IslandPathversion 1.0

IslandPath Analysis: Chlorobium phaeobacteroides DSM 266



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.61 STD DEV: 4.51
Chlorobium phaeobacteroides DSM 266, complete genome - 1..3133902
2650 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1000	 48.27	0	1168299..1168673	-	124	119356857	-	Cpha266_1030	-	hypothetical protein
1001	 52.54	0	1168804..1170084	-	426	119356858	-	Cpha266_1031	-	DNA-directed DNA polymerase
1002	 50.11	0	1170100..1170552	-	150	119356859	-	Cpha266_1032	-	SOS mutagenesis protein UmuD
1003	 48.82	0	1170773..1171534	+	253	119356860	-	Cpha266_1033	-	phospholipid/glycerol acyltransferase
1004	 50.67	0	1171522..1172190	+	222	119356861	-	Cpha266_1034	-	hypothetical protein
1005	 48.66	0	1172245..1172505	+	86	119356862	-	Cpha266_1035	-	hypothetical protein
1006	 49.11	0	1172621..1173805	+	394	119356863	-	Cpha266_1036	-	hypothetical protein
1007	 47.86	0	1173970..1174788	+	272	119356864	-	Cpha266_1037	-	phosphate binding protein
1008	 49.69	0	1174964..1175776	+	270	119356865	-	Cpha266_1038	-	phosphate binding protein
1009	 49.83	0	1175974..1177137	+	387	119356866	-	Cpha266_1039	-	phosphate ABC transporter, inner membrane subunit PstC
1010	 48.85	0	1177186..1178532	+	448	119356867	-	Cpha266_1040	-	phosphate ABC transporter, inner membrane subunit PstA
1011	 47.02	0	1178545..1179399	+	284	119356868	-	Cpha266_1041	-	phosphate ABC transporter, ATPase subunit
1012	 45.71	0	1179419..1180105	+	228	119356869	-	Cpha266_1042	-	phosphate uptake regulator, PhoU
1013	 45.22	0	1180237..1180968	+	243	119356870	-	Cpha266_1043	-	phosphate uptake regulator, PhoU
1014	 51.66	0	1181072..1182157	+	361	119356871	-	Cpha266_1044	-	RND family efflux transporter MFP subunit
1015	 48.33	0	1182154..1185294	+	1046	119356872	-	Cpha266_1045	-	acriflavin resistance protein
1016	 44.21	0	1185453..1185884	+	143	119356873	-	Cpha266_1046	-	hypothetical protein
1017	 44.99	0	1185859..1187145	+	428	119356874	-	Cpha266_1047	-	hypothetical protein
1018	 49.56	0	1187162..1188424	+	420	119356875	-	Cpha266_1048	-	pentapeptide repeat-containing protein
1019	 45.83	0	1188455..1189342	+	295	119356876	-	Cpha266_1049	-	glycosyl transferase family protein
1020	 52.70	0	1189384..1190142	+	252	119356877	-	Cpha266_1050	-	short-chain dehydrogenase/reductase SDR
1021	 50.36	0	1190218..1191468	+	416	119356878	-	Cpha266_1051	-	hypothetical protein
1022	 47.04	0	1191599..1195114	-	1171	119356879	-	Cpha266_1052	-	patatin
1023	 52.74	0	1195433..1196746	+	437	119356880	-	Cpha266_1053	-	hypothetical protein
1024	 47.84	0	1197332..1198027	-	231	119356881	-	Cpha266_1054	-	hypothetical protein
1025	 51.18	0	1198585..1199217	-	210	119356882	-	Cpha266_1057	-	IstB ATP binding domain-containing protein
1026	 47.44	0	1200434..1201000	+	188	119356883	-	Cpha266_1061	-	hypothetical protein
1027	 44.47	0	1201355..1202512	+	385	119356884	-	Cpha266_1062	-	geranylgeranyl reductase
1028	 51.60	0	1202745..1204775	-	676	119356885	-	Cpha266_1063	-	biotin/lipoyl attachment domain-containing protein
1029	 53.29	+1	1204781..1206238	-	485	119356886	-	Cpha266_1064	-	carbamoyl-phosphate synthase L chain, ATP-binding
1030	 41.95	-1	1207102..1208250	+	382	119356887	-	Cpha266_1066	-	geranylgeranyl reductase
1031	 48.97	0	1208466..1208855	-	129	119356888	-	Cpha266_1067	-	hypothetical protein
