IslandPathversion 1.0

IslandPath Analysis: Chlorobium chlorochromatii CaD3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.16 STD DEV: 5.32
Chlorobium chlorochromatii CaD3, complete genome - 1..2572079
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
897	 35.70	-1	1246137..1246601	+	154	78188881	-	Cag_0912	-	hypothetical protein
898	 33.92	-1	1246954..1247295	+	113	78188882	-	Cag_0913	-	hypothetical protein
899	 36.09	-1	1247299..1247625	+	108	78188883	-	Cag_0914	-	XRE family transcriptional regulator
900	 45.43	0	1248356..1248760	+	134	78188884	-	Cag_0916	-	C-type cytochrome, putative
901	 46.43	0	1248852..1249187	-	111	78188885	-	Cag_0917	-	cytochrome c-555
902	 46.59	0	1249459..1250016	+	185	78188886	-	Cag_0918	-	cytochrome c family protein
903	 47.67	0	1250109..1251350	-	413	78188887	-	Cag_0919	-	ABC transporter permease
904	 47.12	0	1251366..1252634	-	422	78188888	-	Cag_0920	-	hypothetical protein
905	 46.54	0	1253056..1254312	-	418	78188889	-	Cag_0921	-	diguanylate cyclase
906	 47.76	0	1254566..1255258	+	230	78188890	-	Cag_0922	-	hypothetical protein
907	 45.50	0	1255263..1256750	+	495	78188891	-	Cag_0923	-	amino acid permease
908	 48.64	0	1256755..1257453	+	232	78188892	-	Cag_0924	-	short chain dehydrogenase/reductase family oxidoreductase
909	 47.23	0	1257479..1258147	+	222	78188893	-	Cag_0925	-	thymidylate kinase
910	 37.05	-1	1258255..1259517	+	420	78188894	-	Cag_0926	-	hypothetical protein
911	 44.48	0	1259555..1262722	+	1055	78188895	-	Cag_0927	-	Beta-phosphoglucomutase hydrolase
912	 38.14	-1	1262809..1263849	+	346	78188896	-	Cag_0928	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
913	 45.80	0	1263894..1264655	+	253	78188897	-	Cag_0929	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
914	 43.78	0	1264935..1265384	+	149	78188898	-	Cag_0930	-	phenylacetic acid degradation-related protein
915	 43.28	0	1265432..1266829	+	465	78188899	-	Cag_0931	-	Elongator protein 3/MiaB/NifB
916	 46.09	0	1266950..1268767	-	605	78188900	aspS	Cag_0932	-	aspartyl-tRNA synthetase
917	 49.21	0	1268930..1269433	-	167	78188901	-	Cag_0933	-	DNA polymerase III, gamma/tau subunit
918	 46.68	0	1269562..1270752	-	396	78188902	-	Cag_0934	-	ATPase
919	 45.57	0	1270957..1272255	-	432	78188903	-	Cag_0935	-	ribonuclease BN
920	 46.91	0	1272299..1273675	-	458	78188904	-	Cag_0936	-	MFS transporter family protein
921	 47.09	0	1273704..1274408	-	234	78188905	-	Cag_0937	-	phosphoribosylformylglycinamidine synthase I
922	 44.31	0	1274488..1274742	-	84	78188906	-	Cag_0938	-	phosphoribosylformylglycinamidine synthetase PurS
923	 45.27	0	1274779..1275582	-	267	78188907	-	Cag_0939	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
924	 44.96	0	1275940..1276980	-	346	78188908	-	Cag_0940	-	hypothetical protein
925	 45.94	0	1276984..1278252	-	422	78188909	-	Cag_0941	-	CAAX prenyl protease 1, putative
926	 47.68	0	1278328..1279212	-	294	78188910	-	Cag_0942	-	carbon-nitrogen hydrolase family protein
927	 49.28	0	1279243..1280139	-	298	78188911	-	Cag_0943	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
