IslandPath Analysis: Chlorobium chlorochromatii CaD3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.16   STD DEV: 5.32
Chlorobium chlorochromatii CaD3, complete genome - 1..2572079
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
833	 49.89	+1	1177760..1179976	-	738	78188817	-	Cag_0847	-	helicase RecD/TraA
834	 40.45	0	1179976..1180284	-	102	78188818	-	Cag_0848	-	histone-like DNA-binding protein
835	 43.53	0	1180454..1181149	-	231	78188819	-	Cag_0849	-	ATPase
836	 44.44	0	1181142..1181870	-	242	78188820	-	Cag_0850	-	ATPase
837	 43.81	0	1181867..1182868	-	333	78188821	-	Cag_0851	-	branched-chain amino acid ABC transporter, permease protein
838	 45.98	0	1182869..1183738	-	289	78188822	-	Cag_0852	-	branched-chain amino acid ABC transporter, permease protein
839	 45.11	0	1183878..1185023	-	381	78188823	-	Cag_0853	-	branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative
840	 37.39	-1	1185124..1185345	-	73	78188824	-	Cag_0854	-	hypothetical protein
841	 46.45	0	1185433..1185615	+	60	78188825	-	Cag_0855	-	hypothetical protein
842	 39.50	0	1186090..1188861	-	923	78188826	-	Cag_0856	-	hypothetical protein
843	 36.36	-1	1189209..1189373	-	54	78188827	-	Cag_0857	-	hypothetical protein
844	 37.00	-1	1189360..1189632	-	90	78188828	-	Cag_0858	-	hypothetical protein
845	 46.90	0	1189816..1191768	-	650	78188829	-	Cag_0859	-	oxaloacetate decarboxylase, alpha subunit
846	 47.60	0	1192034..1193554	-	506	78188830	-	Cag_0860	-	Fe-S type hydro-lyase tartrate/fumarate alpha and beta region
847	 48.78	0	1193843..1195441	+	532	78188831	-	Cag_0861	-	hypothetical protein
848	 41.26	0	1195530..1196462	-	310	78188832	-	Cag_0862	-	malate dehydrogenase
849	 44.96	0	1196731..1196988	-	85	78188833	rpmA	Cag_0863	-	50S ribosomal protein L27
850	 42.96	0	1197031..1197321	-	96	78188834	rplU	Cag_0864	-	50S ribosomal protein L21
851	 41.77	0	1197469..1197930	-	153	78188835	-	Cag_0865	-	hypothetical protein
852	 46.21	0	1197989..1198252	-	87	78188836	-	Cag_0866	-	hypothetical protein
853	 44.44	0	1198249..1198545	-	98	78188837	-	Cag_0867	-	hypothetical protein
854	 53.06	+1	1198650..1200185	-	511	78188838	-	Cag_0868	-	RND efflux system, outer membrane lipoprotein, NodT
855	 50.55	+1	1200223..1200954	-	243	78188839	-	Cag_0869	-	ATPase
856	 48.71	0	1200958..1202160	-	400	78188840	-	Cag_0870	-	ABC transporter, permease protein
857	 56.18	+2	1202157..1203377	-	406	78188841	-	Cag_0871	-	secretion protein HlyD
858	 34.50	-1	1203569..1204939	+	456	78188842	-	Cag_0872	-	hypothetical protein
859	 39.03	0	1204936..1206639	+	567	78188843	-	Cag_0873	-	TPR repeat-containing protein
860	 42.44	0	1206683..1207846	+	387	78188844	-	Cag_0874	-	hypothetical protein
861	 47.14	0	1207864..1208580	+	238	78188845	-	Cag_0875	-	glutamine amidotransferase, class I
862	 55.36	+2	1208588..1209967	+	459	78188846	-	Cag_0876	-	DNA photolyase, class 2
863	 27.10	-2	1210075..1210812	-	245	78188847	-	Cag_0877	-	hypothetical protein
864	 29.73	-2	1210809..1211891	-	360	78188848	-	Cag_0878	-	hypothetical protein