1032	 49.71	0	1209056..1209574	+	172	119356889	-	Cpha266_1068	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
1033	 48.72	0	1209785..1210603	+	272	119356890	-	Cpha266_1069	-	acid phosphatase class B
1034	 45.28	0	1210738..1211097	+	119	119356891	-	Cpha266_1070	-	hypothetical protein
1035	 45.10	0	1211171..1212028	+	285	119356892	-	Cpha266_1071	-	hypothetical protein
1036	 49.47	0	1212758..1213612	-	284	119356893	-	Cpha266_1072	-	GCN5-related N-acetyltransferase
1037	 46.59	0	1214077..1215411	+	444	119356894	-	Cpha266_1073	-	NADH dehydrogenase
1038	 49.67	0	1215460..1216677	+	405	119356895	-	Cpha266_1074	-	hypothetical protein
1039	 47.59	0	1216871..1218034	-	387	119356896	-	Cpha266_1075	-	cyclopropane fatty acyl phospholipid synthase
1040	 45.88	0	1218111..1219226	-	371	119356897	-	Cpha266_1076	-	cyclopropane fatty acyl phospholipid synthase
1041	 47.96	0	1219351..1220013	-	220	119356898	-	Cpha266_1077	-	hypothetical protein
1042	 45.70	0	1220082..1220453	-	123	119356899	-	Cpha266_1078	-	hypothetical protein
1043	 50.20	0	1220452..1221672	+	406	119356900	-	Cpha266_1079	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
1044	 38.68	-2	1221650..1222042	-	130	119356901	-	Cpha266_1080	-	anti-sigma-factor antagonist
1045	 45.52	0	1222197..1223156	-	319	119356902	-	Cpha266_1081	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1046	 46.90	0	1223167..1223763	-	198	119356903	-	Cpha266_1082	-	maf protein
1047	 48.39	0	1223760..1225526	-	588	119356904	-	Cpha266_1083	-	Na+/solute symporter
1048	 47.59	0	1225645..1226556	-	303	119356905	-	Cpha266_1084	-	ribokinase-like domain-containing protein
1049	 47.85	0	1226746..1228695	-	649	119356906	-	Cpha266_1085	-	alpha-amylase family protein
1050	 48.52	0	1228803..1229579	+	258	119356907	truA	Cpha266_1086	-	tRNA pseudouridine synthase A
1051	 46.90	0	1229626..1231578	+	650	119356908	-	Cpha266_1087	-	lytic transglycosylase, catalytic
1052	 44.61	0	1231774..1232961	+	395	119356909	-	Cpha266_1088	-	arsenite-activated ATPase ArsA
1053	 47.25	0	1233048..1234628	-	526	119356910	-	Cpha266_1089	-	D-3-phosphoglycerate dehydrogenase
1054	 47.23	0	1234985..1236049	+	354	119356911	-	Cpha266_1090	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1055	 46.57	0	1236080..1236283	+	67	119356912	-	Cpha266_1091	-	hypothetical protein
1056	 45.56	0	1236377..1237513	+	378	119356913	-	Cpha266_1092	-	hypothetical protein
1057	 47.15	0	1237613..1238314	-	233	119356914	-	Cpha266_1093	-	hypothetical protein
1058	 45.80	0	1238568..1239008	+	146	119356915	-	Cpha266_1094	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
1059	 48.15	0	1239049..1240728	+	559	119356916	-	Cpha266_1095	-	glucose-6-phosphate isomerase
1060	 42.99	-1	1240882..1242237	-	451	119356917	-	Cpha266_1096	-	hypothetical protein
1061	 43.28	-1	1242262..1243065	-	267	119356918	-	Cpha266_1097	-	hypothetical protein
1062	 43.57	-1	1243058..1244347	-	429	119356919	-	Cpha266_1098	-	hypothetical protein
1063	 42.19	-1	1244452..1245705	-	417	119356920	-	Cpha266_1099	-	3-oxoacyl-(ACP) synthase III
1064	 45.85	0	1245802..1246512	-	236	119356921	-	Cpha266_1100	-	ABC transporter related
1065	 49.40	0	1246618..1247370	-	250	119356922	-	Cpha266_1101	-	short-chain dehydrogenase/reductase SDR
