IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1044	 38.68	-2	1221650..1222042	-	130	119356901	-	Cpha266_1080	-	anti-sigma-factor antagonist
1045	 45.52	0	1222197..1223156	-	319	119356902	-	Cpha266_1081	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1046	 46.90	0	1223167..1223763	-	198	119356903	-	Cpha266_1082	-	maf protein
1047	 48.39	0	1223760..1225526	-	588	119356904	-	Cpha266_1083	-	Na+/solute symporter
1048	 47.59	0	1225645..1226556	-	303	119356905	-	Cpha266_1084	-	ribokinase-like domain-containing protein
1049	 47.85	0	1226746..1228695	-	649	119356906	-	Cpha266_1085	-	alpha-amylase family protein
1050	 48.52	0	1228803..1229579	+	258	119356907	truA	Cpha266_1086	-	tRNA pseudouridine synthase A
1051	 46.90	0	1229626..1231578	+	650	119356908	-	Cpha266_1087	-	lytic transglycosylase, catalytic
1052	 44.61	0	1231774..1232961	+	395	119356909	-	Cpha266_1088	-	arsenite-activated ATPase ArsA
1053	 47.25	0	1233048..1234628	-	526	119356910	-	Cpha266_1089	-	D-3-phosphoglycerate dehydrogenase
1054	 47.23	0	1234985..1236049	+	354	119356911	-	Cpha266_1090	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1055	 46.57	0	1236080..1236283	+	67	119356912	-	Cpha266_1091	-	hypothetical protein
1056	 45.56	0	1236377..1237513	+	378	119356913	-	Cpha266_1092	-	hypothetical protein
1057	 47.15	0	1237613..1238314	-	233	119356914	-	Cpha266_1093	-	hypothetical protein
1058	 45.80	0	1238568..1239008	+	146	119356915	-	Cpha266_1094	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
1059	 48.15	0	1239049..1240728	+	559	119356916	-	Cpha266_1095	-	glucose-6-phosphate isomerase
1060	 42.99	-1	1240882..1242237	-	451	119356917	-	Cpha266_1096	-	hypothetical protein
1061	 43.28	-1	1242262..1243065	-	267	119356918	-	Cpha266_1097	-	hypothetical protein
1062	 43.57	-1	1243058..1244347	-	429	119356919	-	Cpha266_1098	-	hypothetical protein
1063	 42.19	-1	1244452..1245705	-	417	119356920	-	Cpha266_1099	-	3-oxoacyl-(ACP) synthase III
1064	 45.85	0	1245802..1246512	-	236	119356921	-	Cpha266_1100	-	ABC transporter related
1065	 49.40	0	1246618..1247370	-	250	119356922	-	Cpha266_1101	-	short-chain dehydrogenase/reductase SDR
1066	 47.19	0	1247367..1248131	-	254	119356923	-	Cpha266_1102	-	short-chain dehydrogenase/reductase SDR
1067	 48.46	0	1248131..1249366	-	411	119356924	-	Cpha266_1103	-	beta-ketoacyl synthase
1068	 40.59	-1	1249374..1249676	-	100	119356925	-	Cpha266_1104	-	hypothetical protein
1069	 46.99	0	1249692..1250423	-	243	119356926	-	Cpha266_1105	-	hypothetical protein
1070	 43.40	-1	1250420..1250866	-	148	119356927	-	Cpha266_1106	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ
1071	 47.15	0	1251081..1251449	-	122	119356928	-	Cpha266_1107	-	holo-acyl-carrier-protein synthase
1072	 49.89	0	1251617..1252921	-	434	119356929	-	Cpha266_1108	-	adenylosuccinate lyase
1073	 49.26	0	1253038..1254450	-	470	119356930	-	Cpha266_1109	-	metal dependent phosphohydrolase
1074	 48.02	0	1254461..1255522	-	353	119356931	-	Cpha266_1110	-	oxidoreductase domain-containing protein
1075	 47.27	0	1255528..1256862	-	444	119356932	-	Cpha266_1111	-	major facilitator transporter
1076	 48.64	0	1256908..1257789	-	293	119356933	-	Cpha266_1112	-	periplasmic binding protein
