IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1594	 50.69	0	1877655..1879475	-	606	119357451	aspS	Cpha266_1650	-	aspartyl-tRNA synthetase
1595	 49.82	0	1879571..1880134	-	187	119357452	-	Cpha266_1651	-	DNA polymerase III, gamma/tau subunit
1596	 47.24	0	1880134..1881327	-	397	119357453	-	Cpha266_1652	-	DNA polymerase III, subunits gamma and tau
1597	 44.81	0	1881332..1882681	-	449	119357454	-	Cpha266_1653	-	putative ribonuclease BN
1598	 46.60	0	1882681..1883931	-	416	119357455	-	Cpha266_1654	-	major facilitator transporter
1599	 47.44	0	1883977..1884678	-	233	119357456	-	Cpha266_1655	-	phosphoribosylformylglycinamidine synthase I
1600	 41.76	-1	1884692..1884952	-	86	119357457	-	Cpha266_1656	-	phosphoribosylformylglycinamidine synthase, purS
1601	 47.57	0	1884981..1885781	-	266	119357458	-	Cpha266_1657	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1602	 48.44	0	1885910..1886743	-	277	119357459	panB	Cpha266_1658	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1603	 47.41	0	1886755..1887564	-	269	119357460	-	Cpha266_1659	-	biotin/lipoate A/B protein ligase
1604	 44.05	-1	1887732..1888319	-	195	119357461	-	Cpha266_1660	-	hypothetical protein
1605	 46.51	0	1888759..1889016	-	85	119357462	-	Cpha266_1661	-	hypothetical protein
1606	 47.53	0	1889285..1890376	+	363	119357463	-	Cpha266_1662	-	D-alanine--D-alanine ligase
1607	 47.15	0	1890381..1890959	+	192	119357464	-	Cpha266_1663	-	hypothetical protein
1608	 50.20	0	1891139..1892359	+	406	119357465	-	Cpha266_1664	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
1609	 46.09	0	1892412..1893806	+	464	119357466	-	Cpha266_1665	-	outer membrane efflux protein
1610	 47.89	0	1893833..1895089	+	418	119357467	-	Cpha266_1666	-	RND family efflux transporter MFP subunit
1611	 47.31	0	1895093..1895779	+	228	119357468	-	Cpha266_1667	-	ABC transporter related
1612	 48.34	0	1895776..1897041	+	421	119357469	-	Cpha266_1668	-	hypothetical protein
1613	 48.14	0	1897022..1898284	+	420	119357470	-	Cpha266_1669	-	hypothetical protein
1614	 47.21	0	1898302..1899339	-	345	119357471	-	Cpha266_1670	-	hypothetical protein
1615	 49.71	0	1899662..1900351	+	229	119357472	-	Cpha266_1671	-	OmpA/MotB domain-containing protein
1616	 48.48	0	1900548..1900943	+	131	119357473	-	Cpha266_1672	-	hypothetical protein
1617	 50.71	0	1901049..1902101	-	350	119357474	-	Cpha266_1673	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1618	 48.27	0	1902273..1903256	+	327	119357475	-	Cpha266_1674	-	ribose-phosphate pyrophosphokinase
1619	 49.41	0	1903291..1903887	+	198	119357476	-	Cpha266_1675	-	50S ribosomal protein L25/general stress protein Ctc
1620	 50.03	0	1904027..1905511	+	494	119357477	-	Cpha266_1676	-	binding-protein-dependent transport systems inner membrane component
1621	 53.54	+1	1905514..1906092	+	192	119357478	-	Cpha266_1677	-	NUDIX hydrolase
1622	 47.10	0	1906105..1906380	+	91	119357479	-	Cpha266_1678	-	hypothetical protein
1623	 49.27	0	1906542..1907426	+	294	119357480	-	Cpha266_1679	-	3-beta hydroxysteroid dehydrogenase/isomerase
1624	 52.03	0	1907430..1908884	-	484	119357481	-	Cpha266_1680	-	Pep581 peptidase. metallo peptidase. MEROPS family M20C
