IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1874	 50.37	0	2242472..2243152	-	226	119357731	-	Cpha266_1935	-	exsB protein
1875	 49.88	0	2243329..2244972	-	547	119357732	groEL	Cpha266_1936	-	chaperonin GroEL
1876	 45.49	0	2245019..2245306	-	95	119357733	groES	Cpha266_1937	-	co-chaperonin GroES
1877	 49.46	0	2245494..2245772	+	92	119357734	-	Cpha266_1938	-	hypothetical protein
1878	 49.07	0	2245794..2248646	-	950	119357735	-	Cpha266_1939	-	excinuclease ABC subunit A
1879	 46.71	0	2248708..2249133	-	141	119357736	-	Cpha266_1940	-	BadM/Rrf2 family transcriptional regulator
1880	 48.86	0	2249262..2250137	+	291	119357737	-	Cpha266_1941	-	alpha/beta hydrolase fold
1881	 46.86	0	2250149..2252875	-	908	119357738	-	Cpha266_1942	-	hypothetical protein
1882	 52.67	0	2253049..2254248	+	399	119357739	-	Cpha266_1943	-	tryptophan synthase subunit beta
1883	 51.57	0	2255469..2255945	+	158	119357740	-	Cpha266_1944	-	hypothetical protein
1884	 50.61	0	2257466..2258038	-	190	119357741	-	Cpha266_1947	-	hypothetical protein
1885	 37.44	-2	2258652..2258846	-	64	119357742	-	Cpha266_1948	-	hypothetical protein
1886	 47.09	0	2259035..2260270	+	411	119357743	-	Cpha266_1949	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
1887	 49.30	0	2260265..2260477	-	70	119357744	-	Cpha266_1950	-	hypothetical protein
1888	 49.32	0	2260488..2261594	-	368	119357745	-	Cpha266_1951	-	XRE family plasmid maintenance system antidote protein
1889	 48.81	0	2261610..2261945	-	111	119357746	-	Cpha266_1952	-	killer suppression protein HigA, putative
1890	 51.65	0	2262004..2264907	-	967	119357747	-	Cpha266_1953	-	helicase domain-containing protein
1891	 53.46	+1	2266321..2267244	-	307	119357748	-	Cpha266_1954	-	integrase catalytic subunit
1892	 50.00	0	2267241..2267534	-	97	119357749	-	Cpha266_1955	-	transposase IS3/IS911 family protein
1893	 45.79	0	2268058..2269293	-	411	119357750	-	Cpha266_1956	-	hypothetical protein
1894	 42.57	-1	2269700..2272255	+	851	119357751	-	Cpha266_1957	-	multi-sensor hybrid histidine kinase
1895	 48.58	0	2272568..2273203	-	211	119357752	-	Cpha266_1959	-	NADPH-dependent FMN reductase
1896	 51.96	0	2273507..2274220	+	237	119357753	-	Cpha266_1960	-	glutamine amidotransferase class-I
1897	 53.23	+1	2274228..2275634	+	468	119357754	-	Cpha266_1961	-	deoxyribodipyrimidine photo-lyase type II
1898	 51.05	0	2275676..2278051	-	791	119357755	-	Cpha266_1962	-	ribonuclease R
1899	 48.10	0	2278387..2278860	-	157	119357756	-	Cpha266_1963	-	ferric uptake regulator family protein
1900	 44.63	0	2279068..2279430	+	120	119357757	-	Cpha266_1964	-	hypothetical protein
1901	 47.94	0	2279586..2280263	+	225	119357758	-	Cpha266_1965	-	peroxiredoxin
1902	 52.93	0	2281228..2282829	+	533	119357759	-	Cpha266_1966	-	indolepyruvate ferredoxin oxidoreductase
1903	 51.93	0	2282835..2283431	+	198	119357760	-	Cpha266_1967	-	indolepyruvate oxidoreductase subunit B
1904	 51.31	0	2283428..2284729	+	433	119357761	-	Cpha266_1968	-	phenylacetate-CoA ligase
1905	 44.63	0	2284796..2285344	+	182	119357762	-	Cpha266_1969	-	hypothetical protein
1906	 43.87	-1	2285341..2286033	+	230	119357763	-	Cpha266_1970	-	hypothetical protein
