IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1550	 44.94	0	1827296..1827700	+	134	119357407	-	Cpha266_1606	-	hypothetical protein
1551	 55.26	+1	1827876..1830356	-	826	119357408	-	Cpha266_1607	-	hypothetical protein
1552	 55.97	+1	1830349..1830750	-	133	119357409	-	Cpha266_1608	-	hypothetical protein
1553	 52.60	0	1830750..1831133	-	127	119357410	-	Cpha266_1609	-	hypothetical protein
1554	 53.00	0	1831235..1832317	-	360	119357411	-	Cpha266_1610	-	hypothetical protein
1555	 54.68	+1	1832461..1832877	-	138	119357412	-	Cpha266_1611	-	hypothetical protein
1556	 54.50	+1	1833055..1833942	-	295	119357413	-	Cpha266_1612	-	hypothetical protein
1557	 59.27	+2	1834293..1835090	-	265	119357414	-	Cpha266_1613	-	hypothetical protein
1558	 47.95	0	1835686..1837443	+	585	119357415	-	Cpha266_1614	-	restriction endonuclease
1559	 46.83	0	1837573..1838439	+	288	119357416	-	Cpha266_1615	-	restriction endonuclease
1560	 45.87	0	1838436..1838762	+	108	119357417	-	Cpha266_1616	-	hypothetical protein
1561	 44.12	0	1838789..1839409	+	206	119357418	-	Cpha266_1617	-	hypothetical protein
1562	 52.81	0	1840159..1840692	+	177	119357419	-	Cpha266_1618	-	hypothetical protein
1563	 53.69	+1	1841776..1842276	+	166	119357420	-	Cpha266_1619	-	DNA repair protein RadC
1564	 47.78	0	1842769..1843758	+	329	119357421	-	Cpha266_1620	-	hypothetical protein
1565	 57.65	+2	1843908..1844273	-	121	119357422	-	Cpha266_1621	-	hypothetical protein
1566	 54.66	+1	1844441..1844848	+	135	119357423	-	Cpha266_1622	-	hypothetical protein
1567	 56.51	+1	1844829..1845635	-	268	119357424	-	Cpha266_1623	-	hypothetical protein
1568	 48.22	0	1845842..1847218	-	458	119357425	-	Cpha266_1624	-	hypothetical protein
1569	 47.01	0	1847265..1847498	-	77	119357426	-	Cpha266_1625	-	phage transcriptional regulator, AlpA
1570	 37.85	-2	1847846..1848664	-	272	119357427	-	Cpha266_1626	-	hypothetical protein
1571	 51.98	0	1848779..1850038	-	419	119357428	-	Cpha266_1627	-	phage integrase family protein
1572	 49.40	0	1850897..1852390	+	497	119357429	-	Cpha266_1628	-	inosine-5'-monophosphate dehydrogenase
1573	 49.32	0	1852494..1856147	-	1217	119357430	-	Cpha266_1629	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
1574	 53.82	+1	1856541..1858400	-	619	119357431	-	Cpha266_1630	-	protoporphyrin IX magnesium-chelatase
1575	 50.73	0	1858397..1859557	-	386	119357432	-	Cpha266_1631	-	protoporphyrin IX magnesium-chelatase
1576	 51.79	0	1859760..1861211	-	483	119357433	-	Cpha266_1632	-	dihydrolipoamide dehydrogenase
1577	 50.43	0	1861241..1862293	+	350	119357434	-	Cpha266_1633	-	ribosomal large subunit pseudouridine synthase D
1578	 51.36	0	1862360..1862764	-	134	119357435	-	Cpha266_1634	-	signal peptide prediction
1579	 48.93	0	1862904..1863371	+	155	119357436	-	Cpha266_1635	-	nuclear protein SET
1580	 53.13	+1	1863449..1864150	+	233	119357437	-	Cpha266_1636	-	short-chain dehydrogenase/reductase SDR
1581	 45.83	0	1864259..1865122	+	287	119357438	-	Cpha266_1637	-	alpha/beta hydrolase fold
1582	 47.12	0	1865113..1865772	+	219	119357439	-	Cpha266_1638	-	thymidylate kinase
1583	 44.81	0	1865938..1867200	+	420	119357440	-	Cpha266_1639	-	hypothetical protein
