IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1495	 37.97	-2	1761878..1762351	+	157	119357352	-	Cpha266_1550	-	hypothetical protein
1496	 43.78	-1	1762393..1762593	+	66	119357353	-	Cpha266_1551	-	hypothetical protein
1497	 52.54	0	1762610..1762963	+	117	119357354	-	Cpha266_1552	-	hypothetical protein
1498	 47.16	0	1762987..1765662	+	891	119357355	-	Cpha266_1553	-	hypothetical protein
1499	 47.74	0	1765665..1766129	-	154	119357356	-	Cpha266_1554	-	hypothetical protein
1500	 50.19	0	1766142..1766948	-	268	119357357	-	Cpha266_1555	-	hypothetical protein
1501	 51.25	0	1767096..1767932	-	278	119357358	-	Cpha266_1556	-	IstB ATP binding domain-containing protein
1502	 50.83	0	1767938..1769509	-	523	119357359	-	Cpha266_1557	-	integrase catalytic subunit
1503	 48.06	0	1769621..1770367	-	248	119357360	-	Cpha266_1558	-	hypothetical protein
1504	 47.05	0	1770572..1771096	+	174	119357361	-	Cpha266_1559	-	hypothetical protein
1505	 49.09	0	1771346..1772284	+	312	119357362	-	Cpha266_1560	-	hypothetical protein
1506	 52.41	0	1772304..1773671	-	455	119357363	-	Cpha266_1561	-	hypothetical protein
1507	 50.17	0	1773678..1775114	-	478	119357364	-	Cpha266_1562	-	RND efflux system outer membrane lipoprotein
1508	 48.34	0	1775155..1778340	-	1061	119357365	-	Cpha266_1563	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
1509	 48.38	0	1778450..1779559	-	369	119357366	-	Cpha266_1564	-	RND family efflux transporter MFP subunit
1510	 48.41	0	1779677..1780180	-	167	119357367	-	Cpha266_1565	-	methylated-DNA--protein-cysteine methyltransferase
1511	 48.21	0	1780578..1782587	-	669	119357368	-	Cpha266_1566	-	TPR repeat-containing protein
1512	 52.22	0	1782996..1784075	-	359	119357369	-	Cpha266_1567	-	NADH:flavin oxidoreductase/NADH oxidase
1513	 44.84	0	1784391..1784642	+	83	119357370	-	Cpha266_1568	-	hypothetical protein
1514	 47.47	0	1784778..1785647	+	289	119357371	-	Cpha266_1569	-	UbiA prenyltransferase
1515	 51.57	0	1786143..1787732	+	529	119357372	-	Cpha266_1570	-	glutamate synthase (NADPH) GltB2 subunit
1516	 48.50	0	1787793..1788293	+	166	119357373	-	Cpha266_1571	-	rubrerythrin
1517	 52.04	0	1788522..1788938	+	138	119357374	-	Cpha266_1572	-	hypothetical protein
1518	 52.17	0	1789424..1790182	+	252	119357375	-	Cpha266_1573	-	peptidase M50
1519	 55.35	+1	1790476..1791270	+	264	119357376	-	Cpha266_1574	-	sterol desaturase, putative
1520	 59.14	+2	1791275..1791739	-	154	119357377	-	Cpha266_1575	-	rhodanese domain-containing protein
1521	 50.76	0	1791726..1792385	-	219	119357378	-	Cpha266_1576	-	DNA polymerase III, epsilon subunit
1522	 49.78	0	1792935..1793858	-	307	119357379	-	Cpha266_1577	-	hypothetical protein
1523	 55.10	+1	1794072..1795022	-	316	119357380	-	Cpha266_1578	-	hypothetical protein
1524	 45.95	0	1795400..1795843	-	147	119357381	-	Cpha266_1579	-	hypothetical protein
1525	 56.28	+1	1796058..1796933	-	291	119357382	-	Cpha266_1580	-	heat shock protein HtpX
1526	 49.43	0	1797345..1797518	-	57	119357383	-	Cpha266_1581	-	hypothetical protein
1527	 48.90	0	1797922..1798467	+	181	119357384	-	Cpha266_1582	-	hypothetical protein
