IslandPath Analysis: Chlorobium chlorochromatii CaD3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.16   STD DEV: 5.32
Chlorobium chlorochromatii CaD3, complete genome - 1..2572079
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
804	 49.40	0	1143252..1144079	+	275	78188788	-	Cag_0817	-	phosphomethylpyrimidine kinase
805	 36.39	-1	1144432..1144824	-	130	78188789	-	Cag_0818	-	hypothetical protein
806	 31.67	-2	1144817..1145056	-	79	78188790	-	Cag_0819	-	hypothetical protein
807	 39.30	0	1145221..1146225	-	334	78188791	-	Cag_0820	-	hypothetical protein
808	 47.61	0	1146374..1147711	-	445	78188792	-	Cag_0821	-	UDP-glucose/GDP-mannose dehydrogenase family protein
809	 45.66	0	1147844..1148695	-	283	78188793	-	Cag_0822	-	hypothetical protein
810	 46.94	0	1148836..1150422	-	528	78188794	-	Cag_0823	-	aminopeptidase
811	 46.29	0	1150406..1151470	-	354	78188795	-	Cag_0824	-	DHH family protein
812	 48.86	0	1151584..1152684	+	366	78188796	-	Cag_0825	-	hypothetical protein
813	 44.49	0	1152719..1153525	+	268	78188797	-	Cag_0826	-	hypothetical protein
814	 45.66	0	1153534..1154190	+	218	78188798	-	Cag_0827	-	adenylate kinase
815	 50.25	+1	1154285..1156732	+	815	78188799	-	Cag_0828	-	primosomal protein n
816	 41.21	0	1156774..1157103	-	109	78188800	-	Cag_0829	-	transcriptional modulator of MazE/toxin, MazF
817	 42.72	0	1157100..1157312	-	70	78188801	-	Cag_0830	-	hypothetical protein
818	 44.76	0	1157520..1158569	+	349	78188802	-	Cag_0831	-	AsnC family regulatory protein
819	 40.29	0	1158648..1159883	+	411	78188803	-	Cag_0832	-	transposase
820	 40.00	0	1160095..1160334	-	79	78188804	-	Cag_0833	-	hypothetical protein
821	 46.02	0	1160364..1161167	-	267	78188805	-	Cag_0834	-	hypothetical protein
822	 50.00	+1	1161151..1161564	-	137	78188806	-	Cag_0835	-	hypothetical protein
823	 52.38	+1	1162001..1162441	-	146	78188807	-	Cag_0836	-	hypothetical protein
824	 49.00	0	1162740..1163639	+	299	78188808	-	Cag_0837	-	alpha/beta fold family hydrolase
825	 51.77	+1	1163934..1165376	+	480	78188809	-	Cag_0838	-	hypothetical protein
826	 47.20	0	1165383..1166024	+	213	78188810	-	Cag_0839	-	hypothetical protein
827	 33.75	-1	1166236..1170351	-	1371	78188811	-	Cag_0840	-	TPR repeat-containing protein
828	 49.56	+1	1170943..1171170	+	75	78188812	-	Cag_0841	-	hypothetical protein
829	 51.15	+1	1171771..1175148	+	1125	78188813	-	Cag_0843	-	hypothetical protein
830	 51.93	+1	1175145..1176338	+	397	78188814	-	Cag_0844	-	hypothetical protein
831	 43.94	0	1176737..1177132	+	131	78188815	-	Cag_0845	-	XRE family transcriptional regulator
832	 47.65	0	1177160..1177690	-	176	78188816	-	Cag_0846	-	cobalamin biosynthesis protein CobP
833	 49.89	+1	1177760..1179976	-	738	78188817	-	Cag_0847	-	helicase RecD/TraA
834	 40.45	0	1179976..1180284	-	102	78188818	-	Cag_0848	-	histone-like DNA-binding protein
835	 43.53	0	1180454..1181149	-	231	78188819	-	Cag_0849	-	ATPase
836	 44.44	0	1181142..1181870	-	242	78188820	-	Cag_0850	-	ATPase