1584	 47.53	0	1867239..1870394	+	1051	119357441	-	Cpha266_1640	-	beta-phosphoglucomutase family hydrolase
1585	 45.92	0	1870518..1871558	+	346	119357442	-	Cpha266_1641	-	queuosine biosynthesis protein
1586	 44.84	0	1871579..1872334	+	251	119357443	-	Cpha266_1642	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
1587	 46.49	0	1872604..1873044	+	146	119357444	-	Cpha266_1643	-	hypothetical protein
1588	 47.05	0	1873169..1874575	+	468	119357445	-	Cpha266_1644	-	radical SAM domain-containing protein
1589	 48.97	0	1875082..1875861	-	259	119357446	-	Cpha266_1645	-	integrase catalytic subunit
1590	 45.63	0	1876122..1876430	-	102	119357447	-	Cpha266_1646	-	transposase IS3/IS911 family protein
1591	 42.51	-1	1876460..1876666	-	68	119357448	-	Cpha266_1647	-	hypothetical protein
1592	 41.78	-1	1876641..1876865	-	74	119357449	-	Cpha266_1648	-	AbrB family transcriptional regulator
1593	 31.62	-2	1877181..1877414	-	77	119357450	-	Cpha266_1649	-	hypothetical protein
1594	 50.69	0	1877655..1879475	-	606	119357451	aspS	Cpha266_1650	-	aspartyl-tRNA synthetase
1595	 49.82	0	1879571..1880134	-	187	119357452	-	Cpha266_1651	-	DNA polymerase III, gamma/tau subunit
1596	 47.24	0	1880134..1881327	-	397	119357453	-	Cpha266_1652	-	DNA polymerase III, subunits gamma and tau
1597	 44.81	0	1881332..1882681	-	449	119357454	-	Cpha266_1653	-	putative ribonuclease BN
1598	 46.60	0	1882681..1883931	-	416	119357455	-	Cpha266_1654	-	major facilitator transporter
1599	 47.44	0	1883977..1884678	-	233	119357456	-	Cpha266_1655	-	phosphoribosylformylglycinamidine synthase I
1600	 41.76	-1	1884692..1884952	-	86	119357457	-	Cpha266_1656	-	phosphoribosylformylglycinamidine synthase, purS
1601	 47.57	0	1884981..1885781	-	266	119357458	-	Cpha266_1657	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1602	 48.44	0	1885910..1886743	-	277	119357459	panB	Cpha266_1658	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1603	 47.41	0	1886755..1887564	-	269	119357460	-	Cpha266_1659	-	biotin/lipoate A/B protein ligase
1604	 44.05	-1	1887732..1888319	-	195	119357461	-	Cpha266_1660	-	hypothetical protein
1605	 46.51	0	1888759..1889016	-	85	119357462	-	Cpha266_1661	-	hypothetical protein
1606	 47.53	0	1889285..1890376	+	363	119357463	-	Cpha266_1662	-	D-alanine--D-alanine ligase
1607	 47.15	0	1890381..1890959	+	192	119357464	-	Cpha266_1663	-	hypothetical protein
1608	 50.20	0	1891139..1892359	+	406	119357465	-	Cpha266_1664	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
1609	 46.09	0	1892412..1893806	+	464	119357466	-	Cpha266_1665	-	outer membrane efflux protein
1610	 47.89	0	1893833..1895089	+	418	119357467	-	Cpha266_1666	-	RND family efflux transporter MFP subunit
1611	 47.31	0	1895093..1895779	+	228	119357468	-	Cpha266_1667	-	ABC transporter related
1612	 48.34	0	1895776..1897041	+	421	119357469	-	Cpha266_1668	-	hypothetical protein
1613	 48.14	0	1897022..1898284	+	420	119357470	-	Cpha266_1669	-	hypothetical protein
1614	 47.21	0	1898302..1899339	-	345	119357471	-	Cpha266_1670	-	hypothetical protein
1615	 49.71	0	1899662..1900351	+	229	119357472	-	Cpha266_1671	-	OmpA/MotB domain-containing protein
1616	 48.48	0	1900548..1900943	+	131	119357473	-	Cpha266_1672	-	hypothetical protein
