IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1308	 51.48	0	1547991..1551665	-	1224	119357165	-	Cpha266_1354	-	SMC domain-containing protein
1309	 47.84	0	1551973..1552296	+	107	119357166	-	Cpha266_1355	-	hypothetical protein
1310	 46.70	0	1553070..1554191	-	373	119357167	-	Cpha266_1356	-	glycosyl transferase, group 1
1311	 42.86	-1	1554210..1554650	-	146	119357168	-	Cpha266_1357	-	ECF subfamily RNA polymerase sigma-24 factor
1312	 46.05	0	1554823..1555113	-	96	119357169	-	Cpha266_1358	-	hypothetical protein
1313	 43.53	-1	1555284..1555832	-	182	119357170	-	Cpha266_1359	-	hypothetical protein
1314	 40.82	-1	1556001..1556147	-	48	119357171	-	Cpha266_1360	-	hypothetical protein
1315	 46.34	0	1557690..1557935	-	81	119357172	-	Cpha266_1361	-	hypothetical protein
1316	 47.14	0	1557982..1559871	+	629	119357173	-	Cpha266_1362	-	hypothetical protein
1317	 45.12	0	1561253..1561549	-	98	119357174	-	Cpha266_1364	-	hypothetical protein
1318	 45.76	0	1561623..1562153	+	176	119357175	-	Cpha266_1365	-	hypothetical protein
1319	 44.38	0	1562171..1562677	+	168	119357176	-	Cpha266_1366	-	transposase family protein
1320	 55.38	+1	1563565..1564539	+	324	119357177	-	Cpha266_1368	-	CaCA family Na(+)/Ca(+) antiporter
1321	 44.01	-1	1564779..1565312	+	177	119357178	-	Cpha266_1369	-	hypothetical protein
1322	 41.35	-1	1565700..1566011	+	103	119357179	-	Cpha266_1370	-	hypothetical protein
1323	 54.28	+1	1566453..1567703	-	416	119357180	-	Cpha266_1371	-	exodeoxyribonuclease I subunit D
1324	 44.49	0	1567765..1568571	-	268	119357181	-	Cpha266_1372	-	Ion transport 2 domain-containing protein
1325	 33.75	-2	1569108..1570316	-	402	119357182	-	Cpha266_1373	-	hypothetical protein
1326	 44.60	0	1571301..1572392	-	363	119357183	-	Cpha266_1374	-	hypothetical protein
1327	 54.26	+1	1573139..1573549	+	136	119357184	-	Cpha266_1375	-	XRE family transcriptional regulator
1328	 52.11	0	1573727..1573987	-	86	119357185	-	Cpha266_1376	-	addiction module antitoxin
1329	 53.33	+1	1573971..1574195	-	74	119357186	-	Cpha266_1377	-	CopG family transcriptional regulator
1330	 46.48	0	1574414..1574626	+	70	119357187	-	Cpha266_1378	-	hypothetical protein
1331	 48.15	0	1574662..1574904	+	80	119357188	-	Cpha266_1379	-	CopG family transcriptional regulator
1332	 50.14	0	1574889..1575233	+	114	119357189	-	Cpha266_1380	-	transcriptional modulator of MazE/toxin, MazF
1333	 52.78	0	1575439..1575690	+	83	119357190	-	Cpha266_1381	-	CopG family transcriptional regulator
1334	 53.22	+1	1575754..1576095	+	113	119357191	-	Cpha266_1382	-	hypothetical protein
1335	 45.76	0	1576336..1576866	+	176	119357192	-	Cpha266_1383	-	hypothetical protein
1336	 44.38	0	1576884..1577390	+	168	119357193	-	Cpha266_1384	-	transposase family protein
1337	 37.65	-2	1577699..1577860	+	53	119357194	-	Cpha266_1385	-	hypothetical protein
1338	 46.15	0	1577943..1578137	+	64	119357195	-	Cpha266_1386	-	hypothetical protein
1339	 44.44	0	1578141..1578383	+	80	119357196	-	Cpha266_1387	-	hypothetical protein
1340	 53.33	+1	1578441..1578770	+	109	119357197	-	Cpha266_1388	-	hypothetical protein
1341	 53.67	+1	1578767..1579066	+	99	119357198	-	Cpha266_1389	-	plasmid stabilization system protein