1528	 46.41	0	1798946..1799182	+	78	119357385	-	Cpha266_1583	-	hypothetical protein
1529	 47.97	0	1799210..1799824	+	204	119357386	-	Cpha266_1584	-	putative methyltransferase
1530	 52.88	0	1800277..1801212	+	311	119357387	-	Cpha266_1585	-	patatin
1531	 49.54	0	1801286..1802038	+	250	119357388	-	Cpha266_1586	-	hypothetical protein
1532	 43.85	-1	1802730..1803452	-	240	119357389	-	Cpha266_1587	-	hypothetical protein
1533	 48.98	0	1803926..1804417	-	163	119357390	-	Cpha266_1588	-	hypothetical protein
1534	 50.84	0	1804768..1805064	+	98	119357391	-	Cpha266_1590	-	hypothetical protein
1535	 54.04	+1	1805087..1805482	-	131	119357392	-	Cpha266_1591	-	biotin/lipoyl attachment domain-containing protein
1536	 49.77	0	1805494..1805712	-	72	119357393	-	Cpha266_1592	-	hypothetical protein
1537	 53.27	+1	1805718..1807262	-	514	119357394	-	Cpha266_1593	-	carboxyl transferase
1538	 53.50	+1	1807279..1808721	-	480	119357395	-	Cpha266_1594	-	oxaloacetate decarboxylase
1539	 52.05	0	1809842..1810669	+	275	119357396	-	Cpha266_1595	-	alpha/beta hydrolase fold
1540	 53.91	+1	1810868..1811659	-	263	119357397	-	Cpha266_1596	-	Beta-lactamase
1541	 48.16	0	1812283..1813341	+	352	119357398	-	Cpha266_1597	-	GTPase EngC
1542	 46.31	0	1814043..1814543	+	166	119357399	-	Cpha266_1598	-	GCN5-related N-acetyltransferase
1543	 43.40	-1	1814731..1815018	-	95	119357400	-	Cpha266_1599	-	hypothetical protein
1544	 57.61	+1	1815258..1816637	-	459	119357401	-	Cpha266_1600	-	hypothetical protein
1545	 57.99	+2	1816695..1817939	-	414	119357402	-	Cpha266_1601	-	hypothetical protein
1546	 49.95	0	1818591..1821833	+	1080	119357403	-	Cpha266_1602	-	helicase domain-containing protein
1547	 44.63	0	1821837..1825349	+	1170	119357404	-	Cpha266_1603	-	Eco57I restriction endonuclease
1548	 32.44	-2	1825412..1826536	+	374	119357405	-	Cpha266_1604	-	hypothetical protein
1549	 49.79	0	1826586..1827296	+	236	119357406	-	Cpha266_1605	-	hypothetical protein
1550	 44.94	0	1827296..1827700	+	134	119357407	-	Cpha266_1606	-	hypothetical protein
1551	 55.26	+1	1827876..1830356	-	826	119357408	-	Cpha266_1607	-	hypothetical protein
1552	 55.97	+1	1830349..1830750	-	133	119357409	-	Cpha266_1608	-	hypothetical protein
1553	 52.60	0	1830750..1831133	-	127	119357410	-	Cpha266_1609	-	hypothetical protein
1554	 53.00	0	1831235..1832317	-	360	119357411	-	Cpha266_1610	-	hypothetical protein
1555	 54.68	+1	1832461..1832877	-	138	119357412	-	Cpha266_1611	-	hypothetical protein
1556	 54.50	+1	1833055..1833942	-	295	119357413	-	Cpha266_1612	-	hypothetical protein
1557	 59.27	+2	1834293..1835090	-	265	119357414	-	Cpha266_1613	-	hypothetical protein
1558	 47.95	0	1835686..1837443	+	585	119357415	-	Cpha266_1614	-	restriction endonuclease
1559	 46.83	0	1837573..1838439	+	288	119357416	-	Cpha266_1615	-	restriction endonuclease
1560	 45.87	0	1838436..1838762	+	108	119357417	-	Cpha266_1616	-	hypothetical protein
1561	 44.12	0	1838789..1839409	+	206	119357418	-	Cpha266_1617	-	hypothetical protein
1562	 52.81	0	1840159..1840692	+	177	119357419	-	Cpha266_1618	-	hypothetical protein
