IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1807	 52.32	0	2164520..2165641	-	373	119357664	-	Cpha266_1868	-	DegT/DnrJ/EryC1/StrS aminotransferase
1808	 50.25	0	2165936..2167360	+	474	119357665	-	Cpha266_1869	-	UDP-N-acetylmuramate--L-alanine ligase
1809	 49.45	0	2167478..2168482	+	334	119357666	-	Cpha266_1870	-	glyceraldehyde-3-phosphate dehydrogenase
1810	 47.00	0	2168704..2169354	+	216	119357667	-	Cpha266_1871	-	proto-chlorophyllide reductase 57 kD subunit
1811	 52.02	0	2169433..2170620	-	395	119357668	-	Cpha266_1872	-	chaperone protein DnaJ
1812	 46.47	0	2170705..2171328	-	207	119357669	-	Cpha266_1873	-	GrpE protein
1813	 48.14	0	2171348..2172421	-	357	119357670	-	Cpha266_1874	-	heat-inducible transcription repressor HrcA
1814	 51.55	0	2172627..2173532	-	301	119357671	-	Cpha266_1875	-	HemK family modification methylase
1815	 46.75	0	2173689..2174426	+	245	119357672	-	Cpha266_1876	-	hypothetical protein
1816	 52.21	0	2174480..2175925	+	481	119357673	-	Cpha266_1877	-	prolyl-tRNA synthetase
1817	 48.56	0	2176001..2176591	-	196	119357674	-	Cpha266_1878	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1818	 43.00	-1	2176607..2176906	+	99	119357675	-	Cpha266_1879	-	hypothetical protein
1819	 46.96	0	2177013..2177357	-	114	119357676	-	Cpha266_1880	-	hypothetical protein
1820	 49.46	0	2177522..2177893	-	123	119357677	-	Cpha266_1881	-	hypothetical protein
1821	 51.54	0	2178110..2179411	+	433	119357678	-	Cpha266_1882	-	xanthine/uracil/vitamin C permease
1822	 51.70	0	2179425..2180279	+	284	119357679	-	Cpha266_1883	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1823	 50.73	0	2180274..2181158	-	294	119357680	-	Cpha266_1884	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
1824	 51.96	0	2181267..2182646	+	459	119357681	-	Cpha266_1885	-	sporulation domain-containing protein
1825	 47.89	0	2182683..2183822	+	379	119357682	-	Cpha266_1886	-	sigma-54 dependent trancsriptional regulator
1826	 47.18	0	2184898..2186580	-	560	119357683	-	Cpha266_1887	-	apolipoprotein N-acyltransferase
1827	 49.68	0	2186731..2187831	+	366	119357684	-	Cpha266_1888	-	bacteriochlorophyll A protein
1828	 48.40	0	2189755..2190159	-	134	119357685	-	Cpha266_1889	-	MerR family transcriptional regulator
1829	 50.48	0	2190240..2192000	+	586	119357686	-	Cpha266_1890	-	ABC transporter related
1830	 56.67	+1	2192007..2193176	-	389	119357687	purT	Cpha266_1891	-	phosphoribosylglycinamide formyltransferase 2
1831	 52.45	0	2193645..2194277	-	210	119357688	-	Cpha266_1892	-	HAD family hydrolase
1832	 54.38	+1	2194980..2199725	-	1581	119357689	-	Cpha266_1893	-	hypothetical protein
1833	 47.54	0	2199722..2201044	-	440	119357690	-	Cpha266_1894	-	hypothetical protein
1834	 59.12	+2	2201174..2202604	-	476	119357691	-	Cpha266_1895	-	radical SAM domain-containing protein
1835	 53.65	+1	2202604..2205222	-	872	119357692	-	Cpha266_1896	-	DNA mismatch repair protein
1836	 53.42	+1	2205477..2205914	+	145	119357693	-	Cpha266_1897	-	hypothetical protein
1837	 49.00	0	2206028..2206327	+	99	119357694	rplU	Cpha266_1898	-	50S ribosomal protein L21
1838	 50.59	0	2206365..2206619	+	84	119357695	rpmA	Cpha266_1899	-	50S ribosomal protein L27
1839	 49.84	0	2206741..2207673	+	310	119357696	-	Cpha266_1900	-	malate dehydrogenase