1342	 48.51	0	1579205..1579540	-	111	119357199	-	Cpha266_1390	-	transcriptional modulator of MazE/toxin, MazF
1343	 53.52	+1	1579537..1579749	-	70	119357200	-	Cpha266_1391	-	hypothetical protein
1344	 54.52	+1	1580069..1581031	-	320	119357201	-	Cpha266_1392	-	hypothetical protein
1345	 28.02	-2	1581423..1583399	-	658	119357202	-	Cpha266_1393	-	hypothetical protein
1346	 27.84	-2	1583420..1584529	-	369	119357203	-	Cpha266_1394	-	metallophosphoesterase
1347	 34.67	-2	1584945..1585694	-	249	119357204	-	Cpha266_1395	-	hypothetical protein
1348	 31.27	-2	1585705..1586334	-	209	119357205	-	Cpha266_1396	-	hypothetical protein
1349	 52.81	0	1586392..1586925	-	177	119357206	-	Cpha266_1397	-	hypothetical protein
1350	 49.16	0	1587158..1588831	-	557	119357207	-	Cpha266_1398	-	restriction modification system DNA specificity subunit
1351	 53.87	+1	1588824..1590308	-	494	119357208	-	Cpha266_1399	-	putative transcriptional regulator
1352	 63.40	+2	1590428..1592173	-	581	119357209	-	Cpha266_1400	-	DNA helicase/exodeoxyribonuclease V, alpha subunit
1353	 63.37	+2	1592170..1595835	-	1221	119357210	-	Cpha266_1401	-	DNA helicase/exodeoxyribonuclease V, beta subunit
1354	 62.40	+2	1595832..1599065	-	1077	119357211	-	Cpha266_1402	-	DNA helicase/exodeoxyribonuclease V, gamma subunit
1355	 49.20	0	1599144..1599641	-	165	119357212	-	Cpha266_1403	-	hypothetical protein
1356	 48.13	0	1599869..1601179	-	436	119357213	-	Cpha266_1404	-	hypothetical protein
1357	 40.74	-1	1601449..1601691	+	80	119357214	-	Cpha266_1405	-	hypothetical protein
1358	 47.99	0	1601886..1602233	-	115	119357215	-	Cpha266_1406	-	hypothetical protein
1359	 50.00	0	1602635..1602946	+	103	119357216	-	Cpha266_1407	-	XRE family plasmid maintenance system antidote protein
1360	 50.56	0	1603164..1605584	-	806	119357217	hppA	Cpha266_1408	-	membrane-bound proton-translocating pyrophosphatase
1361	 47.29	0	1605868..1606440	+	190	119357218	-	Cpha266_1409	-	peptidyl-tRNA hydrolase
1362	 43.93	-1	1606437..1607276	-	279	119357219	-	Cpha266_1410	-	alpha/beta hydrolase fold
1363	 51.57	0	1607342..1607884	-	180	119357220	-	Cpha266_1411	-	tRNA/rRNA methyltransferase (SpoU)
1364	 49.03	0	1607871..1608953	-	360	119357221	-	Cpha266_1412	-	histidinol phosphate aminotransferase
1365	 46.34	0	1609139..1609561	+	140	119357222	-	Cpha266_1413	-	ECF subfamily RNA polymerase sigma-24 factor
1366	 49.20	0	1609686..1610687	+	333	119357223	-	Cpha266_1414	-	ADP-glyceromanno-heptose 6-epimerase precursor
1367	 49.58	0	1610699..1611658	+	319	119357224	-	Cpha266_1415	-	PhoH family protein
1368	 52.91	0	1611793..1611981	+	62	119357225	-	Cpha266_1416	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1369	 54.50	+1	1612909..1613097	+	62	119357226	-	Cpha266_1418	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1370	 51.82	0	1613191..1613493	-	100	119357227	-	Cpha266_1419	-	stress responsive alpha-beta barrel domain-containing protein
1371	 45.78	0	1613643..1614518	-	291	119357228	-	Cpha266_1420	-	Serine-type D-Ala-D-Ala carboxypeptidase
1372	 50.00	0	1614836..1615459	-	207	119357229	-	Cpha266_1421	-	lysine exporter protein LysE/YggA
1373	 42.39	-1	1615474..1615782	-	102	119357230	-	Cpha266_1422	-	hypothetical protein