1563	 53.69	+1	1841776..1842276	+	166	119357420	-	Cpha266_1619	-	DNA repair protein RadC
1564	 47.78	0	1842769..1843758	+	329	119357421	-	Cpha266_1620	-	hypothetical protein
1565	 57.65	+2	1843908..1844273	-	121	119357422	-	Cpha266_1621	-	hypothetical protein
1566	 54.66	+1	1844441..1844848	+	135	119357423	-	Cpha266_1622	-	hypothetical protein
1567	 56.51	+1	1844829..1845635	-	268	119357424	-	Cpha266_1623	-	hypothetical protein
1568	 48.22	0	1845842..1847218	-	458	119357425	-	Cpha266_1624	-	hypothetical protein
1569	 47.01	0	1847265..1847498	-	77	119357426	-	Cpha266_1625	-	phage transcriptional regulator, AlpA
1570	 37.85	-2	1847846..1848664	-	272	119357427	-	Cpha266_1626	-	hypothetical protein
1571	 51.98	0	1848779..1850038	-	419	119357428	-	Cpha266_1627	-	phage integrase family protein
1572	 49.40	0	1850897..1852390	+	497	119357429	-	Cpha266_1628	-	inosine-5'-monophosphate dehydrogenase
1573	 49.32	0	1852494..1856147	-	1217	119357430	-	Cpha266_1629	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
1574	 53.82	+1	1856541..1858400	-	619	119357431	-	Cpha266_1630	-	protoporphyrin IX magnesium-chelatase
1575	 50.73	0	1858397..1859557	-	386	119357432	-	Cpha266_1631	-	protoporphyrin IX magnesium-chelatase
1576	 51.79	0	1859760..1861211	-	483	119357433	-	Cpha266_1632	-	dihydrolipoamide dehydrogenase
1577	 50.43	0	1861241..1862293	+	350	119357434	-	Cpha266_1633	-	ribosomal large subunit pseudouridine synthase D
1578	 51.36	0	1862360..1862764	-	134	119357435	-	Cpha266_1634	-	signal peptide prediction
1579	 48.93	0	1862904..1863371	+	155	119357436	-	Cpha266_1635	-	nuclear protein SET
1580	 53.13	+1	1863449..1864150	+	233	119357437	-	Cpha266_1636	-	short-chain dehydrogenase/reductase SDR
1581	 45.83	0	1864259..1865122	+	287	119357438	-	Cpha266_1637	-	alpha/beta hydrolase fold
1582	 47.12	0	1865113..1865772	+	219	119357439	-	Cpha266_1638	-	thymidylate kinase
1583	 44.81	0	1865938..1867200	+	420	119357440	-	Cpha266_1639	-	hypothetical protein
1584	 47.53	0	1867239..1870394	+	1051	119357441	-	Cpha266_1640	-	beta-phosphoglucomutase family hydrolase
1585	 45.92	0	1870518..1871558	+	346	119357442	-	Cpha266_1641	-	queuosine biosynthesis protein
1586	 44.84	0	1871579..1872334	+	251	119357443	-	Cpha266_1642	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
1587	 46.49	0	1872604..1873044	+	146	119357444	-	Cpha266_1643	-	hypothetical protein
1588	 47.05	0	1873169..1874575	+	468	119357445	-	Cpha266_1644	-	radical SAM domain-containing protein
1589	 48.97	0	1875082..1875861	-	259	119357446	-	Cpha266_1645	-	integrase catalytic subunit
1590	 45.63	0	1876122..1876430	-	102	119357447	-	Cpha266_1646	-	transposase IS3/IS911 family protein
1591	 42.51	-1	1876460..1876666	-	68	119357448	-	Cpha266_1647	-	hypothetical protein
1592	 41.78	-1	1876641..1876865	-	74	119357449	-	Cpha266_1648	-	AbrB family transcriptional regulator
1593	 31.62	-2	1877181..1877414	-	77	119357450	-	Cpha266_1649	-	hypothetical protein
1594	 50.69	0	1877655..1879475	-	606	119357451	aspS	Cpha266_1650	-	aspartyl-tRNA synthetase
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.