837	 43.81	0	1181867..1182868	-	333	78188821	-	Cag_0851	-	branched-chain amino acid ABC transporter, permease protein
838	 45.98	0	1182869..1183738	-	289	78188822	-	Cag_0852	-	branched-chain amino acid ABC transporter, permease protein
839	 45.11	0	1183878..1185023	-	381	78188823	-	Cag_0853	-	branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative
840	 37.39	-1	1185124..1185345	-	73	78188824	-	Cag_0854	-	hypothetical protein
841	 46.45	0	1185433..1185615	+	60	78188825	-	Cag_0855	-	hypothetical protein
842	 39.50	0	1186090..1188861	-	923	78188826	-	Cag_0856	-	hypothetical protein
843	 36.36	-1	1189209..1189373	-	54	78188827	-	Cag_0857	-	hypothetical protein
844	 37.00	-1	1189360..1189632	-	90	78188828	-	Cag_0858	-	hypothetical protein
845	 46.90	0	1189816..1191768	-	650	78188829	-	Cag_0859	-	oxaloacetate decarboxylase, alpha subunit
846	 47.60	0	1192034..1193554	-	506	78188830	-	Cag_0860	-	Fe-S type hydro-lyase tartrate/fumarate alpha and beta region
847	 48.78	0	1193843..1195441	+	532	78188831	-	Cag_0861	-	hypothetical protein
848	 41.26	0	1195530..1196462	-	310	78188832	-	Cag_0862	-	malate dehydrogenase
849	 44.96	0	1196731..1196988	-	85	78188833	rpmA	Cag_0863	-	50S ribosomal protein L27
850	 42.96	0	1197031..1197321	-	96	78188834	rplU	Cag_0864	-	50S ribosomal protein L21
851	 41.77	0	1197469..1197930	-	153	78188835	-	Cag_0865	-	hypothetical protein
852	 46.21	0	1197989..1198252	-	87	78188836	-	Cag_0866	-	hypothetical protein
853	 44.44	0	1198249..1198545	-	98	78188837	-	Cag_0867	-	hypothetical protein
854	 53.06	+1	1198650..1200185	-	511	78188838	-	Cag_0868	-	RND efflux system, outer membrane lipoprotein, NodT
855	 50.55	+1	1200223..1200954	-	243	78188839	-	Cag_0869	-	ATPase
856	 48.71	0	1200958..1202160	-	400	78188840	-	Cag_0870	-	ABC transporter, permease protein
857	 56.18	+2	1202157..1203377	-	406	78188841	-	Cag_0871	-	secretion protein HlyD
858	 34.50	-1	1203569..1204939	+	456	78188842	-	Cag_0872	-	hypothetical protein
859	 39.03	0	1204936..1206639	+	567	78188843	-	Cag_0873	-	TPR repeat-containing protein
860	 42.44	0	1206683..1207846	+	387	78188844	-	Cag_0874	-	hypothetical protein
861	 47.14	0	1207864..1208580	+	238	78188845	-	Cag_0875	-	glutamine amidotransferase, class I
862	 55.36	+2	1208588..1209967	+	459	78188846	-	Cag_0876	-	DNA photolyase, class 2
863	 27.10	-2	1210075..1210812	-	245	78188847	-	Cag_0877	-	hypothetical protein
864	 29.73	-2	1210809..1211891	-	360	78188848	-	Cag_0878	-	hypothetical protein
865	 43.02	0	1211927..1212979	-	350	78188849	pfkA	Cag_0879	-	6-phosphofructokinase
866	 28.70	-2	1213263..1213715	-	150	78188850	-	Cag_0880	-	hypothetical protein
867	 34.64	-1	1213776..1213928	-	50	78188851	-	Cag_0881	-	hypothetical protein
868	 45.09	0	1213988..1215442	-	484	78188852	-	Cag_0882	-	sulfide-quinone reductase, putative
869	 38.73	-1	1215679..1215882	-	67	78188853	-	Cag_0883	-	hypothetical protein
870	 49.56	+1	1215951..1216628	-	225	78188854	-	Cag_0884	-	hypothetical protein
