IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1085	 54.05	+1	1268603..1269886	+	427	119356942	-	Cpha266_1122	-	ABC transporter related
1086	 47.78	0	1269901..1270710	+	269	119356943	-	Cpha266_1123	-	xylose isomerase domain-containing protein
1087	 50.00	0	1271739..1272014	+	91	119356944	-	Cpha266_1124	-	hypothetical protein
1088	 53.99	+1	1272059..1272547	+	162	119356945	-	Cpha266_1125	-	hypothetical protein
1089	 50.29	0	1272900..1274975	+	691	119356946	-	Cpha266_1126	-	ATP-dependent DNA helicase RecQ
1090	 50.45	0	1274978..1276297	+	439	119356947	-	Cpha266_1127	-	hypothetical protein
1091	 50.48	0	1276385..1279183	+	932	119356948	-	Cpha266_1128	-	type III restriction enzyme, res subunit
1092	 48.81	0	1279185..1280612	+	475	119356949	-	Cpha266_1129	-	putative transcriptional regulator
1093	 51.74	0	1280656..1282317	+	553	119356950	-	Cpha266_1130	-	N-6 DNA methylase
1094	 42.59	-1	1282314..1283555	+	413	119356951	-	Cpha266_1131	-	restriction modification system DNA specificity subunit
1095	 48.62	0	1283753..1284727	+	324	119356952	-	Cpha266_1132	-	hypothetical protein
1096	 44.25	0	1284724..1285905	+	393	119356953	-	Cpha266_1133	-	hypothetical protein
1097	 42.58	-1	1285959..1286315	+	118	119356954	-	Cpha266_1134	-	hypothetical protein
1098	 50.89	0	1286645..1288216	+	523	119356955	-	Cpha266_1136	-	integrase catalytic subunit
1099	 51.25	0	1288222..1289058	+	278	119356956	-	Cpha266_1137	-	IstB ATP binding domain-containing protein
1100	 44.01	-1	1290851..1291159	+	102	119356957	-	Cpha266_1139	-	hypothetical protein
1101	 37.75	-2	1291760..1292008	+	82	119356958	-	Cpha266_1141	-	hypothetical protein
1102	 42.96	-1	1292023..1292292	+	89	119356959	-	Cpha266_1142	-	hypothetical protein
1103	 46.17	0	1292412..1292855	+	147	119356960	-	Cpha266_1143	-	hypothetical protein
1104	 52.49	0	1293161..1293802	+	213	119356961	-	Cpha266_1144	-	HAD family hydrolase
1105	 60.74	+2	1293999..1294133	+	44	119356962	-	Cpha266_1145	-	exodeoxyribonuclease V, RecC subunit
1106	 46.84	0	1294393..1294629	-	78	119356963	-	Cpha266_1146	-	hypothetical protein
1107	 45.42	0	1294689..1294928	-	79	119356964	-	Cpha266_1147	-	hypothetical protein
1108	 47.66	0	1295030..1295371	+	113	119356965	-	Cpha266_1148	-	hypothetical protein
1109	 46.76	0	1295544..1296362	-	272	119356966	-	Cpha266_1149	-	hypothetical protein
1110	 48.85	0	1296359..1297138	-	259	119356967	-	Cpha266_1150	-	hypothetical protein
1111	 49.19	0	1297308..1297799	+	163	119356968	-	Cpha266_1151	-	putative transcriptional regulator
1112	 47.46	0	1298041..1298925	+	294	119356969	-	Cpha266_1152	-	prophage antirepressor
1113	 48.62	0	1299002..1300048	+	348	119356970	-	Cpha266_1153	-	transposase and inactivated derivatives
1114	 55.01	+1	1300241..1301776	+	511	119356971	-	Cpha266_1154	-	hypothetical protein
1115	 55.92	+1	1301794..1303626	+	610	119356972	-	Cpha266_1155	-	hypothetical protein
1116	 61.80	+2	1304074..1304916	+	280	119356973	-	Cpha266_1156	-	short-chain dehydrogenase/reductase SDR
1117	 47.34	0	1305135..1305698	+	187	119356974	-	Cpha266_1157	-	methyltransferase type 11
1118	 47.89	0	1305699..1305911	+	70	119356975	-	Cpha266_1158	-	hypothetical protein