1907	 48.72	0	2286064..2286492	+	142	119357764	-	Cpha266_1971	-	amino acid-binding ACT domain-containing protein
1908	 52.18	0	2286508..2287701	+	397	119357765	-	Cpha266_1972	-	GntR family transcriptional regulator
1909	 50.71	0	2287866..2288636	-	256	119357766	-	Cpha266_1973	-	N-acetyltransferase
1910	 53.33	+1	2288813..2289172	-	119	119357767	-	Cpha266_1974	-	hypothetical protein
1911	 49.73	0	2289349..2289714	+	121	119357768	-	Cpha266_1975	-	hypothetical protein
1912	 44.92	0	2289736..2290089	+	117	119357769	-	Cpha266_1976	-	hypothetical protein
1913	 54.29	+1	2290110..2291345	-	411	119357770	-	Cpha266_1977	-	NADH:flavin oxidoreductase/NADH oxidase
1914	 49.42	0	2292608..2293210	+	200	119357771	-	Cpha266_1978	-	phosphoribosylglycinamide formyltransferase
1915	 49.26	0	2293207..2293878	+	223	119357772	-	Cpha266_1979	-	radical SAM domain-containing protein
1916	 46.50	0	2293887..2294858	-	323	119357773	-	Cpha266_1980	-	glycosyl transferase family protein
1917	 51.81	0	2295039..2295893	+	284	119357774	-	Cpha266_1981	-	endonuclease IV
1918	 48.19	0	2295917..2296798	-	293	119357775	-	Cpha266_1982	-	cell division protein FtsX
1919	 51.45	0	2297097..2297615	-	172	119357776	-	Cpha266_1983	-	hypothetical protein
1920	 45.88	0	2297909..2298490	-	193	119357777	-	Cpha266_1984	-	pentapeptide repeat-containing protein
1921	 47.84	0	2298616..2299077	+	153	119357778	-	Cpha266_1985	-	hypothetical protein
1922	 52.13	0	2299380..2300060	+	226	119357779	-	Cpha266_1986	-	hypothetical protein
1923	 52.28	0	2300227..2300970	-	247	119357780	-	Cpha266_1987	-	hypothetical protein
1924	 51.67	0	2301206..2301445	-	79	119357781	-	Cpha266_1988	-	transglycosylase-associated protein
1925	 47.86	0	2302346..2303839	+	497	119357782	-	Cpha266_1989	-	amidophosphoribosyltransferase
1926	 43.45	-1	2303912..2304346	-	144	119357783	-	Cpha266_1990	-	TraR/DksA family transcriptional regulator
1927	 48.45	0	2304395..2307655	-	1086	119357784	ileS	Cpha266_1991	-	isoleucyl-tRNA synthetase
1928	 46.48	0	2307832..2308044	-	70	119357785	-	Cpha266_1992	-	hypothetical protein
1929	 50.41	0	2308248..2309231	-	327	119357786	-	Cpha266_1993	-	UDP-galactose 4-epimerase
1930	 47.52	0	2309405..2309848	-	147	119357787	-	Cpha266_1994	-	hypothetical protein
1931	 48.42	0	2310007..2311080	-	357	119357788	-	Cpha266_1995	-	dTDP-glucose 4,6-dehydratase
1932	 48.34	0	2311121..2311993	-	290	119357789	-	Cpha266_1996	-	dTDP-4-dehydrorhamnose reductase
1933	 48.45	0	2312127..2312708	-	193	119357790	-	Cpha266_1997	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1934	 48.33	0	2312809..2313708	-	299	119357791	-	Cpha266_1998	-	glucose-1-phosphate thymidylyltransferase
1935	 48.24	0	2313882..2314391	-	169	119357792	-	Cpha266_1999	-	hypothetical protein
1936	 49.45	0	2314410..2315234	-	274	119357793	-	Cpha266_2000	-	short-chain dehydrogenase/reductase SDR
1937	 49.35	0	2315251..2316567	-	438	119357794	-	Cpha266_2001	-	ribulose 1,5-bisphosphate carboxylase large subunit
1938	 47.39	0	2316646..2317527	-	293	119357795	-	Cpha266_2002	-	aldolase
1939	 49.91	0	2317575..2319692	-	705	119357796	-	Cpha266_2003	-	short chain dehydrogenase
1940	 43.06	-1	2319779..2319994	-	71	119357797	-	Cpha266_2004	-	hypothetical protein
