IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1683	 47.62	0	1969672..1970742	+	356	119357540	-	Cpha266_1743	-	hypothetical protein
1684	 47.50	0	1970807..1971625	+	272	119357541	-	Cpha266_1744	-	transglutaminase domain-containing protein
1685	 42.61	-1	1971731..1972258	-	175	119357542	-	Cpha266_1745	-	hypothetical protein
1686	 49.52	0	1972472..1973812	-	446	119357543	-	Cpha266_1746	-	TolC family type I secretion outer membrane protein
1687	 53.47	+1	1973891..1975072	-	393	119357544	-	Cpha266_1747	-	secretion protein HlyD family protein
1688	 52.04	0	1975105..1976820	-	571	119357545	-	Cpha266_1748	-	type I secretion system ATPase
1689	 53.32	+1	1976830..1978515	-	561	119357546	-	Cpha266_1749	-	type I secretion system ATPase
1690	 51.78	0	1978730..1990663	-	3977	119357547	-	Cpha266_1750	-	5'-nucleotidase domain-containing protein
1691	 50.89	0	1991873..1993444	+	523	119357548	-	Cpha266_1751	-	integrase catalytic subunit
1692	 51.25	0	1993450..1994286	+	278	119357549	-	Cpha266_1752	-	IstB ATP binding domain-containing protein
1693	 49.07	0	1994305..1994844	+	179	119357550	-	Cpha266_1753	-	YapH protein
1694	 43.87	-1	1994857..1995549	-	230	119357551	-	Cpha266_1754	-	hypothetical protein
1695	 44.63	0	1995546..1996094	-	182	119357552	-	Cpha266_1755	-	hypothetical protein
1696	 54.00	+1	1996316..1997191	+	291	119357553	-	Cpha266_1756	-	hypothetical protein
1697	 52.13	0	1997178..1999970	+	930	119357554	-	Cpha266_1757	-	hypothetical protein
1698	 49.91	0	2000198..2000740	+	180	119357555	-	Cpha266_1758	-	hypothetical protein
1699	 52.12	0	2000936..2002069	+	377	119357556	-	Cpha266_1759	-	queuine tRNA-ribosyltransferase
1700	 51.19	0	2002056..2003354	+	432	119357557	-	Cpha266_1760	-	MiaB-like tRNA modifying enzyme YliG
1701	 50.30	0	2003552..2004223	+	223	119357558	radC	Cpha266_1761	-	DNA repair protein RadC
1702	 48.06	0	2004365..2004622	-	85	119357559	-	Cpha266_1762	-	cold-shock DNA-binding protein family protein
1703	 47.68	0	2004827..2005558	+	243	119357560	-	Cpha266_1763	-	short-chain dehydrogenase/reductase SDR
1704	 48.80	0	2005650..2006108	+	152	119357561	-	Cpha266_1764	-	GatB/Yqey domain-containing protein
1705	 49.00	0	2006131..2007426	+	431	119357562	-	Cpha266_1765	-	seryl-tRNA synthetase
1706	 48.70	0	2007411..2008490	-	359	119357563	-	Cpha266_1766	-	homoserine O-acetyltransferase
1707	 49.81	0	2008496..2009788	-	430	119357564	-	Cpha266_1767	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
1708	 49.36	0	2010117..2011451	+	444	119357565	-	Cpha266_1768	-	sun protein
1709	 48.52	0	2011454..2012368	+	304	119357566	-	Cpha266_1769	-	tyrosine recombinase XerD
1710	 46.74	0	2012373..2012894	-	173	119357567	-	Cpha266_1770	-	TPR repeat-containing protein
1711	 40.32	-1	2012921..2013421	-	166	119357568	-	Cpha266_1771	-	hypothetical protein
1712	 50.29	0	2013619..2015016	-	465	119357569	-	Cpha266_1772	-	beta-lactamase domain-containing protein
1713	 48.86	0	2015091..2016494	-	467	119357570	-	Cpha266_1773	-	hypothetical protein
1714	 49.38	0	2016841..2018610	-	589	119357571	-	Cpha266_1774	-	DEAD/DEAH box helicase domain-containing protein
1715	 49.12	0	2018912..2019367	-	151	119357572	-	Cpha266_1775	-	hypothetical protein
1716	 44.23	0	2019426..2020205	-	259	119357573	-	Cpha266_1776	-	integral membrane protein TerC