1077	 49.32	0	1258441..1260141	+	566	119356934	-	Cpha266_1114	-	Na+/Pi-cotransporter
1078	 47.79	0	1260809..1262758	+	649	119356935	-	Cpha266_1115	-	TonB-dependent receptor
1079	 56.74	+1	1262801..1263445	+	214	119356936	-	Cpha266_1116	-	cob(II)yrinic acid a,c-diamide reductase
1080	 52.31	0	1263439..1264956	+	505	119356937	-	Cpha266_1117	-	adenosylcobyric acid synthase (glutamine-hydrolysing)
1081	 51.32	0	1264953..1266053	+	366	119356938	-	Cpha266_1118	-	L-threonine O-3-phosphate decarboxylase
1082	 54.40	+1	1266050..1267003	+	317	119356939	-	Cpha266_1119	-	adenosylcobinamide-phosphate synthase
1083	 54.72	+1	1267003..1267563	+	186	119356940	-	Cpha266_1120	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1084	 54.07	+1	1267570..1268601	+	343	119356941	-	Cpha266_1121	-	transport system permease protein
1085	 54.05	+1	1268603..1269886	+	427	119356942	-	Cpha266_1122	-	ABC transporter related
1086	 47.78	0	1269901..1270710	+	269	119356943	-	Cpha266_1123	-	xylose isomerase domain-containing protein
1087	 50.00	0	1271739..1272014	+	91	119356944	-	Cpha266_1124	-	hypothetical protein
1088	 53.99	+1	1272059..1272547	+	162	119356945	-	Cpha266_1125	-	hypothetical protein
1089	 50.29	0	1272900..1274975	+	691	119356946	-	Cpha266_1126	-	ATP-dependent DNA helicase RecQ
1090	 50.45	0	1274978..1276297	+	439	119356947	-	Cpha266_1127	-	hypothetical protein
1091	 50.48	0	1276385..1279183	+	932	119356948	-	Cpha266_1128	-	type III restriction enzyme, res subunit
1092	 48.81	0	1279185..1280612	+	475	119356949	-	Cpha266_1129	-	putative transcriptional regulator
1093	 51.74	0	1280656..1282317	+	553	119356950	-	Cpha266_1130	-	N-6 DNA methylase
1094	 42.59	-1	1282314..1283555	+	413	119356951	-	Cpha266_1131	-	restriction modification system DNA specificity subunit
1095	 48.62	0	1283753..1284727	+	324	119356952	-	Cpha266_1132	-	hypothetical protein
1096	 44.25	0	1284724..1285905	+	393	119356953	-	Cpha266_1133	-	hypothetical protein
1097	 42.58	-1	1285959..1286315	+	118	119356954	-	Cpha266_1134	-	hypothetical protein
1098	 50.89	0	1286645..1288216	+	523	119356955	-	Cpha266_1136	-	integrase catalytic subunit
1099	 51.25	0	1288222..1289058	+	278	119356956	-	Cpha266_1137	-	IstB ATP binding domain-containing protein
1100	 44.01	-1	1290851..1291159	+	102	119356957	-	Cpha266_1139	-	hypothetical protein
1101	 37.75	-2	1291760..1292008	+	82	119356958	-	Cpha266_1141	-	hypothetical protein
1102	 42.96	-1	1292023..1292292	+	89	119356959	-	Cpha266_1142	-	hypothetical protein
1103	 46.17	0	1292412..1292855	+	147	119356960	-	Cpha266_1143	-	hypothetical protein
1104	 52.49	0	1293161..1293802	+	213	119356961	-	Cpha266_1144	-	HAD family hydrolase
1105	 60.74	+2	1293999..1294133	+	44	119356962	-	Cpha266_1145	-	exodeoxyribonuclease V, RecC subunit
1106	 46.84	0	1294393..1294629	-	78	119356963	-	Cpha266_1146	-	hypothetical protein
1107	 45.42	0	1294689..1294928	-	79	119356964	-	Cpha266_1147	-	hypothetical protein
1108	 47.66	0	1295030..1295371	+	113	119356965	-	Cpha266_1148	-	hypothetical protein
1109	 46.76	0	1295544..1296362	-	272	119356966	-	Cpha266_1149	-	hypothetical protein
1110	 48.85	0	1296359..1297138	-	259	119356967	-	Cpha266_1150	-	hypothetical protein