865	 43.02	0	1211927..1212979	-	350	78188849	pfkA	Cag_0879	-	6-phosphofructokinase
866	 28.70	-2	1213263..1213715	-	150	78188850	-	Cag_0880	-	hypothetical protein
867	 34.64	-1	1213776..1213928	-	50	78188851	-	Cag_0881	-	hypothetical protein
868	 45.09	0	1213988..1215442	-	484	78188852	-	Cag_0882	-	sulfide-quinone reductase, putative
869	 38.73	-1	1215679..1215882	-	67	78188853	-	Cag_0883	-	hypothetical protein
870	 49.56	+1	1215951..1216628	-	225	78188854	-	Cag_0884	-	hypothetical protein
871	 48.06	0	1216712..1217356	-	214	78188855	-	Cag_0885	-	methyltransferase, putative
872	 50.75	+1	1217353..1217886	-	177	78188856	-	Cag_0886	-	hypothetical protein
873	 43.86	0	1217902..1218300	-	132	78188857	-	Cag_0887	-	hypothetical protein
874	 50.54	+1	1218452..1219660	-	402	78188858	-	Cag_0888	-	alcohol dehydrogenase, iron-containing
875	 46.96	0	1219728..1221041	-	437	78188859	-	Cag_0889	-	transporter, putative
876	 49.42	0	1221177..1221692	+	171	78188860	-	Cag_0890	-	methylated-DNA-(protein)-cysteine S-methyltransferase
877	 45.69	0	1221741..1222622	-	293	78188861	-	Cag_0891	-	metacaspase
878	 43.45	0	1222701..1224104	-	467	78188862	-	Cag_0892	-	internalin-related protein
879	 48.43	0	1224229..1227798	+	1189	78188863	-	Cag_0893	-	DNA polymerase III, alpha subunit
880	 30.74	-2	1227874..1229610	-	578	78188864	-	Cag_0894	-	hypothetical protein
881	 47.15	0	1229607..1230062	-	151	78188865	-	Cag_0895	-	hypothetical protein
882	 47.66	0	1230109..1230897	-	262	78188866	-	Cag_0896	-	methyltransferase, putative
883	 35.90	-1	1231067..1231261	-	64	78188867	-	Cag_0897	-	hypothetical protein
884	 50.49	+1	1231394..1232722	-	442	78188868	pyrC	Cag_0898	-	dihydroorotase
885	 50.26	+1	1232975..1233559	+	194	78188869	-	Cag_0899	-	5-formyltetrahydrofolate cyclo-ligase, putative
886	 44.16	0	1233594..1235717	+	707	78188870	-	Cag_0900	-	polyphosphate kinase
887	 46.14	0	1235714..1236166	+	150	78188871	-	Cag_0901	-	ribose/galactose isomerase
888	 45.45	0	1236145..1236837	+	230	78188872	-	Cag_0902	-	XRE family transcriptional regulator
889	 51.46	+1	1237181..1238410	+	409	78188873	-	Cag_0903	-	peptidase M20D, amidohydrolase
890	 47.62	0	1238471..1239058	-	195	78188874	-	Cag_0904	-	hypothetical protein
891	 51.34	+1	1239058..1240140	-	360	78188875	-	Cag_0905	-	D-alanine--D-alanine ligase
892	 50.44	+1	1240368..1241162	+	264	78188876	-	Cag_0906	-	lipoate-protein ligase A, putative
893	 49.40	0	1241490..1242323	+	277	78188877	panB	Cag_0907	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
894	 37.94	-1	1242588..1242869	+	93	78188878	-	Cag_0908	-	prevent-host-death protein
895	 38.65	-1	1242866..1243147	+	93	78188879	-	Cag_0909	-	hypothetical protein
896	 31.08	-2	1243727..1245412	+	561	78188880	-	Cag_0911	-	hypothetical protein
897	 35.70	-1	1246137..1246601	+	154	78188881	-	Cag_0912	-	hypothetical protein
898	 33.92	-1	1246954..1247295	+	113	78188882	-	Cag_0913	-	hypothetical protein
899	 36.09	-1	1247299..1247625	+	108	78188883	-	Cag_0914	-	XRE family transcriptional regulator
