IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1936	 49.45	0	2314410..2315234	-	274	119357793	-	Cpha266_2000	-	short-chain dehydrogenase/reductase SDR
1937	 49.35	0	2315251..2316567	-	438	119357794	-	Cpha266_2001	-	ribulose 1,5-bisphosphate carboxylase large subunit
1938	 47.39	0	2316646..2317527	-	293	119357795	-	Cpha266_2002	-	aldolase
1939	 49.91	0	2317575..2319692	-	705	119357796	-	Cpha266_2003	-	short chain dehydrogenase
1940	 43.06	-1	2319779..2319994	-	71	119357797	-	Cpha266_2004	-	hypothetical protein
1941	 40.93	-1	2320028..2320501	-	157	119357798	-	Cpha266_2005	-	2-vinyl bacteriochlorophyllide hydratase
1942	 48.30	0	2321195..2321722	+	175	119357799	recX	Cpha266_2007	-	recombination regulator RecX
1943	 49.79	0	2321729..2322439	-	236	119357800	-	Cpha266_2008	-	uridylate kinase
1944	 48.44	0	2322531..2323397	-	288	119357801	tsf	Cpha266_2009	-	elongation factor Ts
1945	 49.41	0	2323430..2324188	-	252	119357802	rpsB	Cpha266_2010	-	30S ribosomal protein S2
1946	 51.79	0	2324369..2324758	-	129	119357803	rpsI	Cpha266_2011	-	30S ribosomal protein S9
1947	 46.22	0	2324776..2325225	-	149	119357804	rplM	Cpha266_2012	-	50S ribosomal protein L13
1948	 49.85	0	2325378..2326691	+	437	119357805	engA	Cpha266_2013	-	GTP-binding protein EngA
1949	 49.44	0	2326764..2327837	+	357	119357806	-	Cpha266_2014	-	hypothetical protein
1950	 53.26	+1	2327942..2328202	+	86	119357807	-	Cpha266_2015	-	NifU domain-containing protein
1951	 49.65	0	2328217..2330649	-	810	119357808	-	Cpha266_2016	-	cell divisionFtsK/SpoIIIE
1952	 49.54	0	2330690..2331787	-	365	119357809	-	Cpha266_2017	-	glycine cleavage system T protein
1953	 42.75	-1	2331797..2332051	-	84	119357810	-	Cpha266_2018	-	hypothetical protein
1954	 47.70	0	2332051..2332224	-	57	119357811	-	Cpha266_2019	-	hypothetical protein
1955	 49.92	0	2332221..2332871	-	216	119357812	-	Cpha266_2020	-	hypothetical protein
1956	 55.07	+1	2332903..2333592	-	229	119357813	-	Cpha266_2021	-	hypothetical protein
1957	 48.81	0	2333665..2334252	-	195	119357814	-	Cpha266_2022	-	LemA family protein
1958	 47.32	0	2334331..2336532	-	733	119357815	-	Cpha266_2023	-	metal dependent phosphohydrolase
1959	 51.26	0	2336639..2338696	-	685	119357816	-	Cpha266_2024	-	excinuclease ABC subunit B
1960	 47.69	0	2339043..2341988	+	981	119357817	-	Cpha266_2025	-	peptidase M16 domain-containing protein
1961	 49.40	0	2342046..2343122	+	358	119357818	-	Cpha266_2026	-	permease YjgP/YjgQ family protein
1962	 51.72	0	2343122..2343964	+	280	119357819	-	Cpha266_2027	-	hypothetical protein
1963	 49.44	0	2343961..2344860	-	299	119357820	-	Cpha266_2028	-	RNA polymerase, sigma 32 subunit, RpoH
1964	 52.30	0	2345021..2347735	-	904	119357821	valS	Cpha266_2029	-	valyl-tRNA synthetase
1965	 50.29	0	2347987..2348670	-	227	119357822	-	Cpha266_2030	-	ATP-dependent Clp protease proteolytic subunit ClpP
1966	 48.96	0	2348987..2349562	+	191	119357823	thyX	Cpha266_2031	-	FAD-dependent thymidylate synthase
1967	 49.88	0	2349559..2350398	-	279	119357824	-	Cpha266_2032	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
1968	 49.60	0	2350519..2353290	+	923	119357825	-	Cpha266_2033	-	patatin
