IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1425	 38.35	-2	1673503..1673781	-	92	119357282	-	Cpha266_1475	-	hypothetical protein
1426	 59.74	+2	1673986..1674765	-	259	119357283	-	Cpha266_1476	-	hypothetical protein
1427	 53.25	+1	1674997..1675503	+	168	119357284	-	Cpha266_1477	-	hypothetical protein
1428	 44.37	0	1675786..1676220	+	144	119357285	-	Cpha266_1478	-	transposase
1429	 41.83	-1	1677027..1678238	+	403	119357286	-	Cpha266_1480	-	hypothetical protein
1430	 51.39	0	1678623..1679879	-	418	119357287	-	Cpha266_1481	-	RNA-directed DNA polymerase (Reverse transcriptase)
1431	 49.90	0	1680674..1682248	+	524	119357288	-	Cpha266_1482	-	integrase catalytic subunit
1432	 49.67	0	1682263..1683009	+	248	119357289	-	Cpha266_1483	-	IstB ATP binding domain-containing protein
1433	 58.11	+2	1683110..1683997	-	295	119357290	-	Cpha266_1484	-	hypothetical protein
1434	 52.14	0	1684063..1684833	-	256	119357291	-	Cpha266_1485	-	putative reverse transcriptase/maturase family protein
1435	 57.30	+1	1685483..1686454	-	323	119357292	-	Cpha266_1487	-	hypothetical protein
1436	 48.28	0	1687238..1688254	+	338	119357293	-	Cpha266_1489	-	regulatory protein, ArsR
1437	 42.31	-1	1688873..1691101	-	742	119357294	-	Cpha266_1490	-	hypothetical protein
1438	 53.56	+1	1691163..1692650	-	495	119357295	-	Cpha266_1491	-	N-6 DNA methylase
1439	 41.60	-1	1692656..1694095	-	479	119357296	-	Cpha266_1492	-	restriction modification system DNA specificity subunit
1440	 53.14	+1	1694118..1694849	-	243	119357297	-	Cpha266_1493	-	phage Gp37Gp68 family protein
1441	 30.64	-2	1694849..1695961	-	370	119357298	-	Cpha266_1494	-	hypothetical protein
1442	 54.29	+1	1695958..1698753	-	931	119357299	-	Cpha266_1495	-	type III restriction enzyme, res subunit
1443	 30.81	-2	1699062..1699616	-	184	119357300	-	Cpha266_1496	-	hypothetical protein
1444	 55.72	+1	1701458..1702252	-	264	119357301	-	Cpha266_1499	-	hypothetical protein
1445	 56.28	+1	1702276..1702458	-	60	119357302	-	Cpha266_1500	-	hypothetical protein
1446	 53.35	+1	1702470..1704038	-	522	119357303	-	Cpha266_1501	-	hypothetical protein
1447	 52.77	0	1704041..1704889	-	282	119357304	-	Cpha266_1502	-	Type II site-specific deoxyribonuclease
1448	 49.56	0	1705018..1705356	-	112	119357305	-	Cpha266_1503	-	hypothetical protein
1449	 49.51	0	1705417..1705923	-	168	119357306	-	Cpha266_1504	-	PilT domain-containing protein
1450	 50.09	0	1705920..1707071	-	383	119357307	-	Cpha266_1505	-	hypothetical protein
1451	 53.65	+1	1707504..1709024	-	506	119357308	-	Cpha266_1506	-	hypothetical protein
1452	 56.51	+1	1709292..1710473	-	393	119357309	-	Cpha266_1507	-	RND family efflux transporter MFP subunit
1453	 52.75	0	1710475..1712838	-	787	119357310	-	Cpha266_1508	-	hypothetical protein
1454	 52.48	0	1712846..1713592	-	248	119357311	-	Cpha266_1509	-	ABC transporter related
1455	 53.49	+1	1713892..1715379	-	495	119357312	-	Cpha266_1510	-	amino acid permease-associated region
1456	 53.24	+1	1715532..1719188	-	1218	119357313	-	Cpha266_1511	-	FAD linked oxidase domain-containing protein
1457	 53.37	+1	1719617..1720774	-	385	119357314	-	Cpha266_1512	-	DegT/DnrJ/EryC1/StrS aminotransferase
