IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1175	 51.94	0	1383043..1384278	-	411	119357032	-	Cpha266_1218	-	transposase, mutator type
1176	 38.66	-2	1384575..1385081	-	168	119357033	-	Cpha266_1219	-	hypothetical protein
1177	 33.58	-2	1385387..1385794	-	135	119357034	-	Cpha266_1220	-	hypothetical protein
1178	 33.71	-2	1385872..1386402	-	176	119357035	-	Cpha266_1221	-	hypothetical protein
1179	 55.82	+1	1386603..1392455	-	1950	119357036	-	Cpha266_1222	-	superfamily I DNA/RNA helicase
1180	 47.57	0	1392561..1392827	-	88	119357037	-	Cpha266_1223	-	hypothetical protein
1181	 53.15	+1	1393311..1394168	-	285	119357038	-	Cpha266_1224	-	hypothetical protein
1182	 56.07	+1	1394165..1394815	-	216	119357039	-	Cpha266_1225	-	hypothetical protein
1183	 53.67	+1	1394946..1395245	-	99	119357040	-	Cpha266_1226	-	plasmid stabilization system protein
1184	 54.81	+1	1395242..1395511	-	89	119357041	-	Cpha266_1227	-	hypothetical protein
1185	 45.80	0	1395517..1395861	+	114	119357042	-	Cpha266_1228	-	hypothetical protein
1186	 55.81	+1	1395961..1397028	-	355	119357043	-	Cpha266_1229	-	succinylglutamate desuccinylase/aspartoacylase
1187	 54.46	+1	1397016..1398449	-	477	119357044	-	Cpha266_1230	-	hypothetical protein
1188	 48.57	0	1398995..1399867	-	290	119357045	-	Cpha266_1232	-	putative PAS/PAC sensor protein
1189	 43.39	-1	1399893..1400270	+	125	119357046	-	Cpha266_1233	-	hypothetical protein
1190	 47.31	0	1400326..1400511	+	61	119357047	-	Cpha266_1234	-	hypothetical protein
1191	 51.59	0	1400533..1403556	+	1007	119357048	-	Cpha266_1235	-	SNF2-related protein
1192	 49.59	0	1403561..1404532	+	323	119357049	-	Cpha266_1236	-	zinc finger SWIM domain-containing protein
1193	 49.42	0	1405057..1405746	-	229	119357050	-	Cpha266_1237	-	HAD family hydrolase
1194	 48.48	0	1405785..1406444	-	219	119357051	-	Cpha266_1238	-	methyltransferase type 11
1195	 40.82	-1	1406546..1406812	+	88	119357052	-	Cpha266_1239	-	hypothetical protein
1196	 47.19	0	1407115..1407720	+	201	119357053	-	Cpha266_1240	-	TetR family transcriptional regulator
1197	 53.88	+1	1407723..1408919	+	398	119357054	-	Cpha266_1241	-	RND family efflux transporter MFP subunit
1198	 52.70	0	1408916..1410118	+	400	119357055	-	Cpha266_1242	-	hypothetical protein
1199	 52.79	0	1410120..1410854	+	244	119357056	-	Cpha266_1243	-	ABC transporter related
1200	 53.03	0	1410851..1412287	+	478	119357057	-	Cpha266_1244	-	RND efflux system outer membrane lipoprotein
1201	 49.49	0	1412265..1412654	-	129	119357058	-	Cpha266_1245	-	hypothetical protein
1202	 46.81	0	1413557..1415419	+	620	119357059	-	Cpha266_1246	-	Cl- channel, voltage-gated family protein
1203	 42.58	-1	1415645..1416628	+	327	119357060	-	Cpha266_1247	-	putative PAS/PAC sensor protein
1204	 44.53	0	1417025..1418248	+	407	119357061	-	Cpha266_1248	-	arsenite-activated ATPase ArsA
1205	 41.67	-1	1418472..1418927	-	151	119357062	-	Cpha266_1249	-	hypothetical protein
1206	 49.66	0	1419106..1419699	-	197	119357063	-	Cpha266_1250	-	hypothetical protein
1207	 44.55	0	1420345..1421601	-	418	119357064	-	Cpha266_1251	-	DEAD/DEAH box helicase domain-containing protein