1625	 51.32	0	1909211..1909438	+	75	119357482	-	Cpha266_1681	-	hypothetical protein
1626	 48.50	0	1909724..1910956	+	410	119357483	-	Cpha266_1682	-	extracellular ligand-binding receptor
1627	 51.53	0	1910995..1911879	+	294	119357484	-	Cpha266_1683	-	inner-membrane translocator
1628	 52.01	0	1911891..1913780	+	629	119357485	-	Cpha266_1684	-	ABC transporter related
1629	 52.64	0	1913799..1914518	+	239	119357486	-	Cpha266_1685	-	ABC transporter related
1630	 50.56	0	1914550..1915083	-	177	119357487	-	Cpha266_1686	-	hypothetical protein
1631	 47.69	0	1915686..1916075	+	129	119357488	-	Cpha266_1687	-	hypothetical protein
1632	 51.54	0	1916244..1916666	-	140	119357489	-	Cpha266_1688	-	hypothetical protein
1633	 52.78	0	1917651..1918010	-	119	119357490	-	Cpha266_1691	-	hypothetical protein
1634	 48.96	0	1918296..1919261	-	321	119357491	-	Cpha266_1692	-	hypothetical protein
1635	 52.13	0	1919546..1920412	-	288	119357492	ubiA	Cpha266_1693	-	prenyltransferase
1636	 51.02	0	1920505..1920798	-	97	119357493	-	Cpha266_1694	-	hypothetical protein
1637	 53.90	+1	1920806..1921228	-	140	119357494	-	Cpha266_1695	-	hypothetical protein
1638	 45.38	0	1921779..1922027	+	82	119357495	-	Cpha266_1697	-	prevent-host-death family protein
1639	 53.76	+1	1922038..1923021	-	327	119357496	-	Cpha266_1698	-	integrase catalytic subunit
1640	 50.21	0	1923051..1923536	-	161	119357497	-	Cpha266_1699	-	transposase IS3/IS911 family protein
1641	 42.24	-1	1923747..1924049	+	100	119357498	-	Cpha266_1700	-	hypothetical protein
1642	 41.99	-1	1924066..1924446	+	126	119357499	-	Cpha266_1701	-	helix-turn-helix domain-containing protein
1643	 40.62	-1	1924860..1925312	+	150	119357500	-	Cpha266_1702	-	hypothetical protein
1644	 39.30	-2	1925324..1925524	+	66	119357501	-	Cpha266_1703	-	hypothetical protein
1645	 39.37	-2	1925765..1926559	-	264	119357502	-	Cpha266_1704	-	hypothetical protein
1646	 55.30	+1	1926620..1930885	-	1421	119357503	-	Cpha266_1705	-	hypothetical protein
1647	 51.70	0	1930889..1932331	-	480	119357504	-	Cpha266_1706	-	putative transcriptional regulator
1648	 42.81	-1	1932519..1933415	-	298	119357505	-	Cpha266_1707	-	hypothetical protein
1649	 43.56	-1	1933405..1936650	-	1081	119357506	-	Cpha266_1708	-	hypothetical protein
1650	 45.39	0	1936647..1937699	-	350	119357507	-	Cpha266_1709	-	zinc finger, CHC2-family protein
1651	 49.00	0	1937703..1938947	-	414	119357508	-	Cpha266_1710	-	restriction modification system DNA specificity subunit
1652	 51.11	0	1938953..1939807	-	284	119357509	dinD	Cpha266_1711	-	DNA-damage-inducible protein D
1653	 58.57	+2	1940022..1942010	-	662	119357510	-	Cpha266_1712	-	N-6 DNA methylase
1654	 47.96	0	1942300..1943085	-	261	119357511	-	Cpha266_1713	-	hypothetical protein
1655	 46.18	0	1943085..1943582	-	165	119357512	-	Cpha266_1714	-	hypothetical protein
1656	 49.33	0	1943652..1944845	+	397	119357513	-	Cpha266_1715	-	appr-1-p processing domain-containing protein
1657	 49.31	0	1945048..1945335	+	95	119357514	-	Cpha266_1716	-	hypothetical protein
1658	 47.86	0	1945513..1946235	-	240	119357515	-	Cpha266_1717	-	curli production assembly/transport component CsgG
1659	 49.19	0	1946605..1947342	+	245	119357516	-	Cpha266_1718	-	hypothetical protein