1969	 49.68	0	2353360..2354136	+	258	119357826	-	Cpha266_2034	-	exopolyphosphatase / 5'-nucleotidase / 3'-nucleotidase
1970	 48.11	0	2354141..2355832	+	563	119357827	-	Cpha266_2035	-	hypothetical protein
1971	 49.39	0	2355867..2356196	-	109	119357828	-	Cpha266_2036	-	Fis family transcriptional regulator
1972	 48.94	0	2356749..2357312	-	187	119357829	-	Cpha266_2037	-	anthranilate synthase component II
1973	 48.93	0	2357333..2358589	-	418	119357830	-	Cpha266_2038	-	hypothetical protein
1974	 49.35	0	2358592..2359521	-	309	119357831	-	Cpha266_2039	-	diacylglycerol kinase, catalytic region
1975	 46.49	0	2359527..2360096	-	189	119357832	-	Cpha266_2040	-	protein tyrosine phosphatase
1976	 50.89	0	2360515..2362086	+	523	119357833	-	Cpha266_2041	-	integrase catalytic subunit
1977	 51.25	0	2362092..2362928	+	278	119357834	-	Cpha266_2042	-	IstB ATP binding domain-containing protein
1978	 43.51	-1	2363044..2364114	+	356	119357835	-	Cpha266_2043	-	hypothetical protein
1979	 50.37	0	2364700..2365503	-	267	119357836	-	Cpha266_2044	-	CRISPR-associated Cas family protein
1980	 34.08	-2	2365517..2367130	-	537	119357837	-	Cpha266_2045	-	hypothetical protein
1981	 33.84	-2	2367139..2369097	-	652	119357838	-	Cpha266_2046	-	CRISPR-associated RAMP Csm5 family protein
1982	 40.47	-1	2369102..2370166	-	354	119357839	-	Cpha266_2047	-	CRISPR-associated RAMP Csm4 family protein
1983	 38.58	-2	2370177..2371034	-	285	119357840	-	Cpha266_2048	-	CRISPR-associated RAMP Csm3 family protein
1984	 33.33	-2	2371047..2371523	-	158	119357841	-	Cpha266_2049	-	CRISPR-associated Csm2 family protein
1985	 41.76	-1	2371523..2373811	-	762	119357842	-	Cpha266_2050	-	CRISPR-associated Csm1 family protein
1986	 39.90	-1	2374660..2375253	-	197	119357843	-	Cpha266_2051	-	hypothetical protein
1987	 48.52	0	2375738..2376310	-	190	119357844	-	Cpha266_2052	-	hypothetical protein
1988	 45.49	0	2376349..2377212	-	287	119357845	-	Cpha266_2053	-	hypothetical protein
1989	 52.55	0	2379403..2381598	-	731	119357846	-	Cpha266_2054	-	CRISPR-associated Cas1 family protein
1990	 47.37	0	2381639..2381923	-	94	119357847	-	Cpha266_2055	-	CRISPR-associated Cas2 family protein
1991	 50.00	0	2384620..2384907	-	95	119357848	-	Cpha266_2056	-	hypothetical protein
1992	 47.53	0	2384904..2385551	-	215	119357849	-	Cpha266_2057	-	hypothetical protein
1993	 29.28	-2	2386427..2388055	-	542	119357850	-	Cpha266_2058	-	RelA/SpoT domain-containing protein
1994	 48.07	0	2389059..2389499	-	146	119357851	-	Cpha266_2059	-	glyoxalase/bleomycin resistance protein/dioxygenase
1995	 54.81	+1	2392525..2392794	-	89	119357852	-	Cpha266_2060	-	CRISPR-associated Cas2 family protein
1996	 55.27	+1	2392804..2393847	-	347	119357853	-	Cpha266_2061	-	CRISPR-associated Cas1 family protein
1997	 54.99	+1	2393840..2394841	-	333	119357854	-	Cpha266_2062	-	hypothetical protein
1998	 52.22	0	2396580..2396849	-	89	119357855	-	Cpha266_2063	-	hypothetical protein
1999	 43.09	-1	2396880..2397422	-	180	119357856	-	Cpha266_2064	-	hypothetical protein
2000	 54.79	+1	2398449..2399324	-	291	119357857	-	Cpha266_2065	-	hypothetical protein
2001	 54.42	+1	2399324..2401234	-	636	119357858	-	Cpha266_2066	-	hypothetical protein
2002	 52.90	0	2401231..2401506	-	91	119357859	-	Cpha266_2067	-	hypothetical protein
