IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.61   STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
95	 46.50	0	118798..119526	-	242	119355952	-	Cpha266_0102	-	succinate dehydrogenase subunit C
96	 52.83	0	119559..120194	-	211	119355953	-	Cpha266_0103	-	cyclase family protein
97	 49.71	0	120331..120849	+	172	119355954	-	Cpha266_0104	-	hypothetical protein
98	 51.77	0	120911..121306	+	131	119355955	-	Cpha266_0105	-	histidine triad (HIT) protein
99	 54.93	+1	121365..124133	+	922	119355956	-	Cpha266_0106	-	aconitase
100	 52.04	0	124222..124515	+	97	119355957	-	Cpha266_0107	-	FeoA family protein
101	 49.65	0	124512..126650	+	712	119355958	-	Cpha266_0108	-	ferrous iron transport protein B
102	 51.71	0	126637..129036	-	799	119355959	-	Cpha266_0109	-	DNA topoisomerase I
103	 50.93	0	129197..130975	+	592	119355960	-	Cpha266_0110	-	N-acetylmuramoyl-L-alanine amidase
104	 53.09	0	131086..132072	+	328	119355961	-	Cpha266_0111	-	biotin--acetyl-CoA-carboxylase ligase
105	 52.37	0	132085..133098	+	337	119355962	-	Cpha266_0112	-	biotin synthase
106	 54.26	+1	133086..134270	+	394	119355963	-	Cpha266_0113	-	8-amino-7-oxononanoate synthase
107	 53.28	+1	134275..134961	+	228	119355964	-	Cpha266_0114	-	hypothetical protein
108	 53.51	+1	134949..135731	+	260	119355965	-	Cpha266_0115	-	biotin biosynthesis protein BioC
109	 52.44	0	135728..136402	+	224	119355966	bioD	Cpha266_0116	-	dithiobiotin synthetase
110	 55.63	+1	136426..137730	+	434	119355967	-	Cpha266_0117	-	aminotransferase
111	 44.13	0	138482..138694	-	70	119355968	-	Cpha266_0118	-	hypothetical protein
112	 53.15	+1	139074..140627	+	517	119355969	-	Cpha266_0119	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
113	 53.35	+1	140647..143508	+	953	119355970	-	Cpha266_0120	-	formate dehydrogenase
114	 50.68	0	143666..144622	+	318	119355971	-	Cpha266_0121	-	hypothetical protein
115	 46.39	0	144619..145047	+	142	119355972	-	Cpha266_0122	-	hypothetical protein
116	 49.41	0	145415..145924	+	169	119355973	-	Cpha266_0123	-	hypothetical protein
117	 52.08	0	146008..146487	+	159	119355974	-	Cpha266_0124	-	rhodanese domain-containing protein
118	 45.15	0	146655..146891	+	78	119355975	-	Cpha266_0125	-	SirA family protein
119	 52.87	0	147068..148495	+	475	119355976	-	Cpha266_0126	-	hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase
120	 49.40	0	149068..149403	+	111	119355977	-	Cpha266_0127	-	DsrC family protein
121	 50.96	0	149458..150711	+	417	119355978	-	Cpha266_0128	-	sulfite reductase, dissimilatory-type alpha subunit
122	 52.31	0	150794..151873	+	359	119355979	-	Cpha266_0129	-	sulfite reductase, dissimilatory-type beta subunit
123	 52.91	0	151889..153625	+	578	119355980	-	Cpha266_0130	-	putative glutamate synthase (NADPH) small subunit
124	 49.32	0	153669..154037	+	122	119355981	-	Cpha266_0131	-	hypothetical protein
125	 49.17	0	154089..154448	+	119	119355982	-	Cpha266_0132	-	DsrE family protein
126	 47.69	0	154452..154841	+	129	119355983	-	Cpha266_0133	-	DsrE family protein
127	 50.00	0	154917..155210	+	97	119355984	-	Cpha266_0134	-	DsrH family protein
128	 48.55	0	155257..155703	+	148	119355985	-	Cpha266_0135	-	hypothetical protein
