IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1648	 42.81	-1	1932519..1933415	-	298	119357505	-	Cpha266_1707	-	hypothetical protein
1649	 43.56	-1	1933405..1936650	-	1081	119357506	-	Cpha266_1708	-	hypothetical protein
1650	 45.39	0	1936647..1937699	-	350	119357507	-	Cpha266_1709	-	zinc finger, CHC2-family protein
1651	 49.00	0	1937703..1938947	-	414	119357508	-	Cpha266_1710	-	restriction modification system DNA specificity subunit
1652	 51.11	0	1938953..1939807	-	284	119357509	dinD	Cpha266_1711	-	DNA-damage-inducible protein D
1653	 58.57	+2	1940022..1942010	-	662	119357510	-	Cpha266_1712	-	N-6 DNA methylase
1654	 47.96	0	1942300..1943085	-	261	119357511	-	Cpha266_1713	-	hypothetical protein
1655	 46.18	0	1943085..1943582	-	165	119357512	-	Cpha266_1714	-	hypothetical protein
1656	 49.33	0	1943652..1944845	+	397	119357513	-	Cpha266_1715	-	appr-1-p processing domain-containing protein
1657	 49.31	0	1945048..1945335	+	95	119357514	-	Cpha266_1716	-	hypothetical protein
1658	 47.86	0	1945513..1946235	-	240	119357515	-	Cpha266_1717	-	curli production assembly/transport component CsgG
1659	 49.19	0	1946605..1947342	+	245	119357516	-	Cpha266_1718	-	hypothetical protein
1660	 53.40	+1	1947571..1947879	-	102	119357517	-	Cpha266_1719	-	thioredoxin
1661	 51.32	0	1947901..1948356	-	151	119357518	-	Cpha266_1720	-	OsmC family protein
1662	 52.27	0	1948838..1951039	-	733	119357519	-	Cpha266_1722	-	ComEC/Rec2-related protein
1663	 50.00	0	1951151..1952020	+	289	119357520	-	Cpha266_1723	-	5,10-methylenetetrahydrofolate reductase
1664	 50.00	0	1952042..1953349	-	435	119357521	-	Cpha266_1724	-	diaminopimelate decarboxylase
1665	 40.98	-1	1953438..1953620	+	60	119357522	rpmG	Cpha266_1725	-	50S ribosomal protein L33
1666	 44.69	0	1953925..1954725	+	266	119357523	-	Cpha266_1726	-	hypothetical protein
1667	 48.44	0	1955288..1955479	-	63	119357524	-	Cpha266_1727	-	hypothetical protein
1668	 47.88	0	1955526..1956350	-	274	119357525	-	Cpha266_1728	-	hypothetical protein
1669	 52.94	0	1956380..1957537	-	385	119357526	-	Cpha266_1729	-	aminotransferase
1670	 47.64	0	1957617..1958189	-	190	119357527	-	Cpha266_1730	-	hypothetical protein
1671	 44.57	0	1958239..1958496	-	85	119357528	-	Cpha266_1731	-	hypothetical protein
1672	 52.67	0	1958523..1959008	-	161	119357529	-	Cpha266_1732	-	hypothetical protein
1673	 51.87	0	1959010..1960077	-	355	119357530	-	Cpha266_1733	-	ferredoxin
1674	 45.38	0	1960217..1961038	-	273	119357531	-	Cpha266_1734	-	hypothetical protein
1675	 50.09	0	1961102..1961674	-	190	119357532	-	Cpha266_1735	-	hypothetical protein
1676	 45.45	0	1961687..1962115	-	142	119357533	-	Cpha266_1736	-	hypothetical protein
1677	 48.12	0	1962090..1963394	-	434	119357534	-	Cpha266_1737	-	GTP-binding protein, HSR1-related
1678	 44.69	0	1963607..1964539	+	310	119357535	-	Cpha266_1738	-	squalene/phytoene synthase
1679	 48.10	0	1964587..1966116	+	509	119357536	lysS	Cpha266_1739	-	lysyl-tRNA synthetase
1680	 45.60	0	1966158..1966850	+	230	119357537	-	Cpha266_1740	-	putative transcriptional regulator
1681	 48.88	0	1966817..1967845	-	342	119357538	-	Cpha266_1741	-	NAD-dependent epimerase/dehydratase