928	 46.89	0	1280132..1281193	-	353	78188912	-	Cag_0944	-	thioredoxin reductase, putative
929	 43.75	0	1281218..1281553	-	111	78188913	-	Cag_0945	-	hypothetical protein
930	 45.64	0	1281788..1283380	+	530	78188914	-	Cag_0946	-	peptide chain release factor 3
931	 42.13	0	1283462..1285405	+	647	78188915	-	Cag_0947	-	D-alanine-D-alanine ligase and related ATP-grasp enzyme-like
932	 31.63	-2	1285421..1285891	-	156	78188916	-	Cag_0948	-	hypothetical protein
933	 33.16	-2	1286069..1287790	+	573	78188917	-	Cag_0949	-	D-alanine-D-alanine ligase and related ATP-grasp enzyme-like
934	 41.45	0	1288189..1289112	-	307	78188918	-	Cag_0950	-	K+-dependent Na+/Ca+ exchanger related-protein
935	 46.98	0	1289134..1289712	-	192	78188919	-	Cag_0951	-	hypothetical protein
936	 43.50	0	1289804..1290718	-	304	78188920	-	Cag_0952	-	polysulfide reductase, subunit C, putative
937	 50.67	+1	1290738..1291337	-	199	78188921	-	Cag_0953	-	polysulfide reductase, subunit B, putative
938	 49.17	0	1291484..1294267	-	927	78188922	-	Cag_0954	-	twin-arginine translocation pathway signal
939	 44.98	0	1294375..1295190	-	271	78188923	-	Cag_0955	-	rhodanese-like protein
940	 41.13	0	1295446..1295727	+	93	78188924	-	Cag_0956	-	prevent-host-death protein
941	 39.09	0	1295724..1296053	+	109	78188925	-	Cag_0957	-	hypothetical protein
942	 35.71	-1	1296190..1296525	-	111	78188926	-	Cag_0958	-	hypothetical protein
943	 47.73	0	1296538..1298823	-	761	78188927	-	Cag_0959	-	heavy metal translocating P-type ATPase
944	 47.22	0	1298841..1299704	-	287	78188928	-	Cag_0960	-	bifunctional methionine sulfoxide reductase B/A protein
945	 50.50	+1	1299817..1300317	-	166	78188929	-	Cag_0961	-	phosphoesterase, PA-phosphatase related
946	 49.11	0	1300726..1301454	-	242	78188930	-	Cag_0962	-	hypothetical protein
947	 45.54	0	1301514..1302488	-	324	78188931	-	Cag_0963	-	polyprenyl synthetase
948	 40.47	0	1302885..1303613	+	242	78188932	-	Cag_0964	-	Sec-independent periplasmic protein translocase
949	 49.14	0	1303643..1304281	-	212	78188933	-	Cag_0965	-	dephospho-CoA kinase
950	 50.00	+1	1304271..1304624	-	117	78188934	-	Cag_0966	-	hypothetical protein
951	 43.05	0	1304764..1305360	+	198	78188935	-	Cag_0967	-	superoxide dismutase
952	 47.14	0	1305530..1305949	-	139	78188936	-	Cag_0968	-	hypothetical protein
953	 43.56	0	1305981..1307300	-	439	78188937	-	Cag_0969	-	hypothetical protein
954	 39.68	0	1307374..1307751	-	125	78188938	-	Cag_0970	-	hypothetical protein
955	 47.96	0	1307812..1310922	-	1036	78188939	-	Cag_0971	-	NolG efflux transporter
956	 52.54	+1	1310941..1312002	-	353	78188940	-	Cag_0972	-	secretion protein HlyD
957	 39.89	0	1312099..1312830	-	243	78188941	-	Cag_0973	-	transcriptional regulator, putative
958	 42.79	0	1312996..1313682	-	228	78188942	-	Cag_0974	-	hypothetical protein
959	 44.00	0	1314105..1314329	+	74	78188943	-	Cag_0975	-	chlorosome envelope protein B
960	 47.05	0	1314434..1315111	+	225	78188944	-	Cag_0976	-	HAD family hydrolase
961	 40.60	0	1315144..1316697	+	517	78188945	-	Cag_0977	-	hypothetical protein