1208	 42.21	-1	1422346..1423257	+	303	119357065	-	Cpha266_1252	-	putative PAS/PAC sensor protein
1209	 44.91	0	1423437..1425458	+	673	119357066	-	Cpha266_1253	-	multi-sensor signal transduction histidine kinase
1210	 46.99	0	1425769..1426581	-	270	119357067	-	Cpha266_1254	-	peptidase C14, caspase catalytic subunit p20
1211	 48.70	0	1426865..1428484	+	539	119357068	-	Cpha266_1255	-	UDP-N-acetylmuramate dehydrogenase
1212	 50.00	0	1428563..1429390	-	275	119357069	-	Cpha266_1256	-	oxidoreductase FAD/NAD(P)-binding subunit
1213	 48.22	0	1429426..1430439	-	337	119357070	-	Cpha266_1257	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1214	 47.77	0	1430450..1431280	-	276	119357071	-	Cpha266_1258	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1215	 51.11	0	1431290..1431739	-	149	119357072	-	Cpha266_1259	-	methyl-viologen-reducing hydrogenase, delta subunit
1216	 49.67	0	1431802..1433772	-	656	119357073	-	Cpha266_1260	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1217	 49.30	0	1434061..1435569	-	502	119357074	-	Cpha266_1261	-	CoB--CoM heterodisulfide reductase
1218	 47.20	0	1435785..1436231	+	148	119357075	-	Cpha266_1262	-	large conductance mechanosensitive channel protein
1219	 47.26	0	1436576..1437853	+	425	119357076	-	Cpha266_1263	-	aspartate aminotransferase
1220	 51.39	0	1437957..1439540	-	527	119357077	-	Cpha266_1264	-	carbohydrate kinase, YjeF related protein
1221	 49.36	0	1439565..1441847	-	760	119357078	-	Cpha266_1265	-	phosphoribosylformylglycinamidine synthase II
1222	 48.26	0	1441873..1444941	-	1022	119357079	secA	Cpha266_1266	-	preprotein translocase subunit SecA
1223	 42.25	-1	1445675..1446538	-	287	119357080	-	Cpha266_1267	-	HhH-GPD family protein
1224	 44.86	0	1447350..1447592	+	80	119357081	-	Cpha266_1268	-	hypothetical protein
1225	 45.48	0	1447940..1448359	+	139	119357082	-	Cpha266_1269	-	cytochrome c, class I
1226	 44.84	0	1448482..1449315	+	277	119357083	-	Cpha266_1270	-	hypothetical protein
1227	 46.51	0	1449477..1450637	-	386	119357084	-	Cpha266_1271	-	malate dehydrogenase
1228	 48.02	0	1450990..1451745	+	251	119357085	-	Cpha266_1272	-	hypothetical protein
1229	 45.79	0	1452109..1452381	+	90	119357086	-	Cpha266_1273	-	RNP-1 like RNA-binding protein
1230	 34.89	-2	1452628..1454106	-	492	119357087	-	Cpha266_1274	-	hypothetical protein
1231	 49.09	0	1454245..1454961	-	238	119357088	-	Cpha266_1275	-	NAD-dependent epimerase/dehydratase
1232	 45.25	0	1454970..1455548	-	192	119357089	-	Cpha266_1276	-	hypothetical protein
1233	 49.54	0	1455568..1456431	-	287	119357090	-	Cpha266_1277	-	lipoyl synthase
1234	 43.73	-1	1456926..1458704	+	592	119357091	-	Cpha266_1278	-	hypothetical protein
1235	 42.17	-1	1458682..1459281	+	199	119357092	-	Cpha266_1279	-	hypothetical protein
1236	 51.25	0	1459396..1460232	-	278	119357093	-	Cpha266_1280	-	IstB ATP binding domain-containing protein
1237	 50.83	0	1460238..1461809	-	523	119357094	-	Cpha266_1281	-	integrase catalytic subunit
1238	 49.48	0	1462198..1462488	-	96	119357095	-	Cpha266_1282	-	putative DNA-binding protein
1239	 45.03	0	1462721..1463062	+	113	119357096	-	Cpha266_1283	-	hypothetical protein
1240	 46.32	0	1463177..1463407	+	76	119357097	-	Cpha266_1284	-	hypothetical protein