900	 45.43	0	1248356..1248760	+	134	78188884	-	Cag_0916	-	C-type cytochrome, putative
901	 46.43	0	1248852..1249187	-	111	78188885	-	Cag_0917	-	cytochrome c-555
902	 46.59	0	1249459..1250016	+	185	78188886	-	Cag_0918	-	cytochrome c family protein
903	 47.67	0	1250109..1251350	-	413	78188887	-	Cag_0919	-	ABC transporter permease
904	 47.12	0	1251366..1252634	-	422	78188888	-	Cag_0920	-	hypothetical protein
905	 46.54	0	1253056..1254312	-	418	78188889	-	Cag_0921	-	diguanylate cyclase
906	 47.76	0	1254566..1255258	+	230	78188890	-	Cag_0922	-	hypothetical protein
907	 45.50	0	1255263..1256750	+	495	78188891	-	Cag_0923	-	amino acid permease
908	 48.64	0	1256755..1257453	+	232	78188892	-	Cag_0924	-	short chain dehydrogenase/reductase family oxidoreductase
909	 47.23	0	1257479..1258147	+	222	78188893	-	Cag_0925	-	thymidylate kinase
910	 37.05	-1	1258255..1259517	+	420	78188894	-	Cag_0926	-	hypothetical protein
911	 44.48	0	1259555..1262722	+	1055	78188895	-	Cag_0927	-	Beta-phosphoglucomutase hydrolase
912	 38.14	-1	1262809..1263849	+	346	78188896	-	Cag_0928	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
913	 45.80	0	1263894..1264655	+	253	78188897	-	Cag_0929	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
914	 43.78	0	1264935..1265384	+	149	78188898	-	Cag_0930	-	phenylacetic acid degradation-related protein
915	 43.28	0	1265432..1266829	+	465	78188899	-	Cag_0931	-	Elongator protein 3/MiaB/NifB
916	 46.09	0	1266950..1268767	-	605	78188900	aspS	Cag_0932	-	aspartyl-tRNA synthetase
917	 49.21	0	1268930..1269433	-	167	78188901	-	Cag_0933	-	DNA polymerase III, gamma/tau subunit
918	 46.68	0	1269562..1270752	-	396	78188902	-	Cag_0934	-	ATPase
919	 45.57	0	1270957..1272255	-	432	78188903	-	Cag_0935	-	ribonuclease BN
920	 46.91	0	1272299..1273675	-	458	78188904	-	Cag_0936	-	MFS transporter family protein
921	 47.09	0	1273704..1274408	-	234	78188905	-	Cag_0937	-	phosphoribosylformylglycinamidine synthase I
922	 44.31	0	1274488..1274742	-	84	78188906	-	Cag_0938	-	phosphoribosylformylglycinamidine synthetase PurS
923	 45.27	0	1274779..1275582	-	267	78188907	-	Cag_0939	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
924	 44.96	0	1275940..1276980	-	346	78188908	-	Cag_0940	-	hypothetical protein
925	 45.94	0	1276984..1278252	-	422	78188909	-	Cag_0941	-	CAAX prenyl protease 1, putative
926	 47.68	0	1278328..1279212	-	294	78188910	-	Cag_0942	-	carbon-nitrogen hydrolase family protein
927	 49.28	0	1279243..1280139	-	298	78188911	-	Cag_0943	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
928	 46.89	0	1280132..1281193	-	353	78188912	-	Cag_0944	-	thioredoxin reductase, putative
929	 43.75	0	1281218..1281553	-	111	78188913	-	Cag_0945	-	hypothetical protein
930	 45.64	0	1281788..1283380	+	530	78188914	-	Cag_0946	-	peptide chain release factor 3
931	 42.13	0	1283462..1285405	+	647	78188915	-	Cag_0947	-	D-alanine-D-alanine ligase and related ATP-grasp enzyme-like
932	 31.63	-2	1285421..1285891	-	156	78188916	-	Cag_0948	-	hypothetical protein
44.16	MEAN

5.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.