1941	 40.93	-1	2320028..2320501	-	157	119357798	-	Cpha266_2005	-	2-vinyl bacteriochlorophyllide hydratase
1942	 48.30	0	2321195..2321722	+	175	119357799	recX	Cpha266_2007	-	recombination regulator RecX
1943	 49.79	0	2321729..2322439	-	236	119357800	-	Cpha266_2008	-	uridylate kinase
1944	 48.44	0	2322531..2323397	-	288	119357801	tsf	Cpha266_2009	-	elongation factor Ts
1945	 49.41	0	2323430..2324188	-	252	119357802	rpsB	Cpha266_2010	-	30S ribosomal protein S2
1946	 51.79	0	2324369..2324758	-	129	119357803	rpsI	Cpha266_2011	-	30S ribosomal protein S9
1947	 46.22	0	2324776..2325225	-	149	119357804	rplM	Cpha266_2012	-	50S ribosomal protein L13
1948	 49.85	0	2325378..2326691	+	437	119357805	engA	Cpha266_2013	-	GTP-binding protein EngA
1949	 49.44	0	2326764..2327837	+	357	119357806	-	Cpha266_2014	-	hypothetical protein
1950	 53.26	+1	2327942..2328202	+	86	119357807	-	Cpha266_2015	-	NifU domain-containing protein
1951	 49.65	0	2328217..2330649	-	810	119357808	-	Cpha266_2016	-	cell divisionFtsK/SpoIIIE
1952	 49.54	0	2330690..2331787	-	365	119357809	-	Cpha266_2017	-	glycine cleavage system T protein
1953	 42.75	-1	2331797..2332051	-	84	119357810	-	Cpha266_2018	-	hypothetical protein
1954	 47.70	0	2332051..2332224	-	57	119357811	-	Cpha266_2019	-	hypothetical protein
1955	 49.92	0	2332221..2332871	-	216	119357812	-	Cpha266_2020	-	hypothetical protein
1956	 55.07	+1	2332903..2333592	-	229	119357813	-	Cpha266_2021	-	hypothetical protein
1957	 48.81	0	2333665..2334252	-	195	119357814	-	Cpha266_2022	-	LemA family protein
1958	 47.32	0	2334331..2336532	-	733	119357815	-	Cpha266_2023	-	metal dependent phosphohydrolase
1959	 51.26	0	2336639..2338696	-	685	119357816	-	Cpha266_2024	-	excinuclease ABC subunit B
1960	 47.69	0	2339043..2341988	+	981	119357817	-	Cpha266_2025	-	peptidase M16 domain-containing protein
1961	 49.40	0	2342046..2343122	+	358	119357818	-	Cpha266_2026	-	permease YjgP/YjgQ family protein
1962	 51.72	0	2343122..2343964	+	280	119357819	-	Cpha266_2027	-	hypothetical protein
1963	 49.44	0	2343961..2344860	-	299	119357820	-	Cpha266_2028	-	RNA polymerase, sigma 32 subunit, RpoH
1964	 52.30	0	2345021..2347735	-	904	119357821	valS	Cpha266_2029	-	valyl-tRNA synthetase
1965	 50.29	0	2347987..2348670	-	227	119357822	-	Cpha266_2030	-	ATP-dependent Clp protease proteolytic subunit ClpP
1966	 48.96	0	2348987..2349562	+	191	119357823	thyX	Cpha266_2031	-	FAD-dependent thymidylate synthase
1967	 49.88	0	2349559..2350398	-	279	119357824	-	Cpha266_2032	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
1968	 49.60	0	2350519..2353290	+	923	119357825	-	Cpha266_2033	-	patatin
1969	 49.68	0	2353360..2354136	+	258	119357826	-	Cpha266_2034	-	exopolyphosphatase / 5'-nucleotidase / 3'-nucleotidase
1970	 48.11	0	2354141..2355832	+	563	119357827	-	Cpha266_2035	-	hypothetical protein
1971	 49.39	0	2355867..2356196	-	109	119357828	-	Cpha266_2036	-	Fis family transcriptional regulator
1972	 48.94	0	2356749..2357312	-	187	119357829	-	Cpha266_2037	-	anthranilate synthase component II
1973	 48.93	0	2357333..2358589	-	418	119357830	-	Cpha266_2038	-	hypothetical protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.