IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1378	 52.07	0	1620982..1621947	-	321	119357235	-	Cpha266_1427	-	hypothetical protein
1379	 49.67	0	1622859..1623605	-	248	119357236	-	Cpha266_1428	-	IstB ATP binding domain-containing protein
1380	 50.03	0	1623620..1625194	-	524	119357237	-	Cpha266_1429	-	integrase catalytic subunit
1381	 48.11	0	1633227..1633517	-	96	119357238	-	Cpha266_1430	-	CRISPR-associated Cas2 family protein
1382	 50.39	0	1633521..1634552	-	343	119357239	-	Cpha266_1431	-	CRISPR-associated Cas1 family protein
1383	 53.02	0	1634549..1635193	-	214	119357240	-	Cpha266_1432	-	CRISPR-associated Cas4 family protein
1384	 45.41	0	1635196..1636296	-	366	119357241	-	Cpha266_1433	-	CRISPR-associated Csd2 family protein
1385	 43.13	-1	1636337..1638061	-	574	119357242	-	Cpha266_1434	-	CRISPR-associated RAMP Csd1 family protein
1386	 54.34	+1	1638058..1638771	-	237	119357243	-	Cpha266_1435	-	CRISPR-associated Cas5 family protein
1387	 53.24	+1	1638794..1640797	-	667	119357244	-	Cpha266_1436	-	CRISPR-associated helicase Cas3
1388	 49.60	0	1640784..1641035	-	83	119357245	-	Cpha266_1437	-	hypothetical protein
1389	 48.03	0	1641028..1642041	-	337	119357246	-	Cpha266_1438	-	hypothetical protein
1390	 53.88	+1	1642528..1642965	-	145	119357247	-	Cpha266_1439	-	hypothetical protein
1391	 48.95	0	1643339..1643575	+	78	119357248	-	Cpha266_1440	-	hypothetical protein
1392	 50.23	0	1643572..1643784	+	70	119357249	-	Cpha266_1441	-	YcfA family protein
1393	 39.91	-1	1643958..1644170	-	70	119357250	-	Cpha266_1442	-	hypothetical protein
1394	 56.29	+1	1644568..1645743	-	391	119357251	-	Cpha266_1443	-	hypothetical protein
1395	 55.41	+1	1645740..1649105	-	1121	119357252	-	Cpha266_1444	-	hypothetical protein
1396	 52.83	0	1649098..1649733	-	211	119357253	-	Cpha266_1445	-	hypothetical protein
1397	 55.21	+1	1649730..1651178	-	482	119357254	-	Cpha266_1446	-	hypothetical protein
1398	 45.41	0	1651241..1651687	-	148	119357255	-	Cpha266_1447	-	hypothetical protein
1399	 41.88	-1	1651774..1652241	-	155	119357256	-	Cpha266_1448	-	hypothetical protein
1400	 50.50	0	1652734..1653735	+	333	119357257	-	Cpha266_1449	-	bacteriochlorophyll/chlorophyll a synthase
1401	 46.91	0	1653735..1654139	+	134	119357258	-	Cpha266_1450	-	cell wall biosynthesis glycosyltransferase-like protein
1402	 51.25	0	1654121..1654957	-	278	119357259	-	Cpha266_1451	-	IstB ATP binding domain-containing protein
1403	 50.89	0	1654963..1656534	-	523	119357260	-	Cpha266_1452	-	integrase catalytic subunit
1404	 48.37	0	1656665..1656970	+	101	119357261	-	Cpha266_1453	-	glycosyl transferase
1405	 49.18	0	1656978..1657526	+	182	119357262	-	Cpha266_1454	-	hypothetical protein
1406	 48.20	0	1657634..1658050	+	138	119357263	-	Cpha266_1455	-	hypothetical protein
1407	 49.13	0	1658115..1658918	+	267	119357264	-	Cpha266_1456	-	zinc transporter ZupT
1408	 53.12	0	1659064..1659432	-	122	119357265	-	Cpha266_1457	-	dinitrogenase iron-molybdenum cofactor biosynthesis
1409	 53.86	+1	1659429..1660115	-	228	119357266	-	Cpha266_1458	-	hypothetical protein
1410	 49.60	0	1660235..1661236	-	333	119357267	-	Cpha266_1459	-	bifunctional methionine sulfoxide reductase B/A protein