2003	 47.35	0	2401847..2402602	-	251	119357860	-	Cpha266_2068	-	hypothetical protein
2004	 50.71	0	2402627..2403886	-	419	119357861	-	Cpha266_2069	-	phage integrase family protein
2005	 57.35	+1	2404100..2405527	-	475	119357862	-	Cpha266_2070	-	aldehyde dehydrogenase
2006	 55.42	+1	2405531..2406499	-	322	119357863	-	Cpha266_2071	-	ribosome small subunit-dependent GTPase A
2007	 55.79	+1	2406540..2408663	-	707	119357864	-	Cpha266_2072	-	ATP-dependent DNA helicase RecG
2008	 48.25	0	2408762..2408989	+	75	119357865	rpmE	Cpha266_2073	-	50S ribosomal protein L31
2009	 50.09	0	2409038..2409598	+	186	119357866	-	Cpha266_2074	-	ribosome recycling factor
2010	 55.37	+1	2409751..2410989	-	412	119357867	-	Cpha266_2075	-	chlorophyllide reductase subunit Y
2011	 54.99	+1	2410970..2412022	-	350	119357868	-	Cpha266_2076	-	sporulation domain-containing protein
2012	 53.83	+1	2412040..2412405	-	121	119357869	-	Cpha266_2077	-	hypothetical protein
2013	 56.58	+1	2412468..2413676	+	402	119357870	xseA	Cpha266_2078	-	exodeoxyribonuclease VII large subunit
2014	 55.11	+1	2413654..2414397	-	247	119357871	-	Cpha266_2079	-	3-deoxy-manno-octulosonate cytidylyltransferase
2015	 54.97	+1	2414394..2414846	-	150	119357872	-	Cpha266_2080	-	D-tyrosyl-tRNA(Tyr) deacylase
2016	 51.96	0	2414868..2415173	-	101	119357873	-	Cpha266_2081	-	hypothetical protein
2017	 47.22	0	2415170..2415457	-	95	119357874	gatC	Cpha266_2082	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
2018	 49.40	0	2415525..2416868	-	447	119357875	-	Cpha266_2083	-	citrate synthase
2019	 52.27	0	2417553..2418566	-	337	119357876	-	Cpha266_2084	-	OmpA/MotB domain-containing protein
2020	 50.00	0	2418607..2419356	-	249	119357877	-	Cpha266_2085	-	hypothetical protein
2021	 49.76	0	2419373..2419579	-	68	119357878	-	Cpha266_2086	-	heavy metal transport/detoxification protein
2022	 47.69	0	2419777..2420382	+	201	119357879	-	Cpha266_2087	-	TPR repeat-containing protein
2023	 52.09	0	2420529..2421962	+	477	119357880	-	Cpha266_2088	-	isochorismate synthases
2024	 54.31	+1	2421959..2423722	+	587	119357881	-	Cpha266_2089	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
2025	 49.63	0	2423839..2424642	+	267	119357882	-	Cpha266_2090	-	alpha/beta hydrolase fold
2026	 54.50	+1	2424657..2425478	+	273	119357883	-	Cpha266_2091	-	naphthoate synthase
2027	 51.96	0	2425475..2426548	+	357	119357884	-	Cpha266_2092	-	O-succinylbenzoate-CoA synthase
2028	 53.84	+1	2426536..2427993	+	485	119357885	-	Cpha266_2093	-	O-succinylbenzoate-CoA ligase
2029	 51.42	0	2427965..2428528	-	187	119357886	-	Cpha266_2094	-	hypothetical protein
2030	 52.74	0	2428525..2429271	-	248	119357887	-	Cpha266_2095	-	dihydrodipicolinate reductase
2031	 49.72	0	2429408..2430298	-	296	119357888	-	Cpha266_2096	-	chromosome segregation DNA-binding protein
2032	 47.99	0	2430324..2431121	-	265	119357889	-	Cpha266_2097	-	chromosome segregation ATPase
2033	 50.08	0	2431217..2431807	+	196	119357890	-	Cpha266_2098	-	DNA-3-methyladenine glycosylase
2034	 51.41	0	2431886..2433268	+	460	119357891	-	Cpha266_2099	-	magnesium transporter
2035	 52.42	0	2433348..2434421	+	357	119357892	-	Cpha266_2100	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.