltransferase type 11
2058	 52.55	0	2460734..2461066	+	110	119357915	-	Cpha266_2128	-	hypothetical protein
2059	 51.18	0	2461192..2461656	-	154	119357916	-	Cpha266_2129	-	hypothetical protein
2060	 51.25	0	2461705..2461983	-	92	119357917	-	Cpha266_2130	-	hypothetical protein
2061	 51.60	0	2462270..2463271	+	333	119357918	-	Cpha266_2131	-	hypothetical protein
2062	 48.62	0	2466177..2467223	+	348	119357919	-	Cpha266_2134	-	transposase and inactivated derivatives
2063	 26.89	-2	2467402..2470149	-	915	119357920	-	Cpha266_2135	-	tetratricopeptide TPR_3
2064	 46.84	0	2471706..2473304	-	532	119357921	-	Cpha266_2136	-	beta-lactamase superfamily hydrolase
2065	 47.70	0	2474317..2474991	-	224	119357922	-	Cpha266_2137	-	MT-A70 family protein
2066	 43.89	-1	2474978..2475280	-	100	119357923	-	Cpha266_2138	-	hypothetical protein
2067	 48.52	0	2476463..2477509	+	348	119357924	-	Cpha266_2139	-	transposase and inactivated derivatives
2068	 53.43	+1	2477556..2478968	-	470	119357925	-	Cpha266_2140	-	hypothetical protein
2069	 48.41	0	2479078..2479548	-	156	119357926	-	Cpha266_2141	-	hypothetical protein
2070	 48.70	0	2479552..2481243	-	563	119357927	-	Cpha266_2142	-	peptidoglycan binding domain-containing protein
2071	 46.64	0	2481243..2481971	-	242	119357928	-	Cpha266_2143	-	hypothetical protein
2072	 54.19	+1	2482321..2482833	+	170	119357929	-	Cpha266_2144	-	hypothetical protein
2073	 54.87	+1	2482890..2483618	-	242	119357930	-	Cpha266_2145	-	hypothetical protein
2074	 47.49	0	2483667..2484323	-	218	119357931	-	Cpha266_2146	-	hypothetical protein
2075	 46.17	0	2484641..2485279	-	212	119357932	-	Cpha266_2147	-	hypothetical protein
2076	 51.84	0	2485520..2487535	+	671	119357933	-	Cpha266_2148	-	transketolase
2077	 53.72	+1	2487550..2488368	+	272	119357934	-	Cpha266_2149	-	6-phosphogluconolactonase
2078	 48.40	0	2488346..2489785	-	479	119357935	-	Cpha266_2150	-	glucose-6-phosphate 1-dehydrogenase
2079	 53.00	0	2489798..2490697	-	299	119357936	-	Cpha266_2151	-	6-phosphogluconate dehydrogenase-like protein
2080	 46.55	0	2490830..2493787	-	985	119357937	-	Cpha266_2152	-	multi-sensor hybrid histidine kinase
2081	 49.88	0	2493816..2495018	-	400	119357938	-	Cpha266_2153	-	hypothetical protein
2082	 47.36	0	2495266..2495985	-	239	119357939	-	Cpha266_2154	-	hypothetical protein
2083	 49.10	0	2496129..2497301	-	390	119357940	-	Cpha266_2155	-	glycosyl transferase, group 1
2084	 48.17	0	2497411..2497875	-	154	119357941	-	Cpha266_2156	-	YbaK/prolyl-tRNA synthetase associated region
2085	 49.61	0	2498034..2498807	-	257	119357942	-	Cpha266_2157	-	patatin
2086	 50.90	0	2498868..2500256	-	462	119357943	-	Cpha266_2158	-	aldehyde dehydrogenase
2087	 50.61	0	2500472..2502283	-	603	119357944	-	Cpha266_2159	-	ABC transporter related
2088	 46.80	0	2502573..2503322	+	249	119357945	-	Cpha266_2160	-	integral membrane protein TerC
2089	 49.47	0	2503547..2504389	+	280	119357946	-	Cpha266_2161	-	UspA domain-containing protein
2090	 48.05	0	2504426..2504860	-	144	119357947	-	Cpha266_2162	-	hypothetical protein
2091	 51.55	0	2504876..2505682	-	268	119357948	-	Cpha266_2163	-	tRNA/rRNA methyltransferase (SpoU)
2092	 48.83	0	2505679..2506536	-	285	119357949	-	Cpha266_2164	-	hypothetical protein
2093	 50.12	0	2506762..2508024	+	420	119357950	-	Cpha266_2165	-	peptidase U32
2094	 50.74	0	2508114..2509193	+	359	119357951	-	Cpha266_2166	-	hydrogenase/sulfur reductase, beta subunit
2095	 54.06	+1	2509247..2510071	+	274	119357952	-	Cpha266_2167	-	oxidoreductase FAD/NAD(P)-binding subunit
2096	 54.77	+1	2510082..2510846	+	254	119357953	-	Cpha266_2168	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
2097	 58.90	+2	2510836..2512110	+	424	119357954	-	Cpha266_2169	-	nickel-dependent hydrogenase, large subunit
2098	 51.67	0	2512178..2512357	+	59	119357955	-	Cpha266_2170	-	hypothetical protein
2099	 57.91	+2	2512371..2512907	+	178	119357956	-	Cpha266_2171	-	hypothetical protein
2100	 57.91	+2	2513410..2513706	-	98	119357957	-	Cpha266_2172	-	hypothetical protein
2101	 51.25	0	2513933..2514769	-	278	119357958	-	Cpha266_2173	-	IstB ATP binding domain-containing protein
48.61	MEAN

4.51	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.