129	 48.80	0	155700..156695	+	331	119355986	-	Cpha266_0136	-	nitrate reductase, gamma subunit
130	 49.64	0	156698..158347	+	549	119355987	-	Cpha266_0137	-	DsrK protein
131	 51.52	0	158337..158732	+	131	119355988	-	Cpha266_0138	-	hypothetical protein
132	 51.35	0	158732..159508	+	258	119355989	-	Cpha266_0139	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
133	 51.22	0	159518..160669	+	383	119355990	-	Cpha266_0140	-	polysulphide reductase, NrfD
134	 45.92	0	160906..161358	+	150	119355991	-	Cpha266_0141	-	porphyrin biosynthesis protein, putative
135	 50.25	0	161397..162785	+	462	119355992	-	Cpha266_0142	-	uroporphyrinogen-III C-methyltransferase
136	 53.09	0	162814..163638	+	274	119355993	-	Cpha266_0143	-	cobyrinic acid a,c-diamide synthase
137	 52.82	0	164039..165280	+	413	119355994	-	Cpha266_0144	-	twin-arginine translocation pathway signal
138	 52.18	0	165457..166257	+	266	119355995	-	Cpha266_0145	-	binding-protein-dependent transport systems inner membrane component
139	 51.66	0	166278..167090	+	270	119355996	-	Cpha266_0146	-	ABC transporter related
140	 50.24	0	167113..167934	+	273	119355997	-	Cpha266_0147	-	ABC transporter related
141	 53.68	+1	167957..168703	+	248	119355998	-	Cpha266_0148	-	cytochrome c, class I
142	 54.23	+1	168834..170876	+	680	119355999	-	Cpha266_0149	-	carbon-monoxide dehydrogenase (acceptor)
143	 56.22	+1	170931..171131	+	66	119356000	-	Cpha266_0150	-	hypothetical protein
144	 54.46	+1	171220..172038	-	272	119356001	mazG	Cpha266_0151	-	nucleoside triphosphate pyrophosphohydrolase
145	 56.85	+1	172146..172817	+	223	119356002	-	Cpha266_0152	-	short-chain dehydrogenase/reductase SDR
146	 59.17	+2	172835..174262	+	475	119356003	trmE	Cpha266_0153	-	tRNA modification GTPase TrmE
147	 51.75	0	174413..174754	+	113	119356004	-	Cpha266_0154	-	rhodanese domain-containing protein
148	 54.25	+1	175509..176249	-	246	119356005	-	Cpha266_0156	-	hypothetical protein
149	 51.73	0	176617..177366	+	249	119356006	-	Cpha266_0157	-	short-chain dehydrogenase/reductase SDR
150	 49.11	0	178891..181584	+	897	119356007	-	Cpha266_0160	-	TPR repeat-containing protein
151	 43.15	-1	181999..182385	-	128	119356008	-	Cpha266_0161	-	hypothetical protein
152	 45.05	0	182418..183893	-	491	119356009	-	Cpha266_0162	-	hypothetical protein
153	 47.35	0	183989..184252	-	87	119356010	-	Cpha266_0163	-	hypothetical protein
154	 44.16	0	184699..186093	+	464	119356011	-	Cpha266_0164	-	putative methyltransferase
155	 48.05	0	186106..188586	+	826	119356012	-	Cpha266_0165	-	multi-sensor hybrid histidine kinase
156	 47.58	0	188924..189253	+	109	119356013	-	Cpha266_0166	-	TPR repeat-containing protein
157	 51.32	0	189446..190774	-	442	119356014	-	Cpha266_0167	-	glutamate dehydrogenase (NAD/NADP)
158	 48.62	0	190837..191235	-	132	119356015	-	Cpha266_0168	-	hypothetical protein
159	 49.53	0	191334..192296	-	320	119356016	-	Cpha266_0169	-	hypothetical protein
160	 48.14	0	192336..193247	-	303	119356017	-	Cpha266_0170	-	monofunctional biosynthetic peptidoglycan transglycosylase
161	 54.68	+1	193428..193844	+	138	119356018	-	Cpha266_0171	-	C-type cytochrome, putative
