IslandPathversion 1.0

IslandPath Analysis: Chlorobium chlorochromatii CaD3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.16 STD DEV: 5.32
Chlorobium chlorochromatii CaD3, complete genome - 1..2572079
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
718	 50.71	+1	1002356..1003270	-	304	78188702	-	Cag_0726	-	ABC transporter, periplasmic substrate-binding protein
719	 47.24	0	1003248..1003700	-	150	78188703	-	Cag_0727	-	NUDIX/MutT family protein
720	 45.23	0	1003884..1004858	-	324	78188704	-	Cag_0728	-	fructose-bisphosphate aldolase
721	 46.59	0	1005202..1007253	+	683	78188705	-	Cag_0729	-	peptidase S41A, C-terminal protease
722	 46.18	0	1007315..1008700	-	461	78188706	-	Cag_0730	-	argininosuccinate lyase
723	 39.90	0	1008962..1009555	-	197	78188707	-	Cag_0731	-	adenylylsulfate kinase
724	 44.93	0	1009651..1011771	+	706	78188708	-	Cag_0732	-	TPR repeat-containing protein
725	 46.34	0	1012049..1013539	+	496	78188709	-	Cag_0733	-	hypothetical protein
726	 47.50	0	1013558..1014037	+	159	78188710	-	Cag_0734	-	hypothetical protein
727	 36.83	-1	1014164..1014706	+	180	78188711	-	Cag_0735	-	hypothetical protein
728	 30.33	-2	1014905..1015303	+	132	78188712	-	Cag_0736	-	hypothetical protein
729	 26.54	-2	1015695..1016018	+	107	78188713	-	Cag_0737	-	nucleotidyltransferase
730	 45.04	0	1017685..1044300	+	8871	78188714	-	Cag_0738	-	VCBS
731	 43.50	0	1044584..1045291	+	235	78188715	-	Cag_0739	-	hypothetical protein
732	 48.30	0	1045452..1047215	+	587	78188716	-	Cag_0740	-	Type I secretion system ATPase, PrtD
733	 47.26	0	1049137..1050306	+	389	78188717	-	Cag_0743	-	metalloprotease secretion protein
734	 44.52	0	1050357..1051706	+	449	78188718	-	Cag_0744	-	Type I secretion outer membrane protein, TolC
735	 30.34	-2	1051935..1052669	+	244	78188719	-	Cag_0745	-	glycosyl transferase family protein
736	 32.81	-2	1052782..1053540	+	252	78188720	-	Cag_0746	-	hypothetical protein
737	 33.48	-2	1053574..1054266	+	230	78188721	-	Cag_0747	-	hypothetical protein
738	 41.02	0	1054528..1055763	+	411	78188722	-	Cag_0748	-	transposase
739	 31.61	-2	1055929..1056450	+	173	78188723	-	Cag_0749	-	hypothetical protein
740	 27.54	-2	1056684..1057235	+	183	78188724	-	Cag_0750	-	hypothetical protein
741	 33.88	-1	1057311..1058417	+	368	78188725	-	Cag_0751	-	hypothetical protein
742	 46.88	0	1058684..1061068	+	794	78188726	-	Cag_0752	-	ribonuclease R
743	 51.14	+1	1061268..1061795	+	175	78188727	-	Cag_0753	-	cob(I)alamin adenosyltransferase
744	 50.77	+1	1061795..1062832	+	345	78188728	-	Cag_0754	-	FecCD transport family protein
745	 31.82	-2	1062947..1064464	+	505	78188729	-	Cag_0755	-	hypothetical protein
746	 45.94	0	1064574..1065755	+	393	78188730	-	Cag_0756	-	hypothetical protein
747	 52.28	+1	1065780..1066745	+	321	78188731	-	Cag_0757	-	cobalamin biosynthesis protein CbiB
748	 34.21	-1	1067117..1069855	+	912	78188732	-	Cag_0759	-	hypothetical protein
749	 35.14	-1	1069858..1071798	+	646	78188733	-	Cag_0760	-	DEAD/DEAH box helicase-like