962	 36.55	-1	1316694..1317440	+	248	78188946	-	Cag_0978	-	ParaA family ATPase
963	 44.90	0	1317496..1318221	-	241	78188947	-	Cag_0979	-	ATPase
964	 32.97	-2	1318588..1319691	+	367	78188948	-	Cag_0980	-	hypothetical protein
965	 32.15	-2	1319847..1321196	+	449	78188949	-	Cag_0981	-	hypothetical protein
966	 31.98	-2	1321209..1324469	+	1086	78188950	-	Cag_0982	-	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like
967	 50.46	+1	1324771..1328595	+	1274	78188951	-	Cag_0983	-	magnesium-chelatase, subunit H
968	 49.11	0	1328822..1330063	-	413	78188952	-	Cag_0984	-	hypothetical protein
969	 38.15	-1	1330276..1330524	+	82	78188953	-	Cag_0985	-	XRE family plasmid maintenance system antidote protein
970	 48.25	0	1330600..1332054	+	484	78188954	-	Cag_0986	-	outer membrane efflux protein, putative
971	 47.30	0	1332330..1333589	+	419	78188955	-	Cag_0987	-	secretion protein HlyD
972	 50.71	+1	1333586..1334287	+	233	78188956	-	Cag_0988	-	ATPase
973	 47.08	0	1334382..1335596	+	404	78188957	-	Cag_0989	-	ABC transporter efflux protein
974	 47.98	0	1335619..1336854	+	411	78188958	-	Cag_0990	-	ABC transporter efflux protein
975	 43.79	0	1337042..1338016	-	324	78188959	-	Cag_0991	-	hypothetical protein
976	 38.25	-1	1338727..1338909	+	60	78188960	-	Cag_0992	-	hypothetical protein
977	 36.33	-1	1338916..1339215	+	99	78188961	-	Cag_0993	-	hypothetical protein
978	 36.61	-1	1339237..1339419	+	60	78188962	-	Cag_0994	-	hypothetical protein
979	 42.65	0	1339426..1339704	+	92	78188963	-	Cag_0995	-	hypothetical protein
980	 54.55	+1	1340116..1340511	+	131	78188964	-	Cag_0997	-	hypothetical protein
981	 54.12	+1	1340508..1341017	+	169	78188965	-	Cag_0998	-	hypothetical protein
982	 54.57	+1	1341019..1341696	+	225	78188966	-	Cag_0999	-	hypothetical protein
983	 59.43	+2	1342028..1342414	+	128	78188967	-	Cag_1000	-	hypothetical protein
984	 59.65	+2	1342476..1342760	+	94	78188968	-	Cag_1001	-	hypothetical protein
985	 56.55	+2	1343069..1343335	+	88	78188969	-	Cag_1002	-	hypothetical protein
986	 60.05	+2	1343294..1343671	-	125	78188970	-	Cag_1003	-	hypothetical protein
987	 38.83	-1	1343970..1344260	-	96	78188971	-	Cag_1004	-	hypothetical protein
988	 44.86	0	1344306..1345337	-	343	78188972	-	Cag_1005	-	hypothetical protein
989	 45.83	0	1345334..1345981	-	215	78188973	-	Cag_1006	-	hypothetical protein
990	 39.86	0	1346002..1346844	-	280	78188974	-	Cag_1007	-	CRISPR-associated Csh2 family protein
991	 40.80	0	1346873..1348801	-	642	78188975	-	Cag_1008	-	CRISPR-associated Csd1 family protein
992	 40.17	0	1348798..1349514	-	238	78188976	-	Cag_1009	-	CRISPR-associated Csd1 family protein
993	 40.16	0	1349524..1351998	-	824	78188977	-	Cag_1010	-	CRISPR-associated helicase Cas3 family protein protein
994	 51.74	+1	1352481..1353599	-	372	78188978	-	Cag_1011	-	L-threonine-O-3-phosphate decarboxylase
995	 50.76	+1	1353577..1355097	-	506	78188979	-	Cag_1012	-	cobyric acid synthase CobQ
996	 51.47	+1	1355091..1355735	-	214	78188980	-	Cag_1013	-	nitroreductase family protein
44.16	MEAN

5.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.