871	 48.06	0	1216712..1217356	-	214	78188855	-	Cag_0885	-	methyltransferase, putative
872	 50.75	+1	1217353..1217886	-	177	78188856	-	Cag_0886	-	hypothetical protein
873	 43.86	0	1217902..1218300	-	132	78188857	-	Cag_0887	-	hypothetical protein
874	 50.54	+1	1218452..1219660	-	402	78188858	-	Cag_0888	-	alcohol dehydrogenase, iron-containing
875	 46.96	0	1219728..1221041	-	437	78188859	-	Cag_0889	-	transporter, putative
876	 49.42	0	1221177..1221692	+	171	78188860	-	Cag_0890	-	methylated-DNA-(protein)-cysteine S-methyltransferase
877	 45.69	0	1221741..1222622	-	293	78188861	-	Cag_0891	-	metacaspase
878	 43.45	0	1222701..1224104	-	467	78188862	-	Cag_0892	-	internalin-related protein
879	 48.43	0	1224229..1227798	+	1189	78188863	-	Cag_0893	-	DNA polymerase III, alpha subunit
880	 30.74	-2	1227874..1229610	-	578	78188864	-	Cag_0894	-	hypothetical protein
881	 47.15	0	1229607..1230062	-	151	78188865	-	Cag_0895	-	hypothetical protein
882	 47.66	0	1230109..1230897	-	262	78188866	-	Cag_0896	-	methyltransferase, putative
883	 35.90	-1	1231067..1231261	-	64	78188867	-	Cag_0897	-	hypothetical protein
884	 50.49	+1	1231394..1232722	-	442	78188868	pyrC	Cag_0898	-	dihydroorotase
885	 50.26	+1	1232975..1233559	+	194	78188869	-	Cag_0899	-	5-formyltetrahydrofolate cyclo-ligase, putative
886	 44.16	0	1233594..1235717	+	707	78188870	-	Cag_0900	-	polyphosphate kinase
887	 46.14	0	1235714..1236166	+	150	78188871	-	Cag_0901	-	ribose/galactose isomerase
888	 45.45	0	1236145..1236837	+	230	78188872	-	Cag_0902	-	XRE family transcriptional regulator
889	 51.46	+1	1237181..1238410	+	409	78188873	-	Cag_0903	-	peptidase M20D, amidohydrolase
890	 47.62	0	1238471..1239058	-	195	78188874	-	Cag_0904	-	hypothetical protein
891	 51.34	+1	1239058..1240140	-	360	78188875	-	Cag_0905	-	D-alanine--D-alanine ligase
892	 50.44	+1	1240368..1241162	+	264	78188876	-	Cag_0906	-	lipoate-protein ligase A, putative
893	 49.40	0	1241490..1242323	+	277	78188877	panB	Cag_0907	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
894	 37.94	-1	1242588..1242869	+	93	78188878	-	Cag_0908	-	prevent-host-death protein
895	 38.65	-1	1242866..1243147	+	93	78188879	-	Cag_0909	-	hypothetical protein
896	 31.08	-2	1243727..1245412	+	561	78188880	-	Cag_0911	-	hypothetical protein
897	 35.70	-1	1246137..1246601	+	154	78188881	-	Cag_0912	-	hypothetical protein
898	 33.92	-1	1246954..1247295	+	113	78188882	-	Cag_0913	-	hypothetical protein
899	 36.09	-1	1247299..1247625	+	108	78188883	-	Cag_0914	-	XRE family transcriptional regulator
900	 45.43	0	1248356..1248760	+	134	78188884	-	Cag_0916	-	C-type cytochrome, putative
901	 46.43	0	1248852..1249187	-	111	78188885	-	Cag_0917	-	cytochrome c-555
902	 46.59	0	1249459..1250016	+	185	78188886	-	Cag_0918	-	cytochrome c family protein
903	 47.67	0	1250109..1251350	-	413	78188887	-	Cag_0919	-	ABC transporter permease
44.16	MEAN

5.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.