750	 31.50	-2	1071785..1072981	+	398	78188734	-	Cag_0761	-	hypothetical protein
751	 44.44	0	1073861..1074814	+	317	78188735	-	Cag_0762	-	hypothetical protein
752	 51.63	+1	1074992..1078375	+	1127	78188736	-	Cag_0763	-	exodeoxyribonuclease V, RecC subunit
753	 40.29	0	1079123..1080358	-	411	78188737	-	Cag_0765	-	transposase
754	 41.09	0	1080457..1080714	+	85	78188738	-	Cag_0766	-	hypothetical protein
755	 38.50	-1	1080775..1082478	+	567	78188739	-	Cag_0767	-	abortive infection phage resistance protein
756	 51.82	+1	1083474..1087097	+	1207	78188740	-	Cag_0769	-	exodeoxyribonuclease V, beta subunit
757	 53.16	+1	1087346..1089085	+	579	78188741	-	Cag_0770	-	exodeoxyribonuclease V, alpha subunit
758	 53.66	+1	1089177..1089668	+	163	78188742	-	Cag_0771	-	hypothetical protein
759	 44.84	0	1089945..1090952	+	335	78188743	argC	Cag_0772	-	N-acetyl-gamma-glutamyl-phosphate reductase
760	 47.36	0	1091080..1092369	+	429	78188744	argJ	Cag_0773	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
761	 45.64	0	1092604..1093464	+	286	78188745	-	Cag_0774	-	acetylglutamate kinase
762	 45.27	0	1093594..1094598	+	334	78188746	-	Cag_0775	-	ornithine carbamoyltransferase
763	 48.10	0	1094629..1095075	+	148	78188747	-	Cag_0776	-	arginine repressor
764	 46.17	0	1095095..1096294	+	399	78188748	-	Cag_0777	-	argininosuccinate synthase
765	 49.23	0	1096584..1097948	-	454	78188749	-	Cag_0778	-	DNA repair protein RadA
766	 44.14	0	1097968..1098855	-	295	78188750	-	Cag_0779	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
767	 49.48	0	1099153..1099734	+	193	78188751	-	Cag_0780	-	hypothetical protein
768	 45.16	0	1099727..1101163	+	478	78188752	-	Cag_0781	-	sigma-54 factor
769	 46.81	0	1101167..1101715	+	182	78188753	-	Cag_0782	-	ATP-dependent protease peptidase subunit
770	 45.50	0	1101994..1103481	+	495	78188754	hslU	Cag_0783	-	ATP-dependent protease ATP-binding subunit
771	 46.36	0	1103508..1104029	+	173	78188755	-	Cag_0784	-	3-dehydroquinate dehydratase
772	 38.10	-1	1104044..1104463	-	139	78188756	-	Cag_0785	-	hypothetical protein
773	 36.78	-1	1104450..1104710	-	86	78188757	-	Cag_0786	-	hypothetical protein
774	 44.72	0	1104851..1106185	-	444	78188758	-	Cag_0787	-	alkaline phosphatase
775	 40.37	0	1106516..1107751	-	411	78188759	-	Cag_0788	-	transposase
776	 40.58	0	1107977..1109962	+	661	78188760	-	Cag_0789	-	periplasmic sensor hybrid histidine kinase
777	 41.13	0	1110049..1111587	-	512	78188761	-	Cag_0790	-	hypothetical protein
778	 43.09	0	1111663..1112328	-	221	78188762	-	Cag_0791	-	cell wall-associated hydrolase (invasion-associated proteins)-like
779	 43.57	0	1112596..1113660	+	354	78188763	-	Cag_0792	-	basic membrane protein A
780	 42.57	0	1113714..1114709	+	331	78188764	-	Cag_0793	-	3-beta hydroxysteroid dehydrogenase/isomerase family protein
781	 42.21	0	1114825..1115466	+	213	78188765	-	Cag_0794	-	hypothetical protein