1066	 47.19	0	1247367..1248131	-	254	119356923	-	Cpha266_1102	-	short-chain dehydrogenase/reductase SDR
1067	 48.46	0	1248131..1249366	-	411	119356924	-	Cpha266_1103	-	beta-ketoacyl synthase
1068	 40.59	-1	1249374..1249676	-	100	119356925	-	Cpha266_1104	-	hypothetical protein
1069	 46.99	0	1249692..1250423	-	243	119356926	-	Cpha266_1105	-	hypothetical protein
1070	 43.40	-1	1250420..1250866	-	148	119356927	-	Cpha266_1106	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ
1071	 47.15	0	1251081..1251449	-	122	119356928	-	Cpha266_1107	-	holo-acyl-carrier-protein synthase
1072	 49.89	0	1251617..1252921	-	434	119356929	-	Cpha266_1108	-	adenylosuccinate lyase
1073	 49.26	0	1253038..1254450	-	470	119356930	-	Cpha266_1109	-	metal dependent phosphohydrolase
1074	 48.02	0	1254461..1255522	-	353	119356931	-	Cpha266_1110	-	oxidoreductase domain-containing protein
1075	 47.27	0	1255528..1256862	-	444	119356932	-	Cpha266_1111	-	major facilitator transporter
1076	 48.64	0	1256908..1257789	-	293	119356933	-	Cpha266_1112	-	periplasmic binding protein
1077	 49.32	0	1258441..1260141	+	566	119356934	-	Cpha266_1114	-	Na+/Pi-cotransporter
1078	 47.79	0	1260809..1262758	+	649	119356935	-	Cpha266_1115	-	TonB-dependent receptor
1079	 56.74	+1	1262801..1263445	+	214	119356936	-	Cpha266_1116	-	cob(II)yrinic acid a,c-diamide reductase
1080	 52.31	0	1263439..1264956	+	505	119356937	-	Cpha266_1117	-	adenosylcobyric acid synthase (glutamine-hydrolysing)
1081	 51.32	0	1264953..1266053	+	366	119356938	-	Cpha266_1118	-	L-threonine O-3-phosphate decarboxylase
1082	 54.40	+1	1266050..1267003	+	317	119356939	-	Cpha266_1119	-	adenosylcobinamide-phosphate synthase
1083	 54.72	+1	1267003..1267563	+	186	119356940	-	Cpha266_1120	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
1084	 54.07	+1	1267570..1268601	+	343	119356941	-	Cpha266_1121	-	transport system permease protein
1085	 54.05	+1	1268603..1269886	+	427	119356942	-	Cpha266_1122	-	ABC transporter related
1086	 47.78	0	1269901..1270710	+	269	119356943	-	Cpha266_1123	-	xylose isomerase domain-containing protein
1087	 50.00	0	1271739..1272014	+	91	119356944	-	Cpha266_1124	-	hypothetical protein
1088	 53.99	+1	1272059..1272547	+	162	119356945	-	Cpha266_1125	-	hypothetical protein
1089	 50.29	0	1272900..1274975	+	691	119356946	-	Cpha266_1126	-	ATP-dependent DNA helicase RecQ
1090	 50.45	0	1274978..1276297	+	439	119356947	-	Cpha266_1127	-	hypothetical protein
1091	 50.48	0	1276385..1279183	+	932	119356948	-	Cpha266_1128	-	type III restriction enzyme, res subunit
1092	 48.81	0	1279185..1280612	+	475	119356949	-	Cpha266_1129	-	putative transcriptional regulator
1093	 51.74	0	1280656..1282317	+	553	119356950	-	Cpha266_1130	-	N-6 DNA methylase
1094	 42.59	-1	1282314..1283555	+	413	119356951	-	Cpha266_1131	-	restriction modification system DNA specificity subunit
1095	 48.62	0	1283753..1284727	+	324	119356952	-	Cpha266_1132	-	hypothetical protein
1096	 44.25	0	1284724..1285905	+	393	119356953	-	Cpha266_1133	-	hypothetical protein
1097	 42.58	-1	1285959..1286315	+	118	119356954	-	Cpha266_1134	-	hypothetical protein
1098	 50.89	0	1286645..1288216	+	523	119356955	-	Cpha266_1136	-	integrase catalytic subunit
1099	 51.25	0	1288222..1289058	+	278	119356956	-	Cpha266_1137	-	IstB ATP binding domain-containing protein
48.61	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.