1660	 53.40	+1	1947571..1947879	-	102	119357517	-	Cpha266_1719	-	thioredoxin
1661	 51.32	0	1947901..1948356	-	151	119357518	-	Cpha266_1720	-	OsmC family protein
1662	 52.27	0	1948838..1951039	-	733	119357519	-	Cpha266_1722	-	ComEC/Rec2-related protein
1663	 50.00	0	1951151..1952020	+	289	119357520	-	Cpha266_1723	-	5,10-methylenetetrahydrofolate reductase
1664	 50.00	0	1952042..1953349	-	435	119357521	-	Cpha266_1724	-	diaminopimelate decarboxylase
1665	 40.98	-1	1953438..1953620	+	60	119357522	rpmG	Cpha266_1725	-	50S ribosomal protein L33
1666	 44.69	0	1953925..1954725	+	266	119357523	-	Cpha266_1726	-	hypothetical protein
1667	 48.44	0	1955288..1955479	-	63	119357524	-	Cpha266_1727	-	hypothetical protein
1668	 47.88	0	1955526..1956350	-	274	119357525	-	Cpha266_1728	-	hypothetical protein
1669	 52.94	0	1956380..1957537	-	385	119357526	-	Cpha266_1729	-	aminotransferase
1670	 47.64	0	1957617..1958189	-	190	119357527	-	Cpha266_1730	-	hypothetical protein
1671	 44.57	0	1958239..1958496	-	85	119357528	-	Cpha266_1731	-	hypothetical protein
1672	 52.67	0	1958523..1959008	-	161	119357529	-	Cpha266_1732	-	hypothetical protein
1673	 51.87	0	1959010..1960077	-	355	119357530	-	Cpha266_1733	-	ferredoxin
1674	 45.38	0	1960217..1961038	-	273	119357531	-	Cpha266_1734	-	hypothetical protein
1675	 50.09	0	1961102..1961674	-	190	119357532	-	Cpha266_1735	-	hypothetical protein
1676	 45.45	0	1961687..1962115	-	142	119357533	-	Cpha266_1736	-	hypothetical protein
1677	 48.12	0	1962090..1963394	-	434	119357534	-	Cpha266_1737	-	GTP-binding protein, HSR1-related
1678	 44.69	0	1963607..1964539	+	310	119357535	-	Cpha266_1738	-	squalene/phytoene synthase
1679	 48.10	0	1964587..1966116	+	509	119357536	lysS	Cpha266_1739	-	lysyl-tRNA synthetase
1680	 45.60	0	1966158..1966850	+	230	119357537	-	Cpha266_1740	-	putative transcriptional regulator
1681	 48.88	0	1966817..1967845	-	342	119357538	-	Cpha266_1741	-	NAD-dependent epimerase/dehydratase
1682	 50.10	0	1968204..1969652	+	482	119357539	-	Cpha266_1742	-	hypothetical protein
1683	 47.62	0	1969672..1970742	+	356	119357540	-	Cpha266_1743	-	hypothetical protein
1684	 47.50	0	1970807..1971625	+	272	119357541	-	Cpha266_1744	-	transglutaminase domain-containing protein
1685	 42.61	-1	1971731..1972258	-	175	119357542	-	Cpha266_1745	-	hypothetical protein
1686	 49.52	0	1972472..1973812	-	446	119357543	-	Cpha266_1746	-	TolC family type I secretion outer membrane protein
1687	 53.47	+1	1973891..1975072	-	393	119357544	-	Cpha266_1747	-	secretion protein HlyD family protein
1688	 52.04	0	1975105..1976820	-	571	119357545	-	Cpha266_1748	-	type I secretion system ATPase
1689	 53.32	+1	1976830..1978515	-	561	119357546	-	Cpha266_1749	-	type I secretion system ATPase
1690	 51.78	0	1978730..1990663	-	3977	119357547	-	Cpha266_1750	-	5'-nucleotidase domain-containing protein
1691	 50.89	0	1991873..1993444	+	523	119357548	-	Cpha266_1751	-	integrase catalytic subunit
1692	 51.25	0	1993450..1994286	+	278	119357549	-	Cpha266_1752	-	IstB ATP binding domain-containing protein
1693	 49.07	0	1994305..1994844	+	179	119357550	-	Cpha266_1753	-	YapH protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.