1111	 49.19	0	1297308..1297799	+	163	119356968	-	Cpha266_1151	-	putative transcriptional regulator
1112	 47.46	0	1298041..1298925	+	294	119356969	-	Cpha266_1152	-	prophage antirepressor
1113	 48.62	0	1299002..1300048	+	348	119356970	-	Cpha266_1153	-	transposase and inactivated derivatives
1114	 55.01	+1	1300241..1301776	+	511	119356971	-	Cpha266_1154	-	hypothetical protein
1115	 55.92	+1	1301794..1303626	+	610	119356972	-	Cpha266_1155	-	hypothetical protein
1116	 61.80	+2	1304074..1304916	+	280	119356973	-	Cpha266_1156	-	short-chain dehydrogenase/reductase SDR
1117	 47.34	0	1305135..1305698	+	187	119356974	-	Cpha266_1157	-	methyltransferase type 11
1118	 47.89	0	1305699..1305911	+	70	119356975	-	Cpha266_1158	-	hypothetical protein
1119	 53.54	+1	1306173..1306865	-	230	119356976	-	Cpha266_1159	-	peptidase, membrane zinc metallopeptidase, putative
1120	 52.09	0	1307084..1308421	+	445	119356977	-	Cpha266_1160	-	nodulation efficiency protein NfeD
1121	 49.00	0	1308424..1309170	+	248	119356978	-	Cpha266_1161	-	SPFH domain-containing protein/band 7 family protein
1122	 45.45	0	1309213..1309674	+	153	119356979	-	Cpha266_1162	-	UspA domain-containing protein
1123	 47.97	0	1309713..1310744	-	343	119356980	-	Cpha266_1163	-	arginine/ornithine transport system ATPase
1124	 51.77	0	1310741..1312882	-	713	119356981	-	Cpha266_1164	-	methylmalonyl-CoA mutase
1125	 50.62	0	1312879..1314648	-	589	119356982	-	Cpha266_1165	-	methylmalonyl-CoA mutase
1126	 46.61	0	1314635..1316464	-	609	119356983	-	Cpha266_1166	-	acetyl-CoA carboxylase alpha subunit-like
1127	 44.85	0	1316496..1316903	-	135	119356984	-	Cpha266_1167	-	methylmalonyl-CoA epimerase
1128	 49.53	0	1316900..1318813	-	637	119356985	-	Cpha266_1168	-	AMP-dependent synthetase and ligase
1129	 45.31	0	1319232..1320041	-	269	119356986	ksgA	Cpha266_1169	-	dimethyladenosine transferase
1130	 49.54	0	1320113..1321093	+	326	119356987	-	Cpha266_1170	-	transketolase subunit B
1131	 47.92	0	1321159..1321494	+	111	119356988	-	Cpha266_1171	-	hypothetical protein
1132	 52.27	0	1321501..1322118	+	205	119356989	-	Cpha266_1172	-	recombination protein RecR
1133	 48.41	0	1322177..1323562	+	461	119356990	-	Cpha266_1173	-	zeta-carotene desaturase
1134	 42.27	-1	1324474..1325133	-	219	119356991	-	Cpha266_1174	-	hypothetical protein
1135	 47.56	0	1325591..1326637	-	348	119356992	-	Cpha266_1175	-	radical SAM domain-containing protein
1136	 41.53	-1	1326726..1327091	-	121	119356993	-	Cpha266_1176	-	hypothetical protein
1137	 47.88	0	1328224..1329825	-	533	119356994	-	Cpha266_1177	-	peptide chain release factor 3
1138	 42.11	-1	1330034..1330831	+	265	119356995	-	Cpha266_1178	-	amino acid ABC transporter periplasmic protein
1139	 38.12	-2	1330944..1331966	+	340	119356996	-	Cpha266_1179	-	polar amino acid ABC transporter, inner membrane subunit
1140	 39.24	-2	1331963..1333045	+	360	119356997	-	Cpha266_1180	-	ABC transporter related
1141	 46.25	0	1333347..1333880	+	177	119356998	-	Cpha266_1182	-	inorganic diphosphatase
1142	 48.50	0	1335815..1336315	-	166	119356999	-	Cpha266_1183	-	hypothetical protein
1143	 46.82	0	1336561..1337472	+	303	119357000	-	Cpha266_1184	-	hypothetical protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.