162	 49.97	0	194046..195920	-	624	119356019	-	Cpha266_0172	-	DNA mismatch repair protein MutL
163	 52.00	0	196237..198909	+	890	119356020	-	Cpha266_0173	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
164	 48.86	0	198999..200054	-	351	119356021	-	Cpha266_0174	-	uroporphyrinogen decarboxylase
165	 47.82	0	200220..201068	-	282	119356022	-	Cpha266_0175	-	succinate dehydrogenase subunit C
166	 48.55	0	201087..202157	-	356	119356023	-	Cpha266_0176	-	succinate dehydrogenase subunit B
167	 50.35	0	202132..203835	-	567	119356024	-	Cpha266_0177	-	succinate dehydrogenase subunit A
168	 45.86	0	203961..204407	-	148	119356025	-	Cpha266_0178	-	signal-transduction protein
169	 51.40	0	204591..205232	-	213	119356026	-	Cpha266_0179	-	beta-lactamase domain-containing protein
170	 47.90	0	205257..205565	-	102	119356027	-	Cpha266_0180	-	hypothetical protein
171	 49.86	0	205588..208794	-	1068	119356028	-	Cpha266_0181	-	acriflavin resistance protein
172	 47.96	0	208787..209203	-	138	119356029	-	Cpha266_0182	-	hypothetical protein
173	 49.55	0	209243..210568	-	441	119356030	-	Cpha266_0183	-	outer membrane efflux protein
174	 40.94	-1	210575..210850	-	91	119356031	-	Cpha266_0184	-	hypothetical protein
175	 49.14	0	210923..211795	-	290	119356032	-	Cpha266_0185	-	alpha/beta hydrolase fold
176	 45.05	0	211792..212448	-	218	119356033	-	Cpha266_0186	-	isoprenylcysteine carboxyl methyltransferase
177	 44.10	-1	212717..213394	+	225	119356034	-	Cpha266_0187	-	hypothetical protein
178	 44.52	0	213535..214821	+	428	119356035	-	Cpha266_0188	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit
179	 47.16	0	214842..215615	+	257	119356036	-	Cpha266_0189	-	short-chain dehydrogenase/reductase SDR
180	 48.44	0	215789..216013	-	74	119356037	-	Cpha266_0190	-	hypothetical protein
181	 45.90	0	216052..216417	-	121	119356038	-	Cpha266_0191	-	hypothetical protein
182	 44.62	0	216448..217989	-	513	119356039	-	Cpha266_0192	-	hypothetical protein
183	 44.14	0	218179..218400	+	73	119356040	-	Cpha266_0193	-	hypothetical protein
184	 55.78	+1	218428..219309	-	293	119356041	-	Cpha266_0194	-	aldolase
185	 60.62	+2	219381..221498	-	705	119356042	-	Cpha266_0195	-	short chain dehydrogenase
186	 48.76	0	221628..222833	-	401	119356043	-	Cpha266_0196	-	hypothetical protein
187	 42.01	-1	222922..223140	-	72	119356044	-	Cpha266_0197	-	hypothetical protein
188	 41.51	-1	223223..223699	-	158	119356045	-	Cpha266_0198	-	2-vinyl bacteriochlorophyllide hydratase
189	 43.95	-1	224260..224598	-	112	119356046	-	Cpha266_0199	-	hypothetical protein
190	 42.43	-1	224962..226368	+	468	119356047	-	Cpha266_0200	-	radical SAM domain-containing protein
191	 42.26	-1	226551..227177	-	208	119356048	-	Cpha266_0201	-	proto-chlorophyllide reductase 57 kD subunit
192	 45.61	0	227469..227696	+	75	119356049	-	Cpha266_0202	-	chlorosome envelope protein B
193	 50.40	0	227835..228842	+	335	119356050	-	Cpha266_0203	-	aminoglycoside phosphotransferase
194	 51.07	0	228839..229774	+	311	119356051	-	Cpha266_0204	-	nucleotidyl transferase
48.61	MEAN

4.51	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.