1717	 48.12	0	2020222..2022135	-	637	119357574	-	Cpha266_1777	-	K+ potassium transporter
1718	 48.40	0	2022533..2023813	+	426	119357575	-	Cpha266_1778	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
1719	 45.86	0	2023843..2024361	+	172	119357576	-	Cpha266_1779	-	hypothetical protein
1720	 49.06	0	2024364..2025374	+	336	119357577	-	Cpha266_1780	-	4-hydroxythreonine-4-phosphate dehydrogenase
1721	 46.44	0	2025371..2026072	+	233	119357578	-	Cpha266_1781	-	cell division ATP-binding protein FtsE
1722	 50.39	0	2026178..2029624	-	1148	119357579	-	Cpha266_1782	-	ribonucleotide-diphosphate reductase subunit alpha
1723	 50.85	0	2030199..2031203	-	334	119357580	-	Cpha266_1783	-	NAD-dependent epimerase/dehydratase
1724	 46.55	0	2031259..2031591	+	110	119357581	-	Cpha266_1784	-	hypothetical protein
1725	 42.44	-1	2032526..2033173	+	215	119357582	-	Cpha266_1785	-	putative PAS/PAC sensor protein
1726	 41.32	-1	2033353..2033715	-	120	119357583	-	Cpha266_1786	-	response regulator receiver protein
1727	 44.56	0	2033726..2036521	-	931	119357584	-	Cpha266_1787	-	PAS/PAC sensor hybrid histidine kinase
1728	 48.55	0	2037132..2040128	+	998	119357585	-	Cpha266_1788	-	putative PAS/PAC sensor protein
1729	 48.34	0	2040468..2042186	+	572	119357586	-	Cpha266_1789	-	extracellular solute-binding protein
1730	 46.06	0	2042302..2042796	+	164	119357587	-	Cpha266_1790	-	2-vinyl bacteriochlorophyllide hydratase
1731	 49.25	0	2042800..2043804	+	334	119357588	-	Cpha266_1791	-	chlorophyll synthesis pathway, BchC
1732	 47.52	0	2043817..2044923	+	368	119357589	-	Cpha266_1792	-	chlorophyllide reductase iron protein subunit X
1733	 47.67	0	2044920..2046746	-	608	119357590	-	Cpha266_1793	-	GTP-binding protein TypA
1734	 47.15	0	2046988..2047776	+	262	119357591	-	Cpha266_1794	-	cytochrome c assembly protein
1735	 45.54	0	2047899..2049176	+	425	119357592	hemA	Cpha266_1795	-	glutamyl-tRNA reductase
1736	 48.94	0	2049195..2050136	+	313	119357593	-	Cpha266_1796	-	porphobilinogen deaminase
1737	 47.62	0	2050136..2050891	+	251	119357594	-	Cpha266_1797	-	uroporphyrinogen-III synthase
1738	 49.90	0	2050917..2051405	-	162	119357595	-	Cpha266_1798	-	hypothetical protein
1739	 48.52	0	2051405..2052181	-	258	119357596	-	Cpha266_1799	-	histidinol-phosphate phosphatase
1740	 48.35	0	2052458..2053216	-	252	119357597	-	Cpha266_1800	-	hypothetical protein
1741	 45.38	0	2053271..2055370	-	699	119357598	-	Cpha266_1801	-	integral membrane sensor hybrid histidine kinase
1742	 47.73	0	2055373..2056692	-	439	119357599	-	Cpha266_1802	-	amine oxidase
1743	 44.58	0	2056689..2057684	-	331	119357600	-	Cpha266_1803	-	hypothetical protein
1744	 51.27	0	2058016..2059002	+	328	119357601	-	Cpha266_1804	-	delta-aminolevulinic acid dehydratase
1745	 53.56	+1	2059023..2060273	+	416	119357602	-	Cpha266_1805	-	chorismate synthase
1746	 50.86	0	2060280..2061089	-	269	119357603	-	Cpha266_1806	-	serine O-acetyltransferase
1747	 49.84	0	2061665..2062900	+	411	119357604	-	Cpha266_1807	-	hypothetical protein
1748	 48.12	0	2062900..2063697	+	265	119357605	-	Cpha266_1808	-	cytochrome c assembly protein
1749	 45.63	0	2063842..2064459	+	205	119357606	-	Cpha266_1809	-	metal dependent phosphohydrolase