1682	 50.10	0	1968204..1969652	+	482	119357539	-	Cpha266_1742	-	hypothetical protein
1683	 47.62	0	1969672..1970742	+	356	119357540	-	Cpha266_1743	-	hypothetical protein
1684	 47.50	0	1970807..1971625	+	272	119357541	-	Cpha266_1744	-	transglutaminase domain-containing protein
1685	 42.61	-1	1971731..1972258	-	175	119357542	-	Cpha266_1745	-	hypothetical protein
1686	 49.52	0	1972472..1973812	-	446	119357543	-	Cpha266_1746	-	TolC family type I secretion outer membrane protein
1687	 53.47	+1	1973891..1975072	-	393	119357544	-	Cpha266_1747	-	secretion protein HlyD family protein
1688	 52.04	0	1975105..1976820	-	571	119357545	-	Cpha266_1748	-	type I secretion system ATPase
1689	 53.32	+1	1976830..1978515	-	561	119357546	-	Cpha266_1749	-	type I secretion system ATPase
1690	 51.78	0	1978730..1990663	-	3977	119357547	-	Cpha266_1750	-	5'-nucleotidase domain-containing protein
1691	 50.89	0	1991873..1993444	+	523	119357548	-	Cpha266_1751	-	integrase catalytic subunit
1692	 51.25	0	1993450..1994286	+	278	119357549	-	Cpha266_1752	-	IstB ATP binding domain-containing protein
1693	 49.07	0	1994305..1994844	+	179	119357550	-	Cpha266_1753	-	YapH protein
1694	 43.87	-1	1994857..1995549	-	230	119357551	-	Cpha266_1754	-	hypothetical protein
1695	 44.63	0	1995546..1996094	-	182	119357552	-	Cpha266_1755	-	hypothetical protein
1696	 54.00	+1	1996316..1997191	+	291	119357553	-	Cpha266_1756	-	hypothetical protein
1697	 52.13	0	1997178..1999970	+	930	119357554	-	Cpha266_1757	-	hypothetical protein
1698	 49.91	0	2000198..2000740	+	180	119357555	-	Cpha266_1758	-	hypothetical protein
1699	 52.12	0	2000936..2002069	+	377	119357556	-	Cpha266_1759	-	queuine tRNA-ribosyltransferase
1700	 51.19	0	2002056..2003354	+	432	119357557	-	Cpha266_1760	-	MiaB-like tRNA modifying enzyme YliG
1701	 50.30	0	2003552..2004223	+	223	119357558	radC	Cpha266_1761	-	DNA repair protein RadC
1702	 48.06	0	2004365..2004622	-	85	119357559	-	Cpha266_1762	-	cold-shock DNA-binding protein family protein
1703	 47.68	0	2004827..2005558	+	243	119357560	-	Cpha266_1763	-	short-chain dehydrogenase/reductase SDR
1704	 48.80	0	2005650..2006108	+	152	119357561	-	Cpha266_1764	-	GatB/Yqey domain-containing protein
1705	 49.00	0	2006131..2007426	+	431	119357562	-	Cpha266_1765	-	seryl-tRNA synthetase
1706	 48.70	0	2007411..2008490	-	359	119357563	-	Cpha266_1766	-	homoserine O-acetyltransferase
1707	 49.81	0	2008496..2009788	-	430	119357564	-	Cpha266_1767	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
1708	 49.36	0	2010117..2011451	+	444	119357565	-	Cpha266_1768	-	sun protein
1709	 48.52	0	2011454..2012368	+	304	119357566	-	Cpha266_1769	-	tyrosine recombinase XerD
1710	 46.74	0	2012373..2012894	-	173	119357567	-	Cpha266_1770	-	TPR repeat-containing protein
1711	 40.32	-1	2012921..2013421	-	166	119357568	-	Cpha266_1771	-	hypothetical protein
1712	 50.29	0	2013619..2015016	-	465	119357569	-	Cpha266_1772	-	beta-lactamase domain-containing protein
1713	 48.86	0	2015091..2016494	-	467	119357570	-	Cpha266_1773	-	hypothetical protein
1714	 49.38	0	2016841..2018610	-	589	119357571	-	Cpha266_1774	-	DEAD/DEAH box helicase domain-containing protein
1715	 49.12	0	2018912..2019367	-	151	119357572	-	Cpha266_1775	-	hypothetical protein