1617	 50.71	0	1901049..1902101	-	350	119357474	-	Cpha266_1673	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1618	 48.27	0	1902273..1903256	+	327	119357475	-	Cpha266_1674	-	ribose-phosphate pyrophosphokinase
1619	 49.41	0	1903291..1903887	+	198	119357476	-	Cpha266_1675	-	50S ribosomal protein L25/general stress protein Ctc
1620	 50.03	0	1904027..1905511	+	494	119357477	-	Cpha266_1676	-	binding-protein-dependent transport systems inner membrane component
1621	 53.54	+1	1905514..1906092	+	192	119357478	-	Cpha266_1677	-	NUDIX hydrolase
1622	 47.10	0	1906105..1906380	+	91	119357479	-	Cpha266_1678	-	hypothetical protein
1623	 49.27	0	1906542..1907426	+	294	119357480	-	Cpha266_1679	-	3-beta hydroxysteroid dehydrogenase/isomerase
1624	 52.03	0	1907430..1908884	-	484	119357481	-	Cpha266_1680	-	Pep581 peptidase. metallo peptidase. MEROPS family M20C
1625	 51.32	0	1909211..1909438	+	75	119357482	-	Cpha266_1681	-	hypothetical protein
1626	 48.50	0	1909724..1910956	+	410	119357483	-	Cpha266_1682	-	extracellular ligand-binding receptor
1627	 51.53	0	1910995..1911879	+	294	119357484	-	Cpha266_1683	-	inner-membrane translocator
1628	 52.01	0	1911891..1913780	+	629	119357485	-	Cpha266_1684	-	ABC transporter related
1629	 52.64	0	1913799..1914518	+	239	119357486	-	Cpha266_1685	-	ABC transporter related
1630	 50.56	0	1914550..1915083	-	177	119357487	-	Cpha266_1686	-	hypothetical protein
1631	 47.69	0	1915686..1916075	+	129	119357488	-	Cpha266_1687	-	hypothetical protein
1632	 51.54	0	1916244..1916666	-	140	119357489	-	Cpha266_1688	-	hypothetical protein
1633	 52.78	0	1917651..1918010	-	119	119357490	-	Cpha266_1691	-	hypothetical protein
1634	 48.96	0	1918296..1919261	-	321	119357491	-	Cpha266_1692	-	hypothetical protein
1635	 52.13	0	1919546..1920412	-	288	119357492	ubiA	Cpha266_1693	-	prenyltransferase
1636	 51.02	0	1920505..1920798	-	97	119357493	-	Cpha266_1694	-	hypothetical protein
1637	 53.90	+1	1920806..1921228	-	140	119357494	-	Cpha266_1695	-	hypothetical protein
1638	 45.38	0	1921779..1922027	+	82	119357495	-	Cpha266_1697	-	prevent-host-death family protein
1639	 53.76	+1	1922038..1923021	-	327	119357496	-	Cpha266_1698	-	integrase catalytic subunit
1640	 50.21	0	1923051..1923536	-	161	119357497	-	Cpha266_1699	-	transposase IS3/IS911 family protein
1641	 42.24	-1	1923747..1924049	+	100	119357498	-	Cpha266_1700	-	hypothetical protein
1642	 41.99	-1	1924066..1924446	+	126	119357499	-	Cpha266_1701	-	helix-turn-helix domain-containing protein
1643	 40.62	-1	1924860..1925312	+	150	119357500	-	Cpha266_1702	-	hypothetical protein
1644	 39.30	-2	1925324..1925524	+	66	119357501	-	Cpha266_1703	-	hypothetical protein
1645	 39.37	-2	1925765..1926559	-	264	119357502	-	Cpha266_1704	-	hypothetical protein
1646	 55.30	+1	1926620..1930885	-	1421	119357503	-	Cpha266_1705	-	hypothetical protein
1647	 51.70	0	1930889..1932331	-	480	119357504	-	Cpha266_1706	-	putative transcriptional regulator
1648	 42.81	-1	1932519..1933415	-	298	119357505	-	Cpha266_1707	-	hypothetical protein
1649	 43.56	-1	1933405..1936650	-	1081	119357506	-	Cpha266_1708	-	hypothetical protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.