1411	 51.41	0	1661427..1663589	+	720	119357268	-	Cpha266_1460	-	hypothetical protein
1412	 50.44	0	1663561..1663788	-	75	119357269	-	Cpha266_1461	-	hypothetical protein
1413	 52.28	0	1664068..1664352	-	94	119357270	-	Cpha266_1462	-	hypothetical protein
1414	 47.44	0	1664461..1665261	-	266	119357271	-	Cpha266_1463	-	oxidoreductase FAD/NAD(P)-binding subunit
1415	 54.03	+1	1665337..1665795	-	152	119357272	-	Cpha266_1464	-	activator of Hsp90 ATPase 1 family protein
1416	 49.63	0	1665899..1666567	-	222	119357273	-	Cpha266_1465	-	hypothetical protein
1417	 49.23	0	1666751..1666945	-	64	119357274	-	Cpha266_1466	-	hypothetical protein
1418	 55.63	+1	1667073..1667507	-	144	119357275	-	Cpha266_1467	-	hypothetical protein
1419	 56.79	+1	1667964..1668530	-	188	119357276	-	Cpha266_1469	-	nitroreductase
1420	 45.52	0	1668614..1669015	-	133	119357277	-	Cpha266_1470	-	hypothetical protein
1421	 46.19	0	1669238..1670038	-	266	119357278	-	Cpha266_1471	-	hypothetical protein
1422	 51.47	0	1670297..1671316	+	339	119357279	-	Cpha266_1472	-	hypothetical protein
1423	 53.57	+1	1671833..1672252	-	139	119357280	-	Cpha266_1473	-	hypothetical protein
1424	 54.23	+1	1672249..1673382	-	377	119357281	-	Cpha266_1474	-	hypothetical protein
1425	 38.35	-2	1673503..1673781	-	92	119357282	-	Cpha266_1475	-	hypothetical protein
1426	 59.74	+2	1673986..1674765	-	259	119357283	-	Cpha266_1476	-	hypothetical protein
1427	 53.25	+1	1674997..1675503	+	168	119357284	-	Cpha266_1477	-	hypothetical protein
1428	 44.37	0	1675786..1676220	+	144	119357285	-	Cpha266_1478	-	transposase
1429	 41.83	-1	1677027..1678238	+	403	119357286	-	Cpha266_1480	-	hypothetical protein
1430	 51.39	0	1678623..1679879	-	418	119357287	-	Cpha266_1481	-	RNA-directed DNA polymerase (Reverse transcriptase)
1431	 49.90	0	1680674..1682248	+	524	119357288	-	Cpha266_1482	-	integrase catalytic subunit
1432	 49.67	0	1682263..1683009	+	248	119357289	-	Cpha266_1483	-	IstB ATP binding domain-containing protein
1433	 58.11	+2	1683110..1683997	-	295	119357290	-	Cpha266_1484	-	hypothetical protein
1434	 52.14	0	1684063..1684833	-	256	119357291	-	Cpha266_1485	-	putative reverse transcriptase/maturase family protein
1435	 57.30	+1	1685483..1686454	-	323	119357292	-	Cpha266_1487	-	hypothetical protein
1436	 48.28	0	1687238..1688254	+	338	119357293	-	Cpha266_1489	-	regulatory protein, ArsR
1437	 42.31	-1	1688873..1691101	-	742	119357294	-	Cpha266_1490	-	hypothetical protein
1438	 53.56	+1	1691163..1692650	-	495	119357295	-	Cpha266_1491	-	N-6 DNA methylase
1439	 41.60	-1	1692656..1694095	-	479	119357296	-	Cpha266_1492	-	restriction modification system DNA specificity subunit
1440	 53.14	+1	1694118..1694849	-	243	119357297	-	Cpha266_1493	-	phage Gp37Gp68 family protein
1441	 30.64	-2	1694849..1695961	-	370	119357298	-	Cpha266_1494	-	hypothetical protein
1442	 54.29	+1	1695958..1698753	-	931	119357299	-	Cpha266_1495	-	type III restriction enzyme, res subunit
1443	 30.81	-2	1699062..1699616	-	184	119357300	-	Cpha266_1496	-	hypothetical protein
1444	 55.72	+1	1701458..1702252	-	264	119357301	-	Cpha266_1499	-	hypothetical protein