1241	 44.33	0	1463427..1463726	+	99	119357098	-	Cpha266_1285	-	hypothetical protein
1242	 53.25	+1	1463732..1463977	-	81	119357099	-	Cpha266_1286	-	hypothetical protein
1243	 53.95	+1	1464137..1464844	+	235	119357100	-	Cpha266_1287	-	hypothetical protein
1244	 47.08	0	1464968..1465207	+	79	119357101	-	Cpha266_1288	-	hypothetical protein
1245	 44.53	0	1465312..1465704	+	130	119357102	-	Cpha266_1289	-	hypothetical protein
1246	 43.21	-1	1465676..1465918	-	80	119357103	-	Cpha266_1290	-	hypothetical protein
1247	 41.46	-1	1465968..1466336	-	122	119357104	-	Cpha266_1291	-	hypothetical protein
1248	 45.57	0	1466333..1467484	-	383	119357105	-	Cpha266_1292	-	hypothetical protein
1249	 46.94	0	1469238..1469597	+	119	119357106	-	Cpha266_1294	-	hypothetical protein
1250	 48.63	0	1470090..1471370	+	426	119357107	-	Cpha266_1295	-	hypothetical protein
1251	 49.22	0	1471367..1473166	+	599	119357108	-	Cpha266_1296	-	hypothetical protein
1252	 48.20	0	1473153..1473374	+	73	119357109	-	Cpha266_1297	-	hypothetical protein
1253	 29.53	-2	1473567..1475960	-	797	119357110	-	Cpha266_1298	-	ankyrin
1254	 42.29	-1	1476041..1480519	-	1492	119357111	-	Cpha266_1299	-	hypothetical protein
1255	 50.25	0	1480653..1484501	-	1282	119357112	-	Cpha266_1300	-	hypothetical protein
1256	 54.12	+1	1484498..1487374	-	958	119357113	-	Cpha266_1301	-	helicase domain-containing protein
1257	 50.43	0	1487371..1492530	-	1719	119357114	-	Cpha266_1302	-	DEAD/DEAH box helicase domain-containing protein
1258	 46.26	0	1493570..1495612	-	680	119357115	-	Cpha266_1304	-	C-terminal processing peptidase-1
1259	 51.00	0	1496053..1496652	-	199	119357116	-	Cpha266_1305	-	hypothetical protein
1260	 50.63	0	1497091..1498923	-	610	119357117	-	Cpha266_1306	-	ATP citrate lyase subunit 2
1261	 50.38	0	1498985..1500181	-	398	119357118	-	Cpha266_1307	-	ATP citrate lyase subunit 1
1262	 47.73	0	1500331..1501233	+	300	119357119	-	Cpha266_1308	-	prolipoprotein diacylglyceryl transferase
1263	 50.26	0	1501162..1501941	-	259	119357120	-	Cpha266_1309	-	hypothetical protein
1264	 51.12	0	1501941..1502609	-	222	119357121	-	Cpha266_1310	-	ABC transporter related
1265	 53.11	0	1502704..1505247	+	847	119357122	-	Cpha266_1311	-	hypothetical protein
1266	 50.08	0	1505273..1505923	-	216	119357123	-	Cpha266_1312	-	hypothetical protein
1267	 47.50	0	1506053..1506532	-	159	119357124	-	Cpha266_1313	-	Lipocalin family protein
1268	 50.56	0	1506730..1507176	+	148	119357125	-	Cpha266_1314	-	GCN5-related N-acetyltransferase
1269	 50.85	0	1507193..1507369	+	58	119357126	-	Cpha266_1315	-	rubredoxin-type Fe(Cys)4 protein
1270	 50.12	0	1507411..1508661	-	416	119357127	-	Cpha266_1316	-	hypothetical protein
1271	 47.96	0	1508684..1509955	-	423	119357128	-	Cpha266_1317	-	hypothetical protein
1272	 47.61	0	1509952..1511226	-	424	119357129	-	Cpha266_1318	-	diguanylate cyclase
1273	 52.28	0	1511231..1512196	-	321	119357130	-	Cpha266_1319	-	phosphate-binding protein, putative
1274	 51.69	0	1512491..1513525	+	344	119357131	argC	Cpha266_1320	-	N-acetyl-gamma-glutamyl-phosphate reductase
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.