1716	 44.23	0	2019426..2020205	-	259	119357573	-	Cpha266_1776	-	integral membrane protein TerC
1717	 48.12	0	2020222..2022135	-	637	119357574	-	Cpha266_1777	-	K+ potassium transporter
1718	 48.40	0	2022533..2023813	+	426	119357575	-	Cpha266_1778	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
1719	 45.86	0	2023843..2024361	+	172	119357576	-	Cpha266_1779	-	hypothetical protein
1720	 49.06	0	2024364..2025374	+	336	119357577	-	Cpha266_1780	-	4-hydroxythreonine-4-phosphate dehydrogenase
1721	 46.44	0	2025371..2026072	+	233	119357578	-	Cpha266_1781	-	cell division ATP-binding protein FtsE
1722	 50.39	0	2026178..2029624	-	1148	119357579	-	Cpha266_1782	-	ribonucleotide-diphosphate reductase subunit alpha
1723	 50.85	0	2030199..2031203	-	334	119357580	-	Cpha266_1783	-	NAD-dependent epimerase/dehydratase
1724	 46.55	0	2031259..2031591	+	110	119357581	-	Cpha266_1784	-	hypothetical protein
1725	 42.44	-1	2032526..2033173	+	215	119357582	-	Cpha266_1785	-	putative PAS/PAC sensor protein
1726	 41.32	-1	2033353..2033715	-	120	119357583	-	Cpha266_1786	-	response regulator receiver protein
1727	 44.56	0	2033726..2036521	-	931	119357584	-	Cpha266_1787	-	PAS/PAC sensor hybrid histidine kinase
1728	 48.55	0	2037132..2040128	+	998	119357585	-	Cpha266_1788	-	putative PAS/PAC sensor protein
1729	 48.34	0	2040468..2042186	+	572	119357586	-	Cpha266_1789	-	extracellular solute-binding protein
1730	 46.06	0	2042302..2042796	+	164	119357587	-	Cpha266_1790	-	2-vinyl bacteriochlorophyllide hydratase
1731	 49.25	0	2042800..2043804	+	334	119357588	-	Cpha266_1791	-	chlorophyll synthesis pathway, BchC
1732	 47.52	0	2043817..2044923	+	368	119357589	-	Cpha266_1792	-	chlorophyllide reductase iron protein subunit X
1733	 47.67	0	2044920..2046746	-	608	119357590	-	Cpha266_1793	-	GTP-binding protein TypA
1734	 47.15	0	2046988..2047776	+	262	119357591	-	Cpha266_1794	-	cytochrome c assembly protein
1735	 45.54	0	2047899..2049176	+	425	119357592	hemA	Cpha266_1795	-	glutamyl-tRNA reductase
1736	 48.94	0	2049195..2050136	+	313	119357593	-	Cpha266_1796	-	porphobilinogen deaminase
1737	 47.62	0	2050136..2050891	+	251	119357594	-	Cpha266_1797	-	uroporphyrinogen-III synthase
1738	 49.90	0	2050917..2051405	-	162	119357595	-	Cpha266_1798	-	hypothetical protein
1739	 48.52	0	2051405..2052181	-	258	119357596	-	Cpha266_1799	-	histidinol-phosphate phosphatase
1740	 48.35	0	2052458..2053216	-	252	119357597	-	Cpha266_1800	-	hypothetical protein
1741	 45.38	0	2053271..2055370	-	699	119357598	-	Cpha266_1801	-	integral membrane sensor hybrid histidine kinase
1742	 47.73	0	2055373..2056692	-	439	119357599	-	Cpha266_1802	-	amine oxidase
1743	 44.58	0	2056689..2057684	-	331	119357600	-	Cpha266_1803	-	hypothetical protein
1744	 51.27	0	2058016..2059002	+	328	119357601	-	Cpha266_1804	-	delta-aminolevulinic acid dehydratase
1745	 53.56	+1	2059023..2060273	+	416	119357602	-	Cpha266_1805	-	chorismate synthase
1746	 50.86	0	2060280..2061089	-	269	119357603	-	Cpha266_1806	-	serine O-acetyltransferase
1747	 49.84	0	2061665..2062900	+	411	119357604	-	Cpha266_1807	-	hypothetical protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.