1458	 50.49	0	1720791..1721921	-	376	119357315	-	Cpha266_1513	-	iron-containing alcohol dehydrogenase
1459	 47.72	0	1721945..1722646	-	233	119357316	-	Cpha266_1514	-	acylneuraminate cytidylyltransferase
1460	 46.71	0	1722677..1723633	-	318	119357317	-	Cpha266_1515	-	hypothetical protein
1461	 49.15	0	1723636..1724697	-	353	119357318	-	Cpha266_1516	-	hypothetical protein
1462	 40.76	-1	1724920..1725660	-	246	119357319	-	Cpha266_1517	-	hypothetical protein
1463	 44.44	0	1725647..1726501	-	284	119357320	-	Cpha266_1518	-	DNA methylase N-4/N-6 domain-containing protein
1464	 46.43	0	1727075..1728907	+	610	119357321	-	Cpha266_1519	-	AMP-dependent synthetase and ligase
1465	 50.72	0	1729391..1730287	-	298	119357322	-	Cpha266_1520	-	HhH-GPD family protein
1466	 45.45	0	1730469..1730831	-	120	119357323	rplS	Cpha266_1521	-	50S ribosomal protein L19
1467	 49.43	0	1730861..1731562	-	233	119357324	trmD	Cpha266_1522	-	tRNA (guanine-N(1)-)-methyltransferase
1468	 46.23	0	1731604..1732107	-	167	119357325	-	Cpha266_1523	-	16S rRNA processing protein RimM
1469	 48.28	0	1732129..1732536	-	135	119357326	rpsP	Cpha266_1524	-	30S ribosomal protein S16
1470	 47.78	0	1732576..1733925	-	449	119357327	-	Cpha266_1525	-	signal recognition particle subunit FFH/SRP54 (srp54)
1471	 46.95	0	1734105..1735088	+	327	119357328	-	Cpha266_1526	-	rfaE bifunctional protein
1472	 44.91	0	1735060..1735698	-	212	119357329	-	Cpha266_1527	-	hypothetical protein
1473	 44.75	0	1735748..1736404	-	218	119357330	-	Cpha266_1528	-	cyclase/dehydrase
1474	 47.16	0	1736450..1738105	-	551	119357331	-	Cpha266_1529	-	C-terminal processing peptidase-3
1475	 47.20	0	1738963..1739445	-	160	119357332	-	Cpha266_1530	-	endoribonuclease L-PSP
1476	 48.04	0	1739791..1740429	+	212	119357333	-	Cpha266_1531	-	thiamine monophosphate synthase
1477	 49.11	0	1740426..1741046	+	206	119357334	-	Cpha266_1532	-	thiamine-phosphate pyrophosphorylase
1478	 47.92	0	1741050..1741865	+	271	119357335	-	Cpha266_1533	-	phosphomethylpyrimidine kinase
1479	 44.92	0	1741870..1743207	-	445	119357336	-	Cpha266_1534	-	UDP-glucose 6-dehydrogenase
1480	 43.82	-1	1743492..1744340	-	282	119357337	-	Cpha266_1535	-	hypothetical protein
1481	 44.96	0	1744322..1745026	-	234	119357338	-	Cpha266_1536	-	hypothetical protein
1482	 47.55	0	1745114..1746625	-	503	119357339	-	Cpha266_1537	-	leucyl aminopeptidase
1483	 45.63	0	1746650..1747714	-	354	119357340	-	Cpha266_1538	-	phosphoesterase domain-containing protein
1484	 43.96	-1	1748156..1749247	+	363	119357341	-	Cpha266_1539	-	radical SAM protein
1485	 43.67	-1	1749264..1750037	+	257	119357342	-	Cpha266_1540	-	hypothetical protein
1486	 46.73	0	1750051..1750707	+	218	119357343	-	Cpha266_1541	-	adenylate kinase
1487	 46.12	0	1750776..1753208	+	810	119357344	-	Cpha266_1542	-	primosomal protein N'
1488	 46.71	0	1753302..1753802	+	166	119357345	-	Cpha266_1543	-	DoxX family protein
1489	 45.71	0	1753829..1754329	-	166	119357346	-	Cpha266_1544	-	3-dehydroquinate dehydratase
1490	 47.04	0	1754357..1755844	-	495	119357347	hslU	Cpha266_1545	-	ATP-dependent protease ATP-binding subunit
1491	 47.46	0	1755899..1756450	-	183	119357348	-	Cpha266_1546	-	ATP-dependent protease peptidase subunit