1374	 45.73	0	1615991..1616458	-	155	119357231	-	Cpha266_1423	-	hypothetical protein
1375	 56.79	+1	1616730..1617488	+	252	119357232	-	Cpha266_1424	-	nitroreductase
1376	 52.17	0	1619047..1620012	-	321	119357233	-	Cpha266_1425	-	hypothetical protein
1377	 45.45	0	1620313..1620642	+	109	119357234	-	Cpha266_1426	-	hypothetical protein
1378	 52.07	0	1620982..1621947	-	321	119357235	-	Cpha266_1427	-	hypothetical protein
1379	 49.67	0	1622859..1623605	-	248	119357236	-	Cpha266_1428	-	IstB ATP binding domain-containing protein
1380	 50.03	0	1623620..1625194	-	524	119357237	-	Cpha266_1429	-	integrase catalytic subunit
1381	 48.11	0	1633227..1633517	-	96	119357238	-	Cpha266_1430	-	CRISPR-associated Cas2 family protein
1382	 50.39	0	1633521..1634552	-	343	119357239	-	Cpha266_1431	-	CRISPR-associated Cas1 family protein
1383	 53.02	0	1634549..1635193	-	214	119357240	-	Cpha266_1432	-	CRISPR-associated Cas4 family protein
1384	 45.41	0	1635196..1636296	-	366	119357241	-	Cpha266_1433	-	CRISPR-associated Csd2 family protein
1385	 43.13	-1	1636337..1638061	-	574	119357242	-	Cpha266_1434	-	CRISPR-associated RAMP Csd1 family protein
1386	 54.34	+1	1638058..1638771	-	237	119357243	-	Cpha266_1435	-	CRISPR-associated Cas5 family protein
1387	 53.24	+1	1638794..1640797	-	667	119357244	-	Cpha266_1436	-	CRISPR-associated helicase Cas3
1388	 49.60	0	1640784..1641035	-	83	119357245	-	Cpha266_1437	-	hypothetical protein
1389	 48.03	0	1641028..1642041	-	337	119357246	-	Cpha266_1438	-	hypothetical protein
1390	 53.88	+1	1642528..1642965	-	145	119357247	-	Cpha266_1439	-	hypothetical protein
1391	 48.95	0	1643339..1643575	+	78	119357248	-	Cpha266_1440	-	hypothetical protein
1392	 50.23	0	1643572..1643784	+	70	119357249	-	Cpha266_1441	-	YcfA family protein
1393	 39.91	-1	1643958..1644170	-	70	119357250	-	Cpha266_1442	-	hypothetical protein
1394	 56.29	+1	1644568..1645743	-	391	119357251	-	Cpha266_1443	-	hypothetical protein
1395	 55.41	+1	1645740..1649105	-	1121	119357252	-	Cpha266_1444	-	hypothetical protein
1396	 52.83	0	1649098..1649733	-	211	119357253	-	Cpha266_1445	-	hypothetical protein
1397	 55.21	+1	1649730..1651178	-	482	119357254	-	Cpha266_1446	-	hypothetical protein
1398	 45.41	0	1651241..1651687	-	148	119357255	-	Cpha266_1447	-	hypothetical protein
1399	 41.88	-1	1651774..1652241	-	155	119357256	-	Cpha266_1448	-	hypothetical protein
1400	 50.50	0	1652734..1653735	+	333	119357257	-	Cpha266_1449	-	bacteriochlorophyll/chlorophyll a synthase
1401	 46.91	0	1653735..1654139	+	134	119357258	-	Cpha266_1450	-	cell wall biosynthesis glycosyltransferase-like protein
1402	 51.25	0	1654121..1654957	-	278	119357259	-	Cpha266_1451	-	IstB ATP binding domain-containing protein
1403	 50.89	0	1654963..1656534	-	523	119357260	-	Cpha266_1452	-	integrase catalytic subunit
1404	 48.37	0	1656665..1656970	+	101	119357261	-	Cpha266_1453	-	glycosyl transferase
1405	 49.18	0	1656978..1657526	+	182	119357262	-	Cpha266_1454	-	hypothetical protein
1406	 48.20	0	1657634..1658050	+	138	119357263	-	Cpha266_1455	-	hypothetical protein
1407	 49.13	0	1658115..1658918	+	267	119357264	-	Cpha266_1456	-	zinc transporter ZupT
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.