1840	 52.50	0	2207738..2208796	-	352	119357697	-	Cpha266_1901	-	peptidyl-arginine deiminase
1841	 49.05	0	2208815..2210074	-	419	119357698	-	Cpha266_1902	-	Ste24 endopeptidase
1842	 53.87	+1	2211310..2212200	-	296	119357699	-	Cpha266_1903	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1843	 52.28	0	2212215..2213069	-	284	119357700	-	Cpha266_1904	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1844	 50.43	0	2213116..2214168	-	350	119357701	-	Cpha266_1905	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1845	 45.98	0	2214195..2214542	-	115	119357702	-	Cpha266_1906	-	hypothetical protein
1846	 51.85	0	2214683..2215438	+	251	119357703	-	Cpha266_1907	-	imidazole glycerol phosphate synthase subunit hisF
1847	 48.64	0	2215585..2216322	-	245	119357704	-	Cpha266_1908	-	Type II site-specific deoxyribonuclease
1848	 50.06	0	2216323..2217996	-	557	119357705	-	Cpha266_1909	-	hypothetical protein
1849	 47.27	0	2218374..2218904	-	176	119357706	-	Cpha266_1910	-	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30
1850	 45.03	0	2218954..2219526	+	190	119357707	-	Cpha266_1911	-	hypothetical protein
1851	 44.71	0	2219546..2220670	-	374	119357708	-	Cpha266_1912	-	magnesium and cobalt transport protein CorA
1852	 51.74	0	2220686..2221690	-	334	119357709	-	Cpha266_1913	-	hypothetical protein
1853	 45.10	0	2222144..2222347	+	67	119357710	-	Cpha266_1914	-	hypothetical protein
1854	 41.18	-1	2222363..2223139	+	258	119357711	-	Cpha266_1915	-	hypothetical protein
1855	 51.10	0	2223447..2224532	+	361	119357712	-	Cpha266_1916	-	adenosine deaminase
1856	 49.81	0	2224547..2225080	+	177	119357713	-	Cpha266_1917	-	hypoxanthine phosphoribosyltransferase
1857	 51.73	0	2225309..2226466	+	385	119357714	-	Cpha266_1918	-	homocitrate synthase
1858	 48.60	0	2226483..2228120	+	545	119357715	-	Cpha266_1919	-	Fis family transcriptional regulator
1859	 53.65	+1	2228136..2229095	-	319	119357716	-	Cpha266_1920	-	aldo/keto reductase
1860	 48.46	0	2229095..2229451	-	118	119357717	-	Cpha266_1921	-	hypothetical protein
1861	 52.61	0	2229660..2230349	-	229	119357718	-	Cpha266_1922	-	MIP family channel protein
1862	 49.10	0	2230679..2230900	-	73	119357719	-	Cpha266_1923	-	hypothetical protein
1863	 46.94	0	2231040..2231186	-	48	119357720	-	Cpha266_1924	-	hypothetical protein
1864	 50.16	0	2231511..2233085	+	524	119357721	-	Cpha266_1925	-	integrase catalytic subunit
1865	 50.07	0	2233100..2233846	+	248	119357722	-	Cpha266_1926	-	IstB ATP binding domain-containing protein
1866	 49.89	0	2235794..2236252	-	152	119357723	-	Cpha266_1927	-	hypothetical protein
1867	 49.10	0	2236265..2237101	-	278	119357724	-	Cpha266_1928	-	protein of unknown function DUF306, Meta and HslJ
1868	 51.09	0	2237623..2238033	+	136	119357725	-	Cpha266_1929	-	thioesterase superfamily protein
1869	 47.44	0	2238157..2238723	+	188	119357726	-	Cpha266_1930	-	cyclase/dehydrase
1870	 51.90	0	2238781..2239830	+	349	119357727	-	Cpha266_1931	-	NAD-dependent epimerase/dehydratase
1871	 49.63	0	2239784..2240863	-	359	119357728	-	Cpha266_1932	-	glycosyl transferase family protein
1872	 51.74	0	2240876..2241679	-	267	119357729	trpA	Cpha266_1933	-	tryptophan synthase subunit alpha