1119	 53.54	+1	1306173..1306865	-	230	119356976	-	Cpha266_1159	-	peptidase, membrane zinc metallopeptidase, putative
1120	 52.09	0	1307084..1308421	+	445	119356977	-	Cpha266_1160	-	nodulation efficiency protein NfeD
1121	 49.00	0	1308424..1309170	+	248	119356978	-	Cpha266_1161	-	SPFH domain-containing protein/band 7 family protein
1122	 45.45	0	1309213..1309674	+	153	119356979	-	Cpha266_1162	-	UspA domain-containing protein
1123	 47.97	0	1309713..1310744	-	343	119356980	-	Cpha266_1163	-	arginine/ornithine transport system ATPase
1124	 51.77	0	1310741..1312882	-	713	119356981	-	Cpha266_1164	-	methylmalonyl-CoA mutase
1125	 50.62	0	1312879..1314648	-	589	119356982	-	Cpha266_1165	-	methylmalonyl-CoA mutase
1126	 46.61	0	1314635..1316464	-	609	119356983	-	Cpha266_1166	-	acetyl-CoA carboxylase alpha subunit-like
1127	 44.85	0	1316496..1316903	-	135	119356984	-	Cpha266_1167	-	methylmalonyl-CoA epimerase
1128	 49.53	0	1316900..1318813	-	637	119356985	-	Cpha266_1168	-	AMP-dependent synthetase and ligase
1129	 45.31	0	1319232..1320041	-	269	119356986	ksgA	Cpha266_1169	-	dimethyladenosine transferase
1130	 49.54	0	1320113..1321093	+	326	119356987	-	Cpha266_1170	-	transketolase subunit B
1131	 47.92	0	1321159..1321494	+	111	119356988	-	Cpha266_1171	-	hypothetical protein
1132	 52.27	0	1321501..1322118	+	205	119356989	-	Cpha266_1172	-	recombination protein RecR
1133	 48.41	0	1322177..1323562	+	461	119356990	-	Cpha266_1173	-	zeta-carotene desaturase
1134	 42.27	-1	1324474..1325133	-	219	119356991	-	Cpha266_1174	-	hypothetical protein
1135	 47.56	0	1325591..1326637	-	348	119356992	-	Cpha266_1175	-	radical SAM domain-containing protein
1136	 41.53	-1	1326726..1327091	-	121	119356993	-	Cpha266_1176	-	hypothetical protein
1137	 47.88	0	1328224..1329825	-	533	119356994	-	Cpha266_1177	-	peptide chain release factor 3
1138	 42.11	-1	1330034..1330831	+	265	119356995	-	Cpha266_1178	-	amino acid ABC transporter periplasmic protein
1139	 38.12	-2	1330944..1331966	+	340	119356996	-	Cpha266_1179	-	polar amino acid ABC transporter, inner membrane subunit
1140	 39.24	-2	1331963..1333045	+	360	119356997	-	Cpha266_1180	-	ABC transporter related
1141	 46.25	0	1333347..1333880	+	177	119356998	-	Cpha266_1182	-	inorganic diphosphatase
1142	 48.50	0	1335815..1336315	-	166	119356999	-	Cpha266_1183	-	hypothetical protein
1143	 46.82	0	1336561..1337472	+	303	119357000	-	Cpha266_1184	-	hypothetical protein
1144	 52.48	0	1337532..1338920	+	462	119357001	-	Cpha266_1185	-	fumarate hydratase, class II
1145	 48.67	0	1339452..1339979	+	175	119357002	-	Cpha266_1186	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
1146	 49.54	0	1340051..1340920	+	289	119357003	-	Cpha266_1187	-	N-acetylneuraminate synthase
1147	 47.05	0	1341100..1342980	+	626	119357004	-	Cpha266_1188	-	heat shock protein 90
1148	 45.55	0	1343024..1343899	+	291	119357005	-	Cpha266_1189	-	hypothetical protein
1149	 47.33	0	1343928..1345484	-	518	119357006	-	Cpha266_1190	-	hypothetical protein
1150	 51.11	0	1345783..1347312	+	509	119357007	-	Cpha266_1191	-	fumarase