1492	 44.12	0	1756464..1757918	-	484	119357349	-	Cpha266_1547	-	RNA polymerase, sigma 54 subunit, RpoN
1493	 43.98	-1	1757918..1758490	-	190	119357350	-	Cpha266_1548	-	hypothetical protein
1494	 46.52	0	1758925..1761396	-	823	119357351	-	Cpha266_1549	-	PAS/PAC sensor hybrid histidine kinase
1495	 37.97	-2	1761878..1762351	+	157	119357352	-	Cpha266_1550	-	hypothetical protein
1496	 43.78	-1	1762393..1762593	+	66	119357353	-	Cpha266_1551	-	hypothetical protein
1497	 52.54	0	1762610..1762963	+	117	119357354	-	Cpha266_1552	-	hypothetical protein
1498	 47.16	0	1762987..1765662	+	891	119357355	-	Cpha266_1553	-	hypothetical protein
1499	 47.74	0	1765665..1766129	-	154	119357356	-	Cpha266_1554	-	hypothetical protein
1500	 50.19	0	1766142..1766948	-	268	119357357	-	Cpha266_1555	-	hypothetical protein
1501	 51.25	0	1767096..1767932	-	278	119357358	-	Cpha266_1556	-	IstB ATP binding domain-containing protein
1502	 50.83	0	1767938..1769509	-	523	119357359	-	Cpha266_1557	-	integrase catalytic subunit
1503	 48.06	0	1769621..1770367	-	248	119357360	-	Cpha266_1558	-	hypothetical protein
1504	 47.05	0	1770572..1771096	+	174	119357361	-	Cpha266_1559	-	hypothetical protein
1505	 49.09	0	1771346..1772284	+	312	119357362	-	Cpha266_1560	-	hypothetical protein
1506	 52.41	0	1772304..1773671	-	455	119357363	-	Cpha266_1561	-	hypothetical protein
1507	 50.17	0	1773678..1775114	-	478	119357364	-	Cpha266_1562	-	RND efflux system outer membrane lipoprotein
1508	 48.34	0	1775155..1778340	-	1061	119357365	-	Cpha266_1563	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
1509	 48.38	0	1778450..1779559	-	369	119357366	-	Cpha266_1564	-	RND family efflux transporter MFP subunit
1510	 48.41	0	1779677..1780180	-	167	119357367	-	Cpha266_1565	-	methylated-DNA--protein-cysteine methyltransferase
1511	 48.21	0	1780578..1782587	-	669	119357368	-	Cpha266_1566	-	TPR repeat-containing protein
1512	 52.22	0	1782996..1784075	-	359	119357369	-	Cpha266_1567	-	NADH:flavin oxidoreductase/NADH oxidase
1513	 44.84	0	1784391..1784642	+	83	119357370	-	Cpha266_1568	-	hypothetical protein
1514	 47.47	0	1784778..1785647	+	289	119357371	-	Cpha266_1569	-	UbiA prenyltransferase
1515	 51.57	0	1786143..1787732	+	529	119357372	-	Cpha266_1570	-	glutamate synthase (NADPH) GltB2 subunit
1516	 48.50	0	1787793..1788293	+	166	119357373	-	Cpha266_1571	-	rubrerythrin
1517	 52.04	0	1788522..1788938	+	138	119357374	-	Cpha266_1572	-	hypothetical protein
1518	 52.17	0	1789424..1790182	+	252	119357375	-	Cpha266_1573	-	peptidase M50
1519	 55.35	+1	1790476..1791270	+	264	119357376	-	Cpha266_1574	-	sterol desaturase, putative
1520	 59.14	+2	1791275..1791739	-	154	119357377	-	Cpha266_1575	-	rhodanese domain-containing protein
1521	 50.76	0	1791726..1792385	-	219	119357378	-	Cpha266_1576	-	DNA polymerase III, epsilon subunit
1522	 49.78	0	1792935..1793858	-	307	119357379	-	Cpha266_1577	-	hypothetical protein
1523	 55.10	+1	1794072..1795022	-	316	119357380	-	Cpha266_1578	-	hypothetical protein
1524	 45.95	0	1795400..1795843	-	147	119357381	-	Cpha266_1579	-	hypothetical protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.