1873	 48.47	0	2241697..2242383	-	228	119357730	-	Cpha266_1934	-	abortive infection protein
1874	 50.37	0	2242472..2243152	-	226	119357731	-	Cpha266_1935	-	exsB protein
1875	 49.88	0	2243329..2244972	-	547	119357732	groEL	Cpha266_1936	-	chaperonin GroEL
1876	 45.49	0	2245019..2245306	-	95	119357733	groES	Cpha266_1937	-	co-chaperonin GroES
1877	 49.46	0	2245494..2245772	+	92	119357734	-	Cpha266_1938	-	hypothetical protein
1878	 49.07	0	2245794..2248646	-	950	119357735	-	Cpha266_1939	-	excinuclease ABC subunit A
1879	 46.71	0	2248708..2249133	-	141	119357736	-	Cpha266_1940	-	BadM/Rrf2 family transcriptional regulator
1880	 48.86	0	2249262..2250137	+	291	119357737	-	Cpha266_1941	-	alpha/beta hydrolase fold
1881	 46.86	0	2250149..2252875	-	908	119357738	-	Cpha266_1942	-	hypothetical protein
1882	 52.67	0	2253049..2254248	+	399	119357739	-	Cpha266_1943	-	tryptophan synthase subunit beta
1883	 51.57	0	2255469..2255945	+	158	119357740	-	Cpha266_1944	-	hypothetical protein
1884	 50.61	0	2257466..2258038	-	190	119357741	-	Cpha266_1947	-	hypothetical protein
1885	 37.44	-2	2258652..2258846	-	64	119357742	-	Cpha266_1948	-	hypothetical protein
1886	 47.09	0	2259035..2260270	+	411	119357743	-	Cpha266_1949	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
1887	 49.30	0	2260265..2260477	-	70	119357744	-	Cpha266_1950	-	hypothetical protein
1888	 49.32	0	2260488..2261594	-	368	119357745	-	Cpha266_1951	-	XRE family plasmid maintenance system antidote protein
1889	 48.81	0	2261610..2261945	-	111	119357746	-	Cpha266_1952	-	killer suppression protein HigA, putative
1890	 51.65	0	2262004..2264907	-	967	119357747	-	Cpha266_1953	-	helicase domain-containing protein
1891	 53.46	+1	2266321..2267244	-	307	119357748	-	Cpha266_1954	-	integrase catalytic subunit
1892	 50.00	0	2267241..2267534	-	97	119357749	-	Cpha266_1955	-	transposase IS3/IS911 family protein
1893	 45.79	0	2268058..2269293	-	411	119357750	-	Cpha266_1956	-	hypothetical protein
1894	 42.57	-1	2269700..2272255	+	851	119357751	-	Cpha266_1957	-	multi-sensor hybrid histidine kinase
1895	 48.58	0	2272568..2273203	-	211	119357752	-	Cpha266_1959	-	NADPH-dependent FMN reductase
1896	 51.96	0	2273507..2274220	+	237	119357753	-	Cpha266_1960	-	glutamine amidotransferase class-I
1897	 53.23	+1	2274228..2275634	+	468	119357754	-	Cpha266_1961	-	deoxyribodipyrimidine photo-lyase type II
1898	 51.05	0	2275676..2278051	-	791	119357755	-	Cpha266_1962	-	ribonuclease R
1899	 48.10	0	2278387..2278860	-	157	119357756	-	Cpha266_1963	-	ferric uptake regulator family protein
1900	 44.63	0	2279068..2279430	+	120	119357757	-	Cpha266_1964	-	hypothetical protein
1901	 47.94	0	2279586..2280263	+	225	119357758	-	Cpha266_1965	-	peroxiredoxin
1902	 52.93	0	2281228..2282829	+	533	119357759	-	Cpha266_1966	-	indolepyruvate ferredoxin oxidoreductase
1903	 51.93	0	2282835..2283431	+	198	119357760	-	Cpha266_1967	-	indolepyruvate oxidoreductase subunit B
1904	 51.31	0	2283428..2284729	+	433	119357761	-	Cpha266_1968	-	phenylacetate-CoA ligase
1905	 44.63	0	2284796..2285344	+	182	119357762	-	Cpha266_1969	-	hypothetical protein
1906	 43.87	-1	2285341..2286033	+	230	119357763	-	Cpha266_1970	-	hypothetical protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.