1151	 49.66	0	1347508..1349412	+	634	119357008	-	Cpha266_1192	-	biotin/lipoyl attachment domain-containing protein
1152	 43.56	-1	1349493..1350695	-	400	119357009	-	Cpha266_1193	-	internalin-related protein
1153	 44.08	-1	1350932..1353295	+	787	119357010	-	Cpha266_1194	-	Kojibiose phosphorylase
1154	 48.92	0	1353459..1357031	+	1190	119357011	-	Cpha266_1195	-	DNA polymerase III, alpha subunit
1155	 43.94	-1	1357272..1357601	+	109	119357012	-	Cpha266_1196	-	thioredoxin
1156	 48.50	0	1357782..1358717	+	311	119357013	-	Cpha266_1197	-	thioredoxin reductase
1157	 52.44	0	1358714..1359388	-	224	119357014	-	Cpha266_1198	-	tRNA guanosine-2'-O-methyltransferase
1158	 45.81	0	1359726..1360799	+	357	119357015	-	Cpha266_1199	-	hypothetical protein
1159	 52.46	0	1361057..1361422	+	121	119357016	-	Cpha266_1200	-	hypothetical protein
1160	 45.93	0	1361813..1362550	+	245	119357017	-	Cpha266_1201	-	hypothetical protein
1161	 48.18	0	1362998..1365739	+	913	119357018	-	Cpha266_1202	-	hypothetical protein
1162	 51.51	0	1365920..1371229	-	1769	119357019	-	Cpha266_1203	-	outer membrane autotransporter
1163	 49.33	0	1372996..1373664	-	222	119357020	-	Cpha266_1205	-	two component transcriptional regulator
1164	 49.34	0	1373707..1374087	-	126	119357021	-	Cpha266_1206	-	hypothetical protein
1165	 55.70	+1	1374745..1375674	+	309	119357022	-	Cpha266_1207	-	CaCA family Na(+)/Ca(+) antiporter
1166	 46.03	0	1375674..1375925	+	83	119357023	-	Cpha266_1208	-	hypothetical protein
1167	 45.68	0	1375935..1377044	-	369	119357024	-	Cpha266_1209	-	OmpA/MotB domain-containing protein
1168	 58.79	+2	1377578..1378351	-	257	119357025	-	Cpha266_1210	-	DNA topoisomerase type IA Zn finger domain-containing protein
1169	 49.00	0	1378845..1379195	+	116	119357026	-	Cpha266_1211	-	hypothetical protein
1170	 50.10	0	1379212..1379712	+	166	119357027	-	Cpha266_1212	-	GCN5-related N-acetyltransferase
1171	 58.89	+2	1379960..1381207	-	415	119357028	-	Cpha266_1213	-	AAA family ATPase
1172	 55.68	+1	1381910..1382173	-	87	119357029	-	Cpha266_1215	-	hypothetical protein
1173	 52.22	0	1382417..1382686	+	89	119357030	-	Cpha266_1216	-	hypothetical protein
1174	 52.58	0	1382674..1382964	+	96	119357031	-	Cpha266_1217	-	plasmid stabilization system protein
1175	 51.94	0	1383043..1384278	-	411	119357032	-	Cpha266_1218	-	transposase, mutator type
1176	 38.66	-2	1384575..1385081	-	168	119357033	-	Cpha266_1219	-	hypothetical protein
1177	 33.58	-2	1385387..1385794	-	135	119357034	-	Cpha266_1220	-	hypothetical protein
1178	 33.71	-2	1385872..1386402	-	176	119357035	-	Cpha266_1221	-	hypothetical protein
1179	 55.82	+1	1386603..1392455	-	1950	119357036	-	Cpha266_1222	-	superfamily I DNA/RNA helicase
1180	 47.57	0	1392561..1392827	-	88	119357037	-	Cpha266_1223	-	hypothetical protein
1181	 53.15	+1	1393311..1394168	-	285	119357038	-	Cpha266_1224	-	hypothetical protein
1182	 56.07	+1	1394165..1394815	-	216	119357039	-	Cpha266_1225	-	hypothetical protein
1183	 53.67	+1	1394946..1395245	-	99	119357040	-	Cpha266_1226	-	plasmid stabilization system protein
1184	 54.81	+1	1395242..1395511	-	89	119357041	-	Cpha266_1227	-	hypothetical protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.