1445	 56.28	+1	1702276..1702458	-	60	119357302	-	Cpha266_1500	-	hypothetical protein
1446	 53.35	+1	1702470..1704038	-	522	119357303	-	Cpha266_1501	-	hypothetical protein
1447	 52.77	0	1704041..1704889	-	282	119357304	-	Cpha266_1502	-	Type II site-specific deoxyribonuclease
1448	 49.56	0	1705018..1705356	-	112	119357305	-	Cpha266_1503	-	hypothetical protein
1449	 49.51	0	1705417..1705923	-	168	119357306	-	Cpha266_1504	-	PilT domain-containing protein
1450	 50.09	0	1705920..1707071	-	383	119357307	-	Cpha266_1505	-	hypothetical protein
1451	 53.65	+1	1707504..1709024	-	506	119357308	-	Cpha266_1506	-	hypothetical protein
1452	 56.51	+1	1709292..1710473	-	393	119357309	-	Cpha266_1507	-	RND family efflux transporter MFP subunit
1453	 52.75	0	1710475..1712838	-	787	119357310	-	Cpha266_1508	-	hypothetical protein
1454	 52.48	0	1712846..1713592	-	248	119357311	-	Cpha266_1509	-	ABC transporter related
1455	 53.49	+1	1713892..1715379	-	495	119357312	-	Cpha266_1510	-	amino acid permease-associated region
1456	 53.24	+1	1715532..1719188	-	1218	119357313	-	Cpha266_1511	-	FAD linked oxidase domain-containing protein
1457	 53.37	+1	1719617..1720774	-	385	119357314	-	Cpha266_1512	-	DegT/DnrJ/EryC1/StrS aminotransferase
1458	 50.49	0	1720791..1721921	-	376	119357315	-	Cpha266_1513	-	iron-containing alcohol dehydrogenase
1459	 47.72	0	1721945..1722646	-	233	119357316	-	Cpha266_1514	-	acylneuraminate cytidylyltransferase
1460	 46.71	0	1722677..1723633	-	318	119357317	-	Cpha266_1515	-	hypothetical protein
1461	 49.15	0	1723636..1724697	-	353	119357318	-	Cpha266_1516	-	hypothetical protein
1462	 40.76	-1	1724920..1725660	-	246	119357319	-	Cpha266_1517	-	hypothetical protein
1463	 44.44	0	1725647..1726501	-	284	119357320	-	Cpha266_1518	-	DNA methylase N-4/N-6 domain-containing protein
1464	 46.43	0	1727075..1728907	+	610	119357321	-	Cpha266_1519	-	AMP-dependent synthetase and ligase
1465	 50.72	0	1729391..1730287	-	298	119357322	-	Cpha266_1520	-	HhH-GPD family protein
1466	 45.45	0	1730469..1730831	-	120	119357323	rplS	Cpha266_1521	-	50S ribosomal protein L19
1467	 49.43	0	1730861..1731562	-	233	119357324	trmD	Cpha266_1522	-	tRNA (guanine-N(1)-)-methyltransferase
1468	 46.23	0	1731604..1732107	-	167	119357325	-	Cpha266_1523	-	16S rRNA processing protein RimM
1469	 48.28	0	1732129..1732536	-	135	119357326	rpsP	Cpha266_1524	-	30S ribosomal protein S16
1470	 47.78	0	1732576..1733925	-	449	119357327	-	Cpha266_1525	-	signal recognition particle subunit FFH/SRP54 (srp54)
1471	 46.95	0	1734105..1735088	+	327	119357328	-	Cpha266_1526	-	rfaE bifunctional protein
1472	 44.91	0	1735060..1735698	-	212	119357329	-	Cpha266_1527	-	hypothetical protein
1473	 44.75	0	1735748..1736404	-	218	119357330	-	Cpha266_1528	-	cyclase/dehydrase
1474	 47.16	0	1736450..1738105	-	551	119357331	-	Cpha266_1529	-	C-terminal processing peptidase-3
1475	 47.20	0	1738963..1739445	-	160	119357332	-	Cpha266_1530	-	endoribonuclease L-PSP
1476	 48.04	0	1739791..1740429	+	212	119357333	-	Cpha266_1531	-	thiamine monophosphate synthase
1477	 49.11	0	1740426..1741046	+	206	119357334	-	Cpha266_1532	-	thiamine-phosphate pyrophosphorylase
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.