1750	 51.91	0	2065613..2066818	-	401	119357607	-	Cpha266_1811	-	glycosyl transferase family protein
1751	 51.35	0	2066815..2068035	-	406	119357608	-	Cpha266_1812	-	glycosyl transferase, group 1
1752	 47.75	0	2068032..2069120	-	362	119357609	-	Cpha266_1813	-	glycosyl transferase family protein
1753	 46.04	0	2069117..2070226	-	369	119357610	-	Cpha266_1814	-	radical SAM domain-containing protein
1754	 42.96	-1	2070485..2070889	-	134	119357611	-	Cpha266_1815	-	hypothetical protein
1755	 49.04	0	2070908..2072314	-	468	119357612	-	Cpha266_1816	-	hypothetical protein
1756	 51.22	0	2072416..2072946	-	176	119357613	-	Cpha266_1817	-	serine O-acetyltransferase
1757	 50.30	0	2072943..2074091	-	382	119357614	-	Cpha266_1818	-	glycosyl transferase, group 1
1758	 45.40	0	2074106..2076400	-	764	119357615	-	Cpha266_1819	-	uncharacterized protein involved in exopolysaccharide biosynthesis-like
1759	 46.05	0	2076394..2078154	-	586	119357616	-	Cpha266_1820	-	polysaccharide biosynthesis protein
1760	 37.77	-2	2078348..2079271	-	307	119357617	-	Cpha266_1821	-	glycosyl transferase family protein
1761	 45.64	0	2079402..2080571	-	389	119357618	-	Cpha266_1822	-	glycosyl transferase, group 1
1762	 47.16	0	2080779..2081942	-	387	119357619	-	Cpha266_1823	-	polysaccharide export protein
1763	 46.24	0	2082246..2082764	-	172	119357620	-	Cpha266_1824	-	serine O-acetyltransferase
1764	 48.00	0	2082771..2083745	-	324	119357621	-	Cpha266_1825	-	glycosyl transferase family protein
1765	 46.40	0	2083765..2084208	-	147	119357622	-	Cpha266_1826	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
1766	 41.95	-1	2084205..2084552	-	115	119357623	-	Cpha266_1827	-	anti-sigma-factor antagonist
1767	 46.13	0	2084561..2085943	-	460	119357624	-	Cpha266_1828	-	nucleoside-diphosphate-sugar pyrophosphorylase
1768	 47.18	0	2085956..2086309	-	117	119357625	-	Cpha266_1829	-	anti-sigma-factor antagonist
1769	 47.22	0	2086321..2087040	-	239	119357626	-	Cpha266_1830	-	undecaprenyl-phosphate galactose phosphotransferase
1770	 45.80	0	2087046..2088818	-	590	119357627	-	Cpha266_1831	-	N-acetylmannosaminyltransferase
1771	 47.64	0	2089097..2090452	-	451	119357628	-	Cpha266_1832	-	sigma-54 dependent trancsriptional regulator
1772	 47.65	0	2090479..2092161	-	560	119357629	-	Cpha266_1833	-	putative PAS/PAC sensor protein
1773	 46.24	0	2092158..2094203	-	681	119357630	-	Cpha266_1834	-	multi-sensor signal transduction histidine kinase
1774	 48.42	0	2094984..2095679	-	231	119357631	-	Cpha266_1835	-	methyltransferase type 12
1775	 43.50	-1	2096066..2097235	-	389	119357632	-	Cpha266_1836	-	transposase, IS4 family protein
1776	 43.55	-1	2097372..2097890	+	172	119357633	-	Cpha266_1837	-	TPR domain-containing protein
1777	 46.15	0	2097918..2098346	-	142	119357634	-	Cpha266_1838	-	hypothetical protein
1778	 45.33	0	2098514..2099455	-	313	119357635	-	Cpha266_1839	-	hypothetical protein
1779	 50.00	0	2099397..2110079	-	3560	119357636	-	Cpha266_1840	-	TPR repeat-containing protein
1780	 49.69	0	2110080..2119187	-	3035	119357637	-	Cpha266_1841	-	TPR repeat-containing protein
1781	 48.94	0	2119392..2120384	-	330	119357638	-	Cpha266_1842	-	secretion protein HlyD family protein
1782	 49.23	0	2120381..2123419	-	1012	119357639	-	Cpha266_1843	-	cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.