782	 44.87	0	1115474..1116331	-	285	78188766	-	Cag_0795	-	prolipoprotein diacylglyceryl transferase
783	 42.69	0	1116440..1117636	+	398	78188767	-	Cag_0796	-	citrate lyase, subunit 1
784	 43.97	0	1117684..1119516	+	610	78188768	-	Cag_0797	-	citrate lyase, subunit 2
785	 47.85	0	1119712..1120875	-	387	78188769	-	Cag_0798	-	aspartate aminotransferase
786	 49.25	0	1120924..1124568	-	1214	78188770	-	Cag_0799	-	oxidoreductase, FAD-binding
787	 47.38	0	1124699..1125538	-	279	78188771	-	Cag_0800	-	hypothetical protein
788	 45.45	0	1125677..1126039	-	120	78188772	rplS	Cag_0801	-	50S ribosomal protein L19
789	 44.40	0	1126066..1126761	-	231	78188773	trmD	Cag_0802	-	tRNA (guanine-N(1)-)-methyltransferase
790	 38.89	0	1126793..1127296	-	167	78188774	-	Cag_0803	-	16S rRNA processing protein RimM
791	 45.26	0	1127329..1127739	-	136	78188775	rpsP	Cag_0804	-	30S ribosomal protein S16
792	 42.63	0	1127792..1129147	-	451	78188776	-	Cag_0805	-	Signal recognition particle protein
793	 46.18	0	1129256..1130290	+	344	78188777	-	Cag_0806	-	bifunctional ADP-heptose synthase
794	 34.70	-1	1130395..1131855	+	486	78188778	-	Cag_0807	-	DNA-methyltransferase, type I restriction-modification enzyme subunit M
795	 35.26	-1	1131852..1132943	+	363	78188779	-	Cag_0808	-	specificity determinant HsdS-like
796	 29.00	-2	1133897..1134358	+	153	78188780	-	Cag_0809	-	transposase
797	 35.42	-1	1134416..1136809	+	797	78188781	-	Cag_0810	-	DEAD/DEAH box helicase-like
798	 46.73	0	1136940..1137581	-	213	78188782	-	Cag_0811	-	hypothetical protein
799	 42.53	0	1137735..1138397	-	220	78188783	-	Cag_0812	-	hypothetical protein
800	 45.83	0	1138419..1140074	-	551	78188784	-	Cag_0813	-	peptidase S41A, C-terminal protease
801	 46.20	0	1140990..1141502	-	170	78188785	-	Cag_0814	-	hypothetical protein
802	 50.37	+1	1141931..1142605	+	224	78188786	-	Cag_0815	-	thiamine-phosphate pyrophosphorylase, putative
803	 51.83	+1	1142602..1143255	+	217	78188787	-	Cag_0816	-	thiamine monophosphate synthase
804	 49.40	0	1143252..1144079	+	275	78188788	-	Cag_0817	-	phosphomethylpyrimidine kinase
805	 36.39	-1	1144432..1144824	-	130	78188789	-	Cag_0818	-	hypothetical protein
806	 31.67	-2	1144817..1145056	-	79	78188790	-	Cag_0819	-	hypothetical protein
807	 39.30	0	1145221..1146225	-	334	78188791	-	Cag_0820	-	hypothetical protein
808	 47.61	0	1146374..1147711	-	445	78188792	-	Cag_0821	-	UDP-glucose/GDP-mannose dehydrogenase family protein
809	 45.66	0	1147844..1148695	-	283	78188793	-	Cag_0822	-	hypothetical protein
810	 46.94	0	1148836..1150422	-	528	78188794	-	Cag_0823	-	aminopeptidase
811	 46.29	0	1150406..1151470	-	354	78188795	-	Cag_0824	-	DHH family protein
812	 48.86	0	1151584..1152684	+	366	78188796	-	Cag_0825	-	hypothetical protein
813	 44.49	0	1152719..1153525	+	268	78188797	-	Cag_0826	-	hypothetical protein
814	 45.66	0	1153534..1154190	+	218	78188798	-	Cag_0827	-	adenylate kinase
815	 50.25	+1	1154285..1156732	+	815	78188799	-	Cag_0828	-	primosomal protein n
816	 41.21	0	1156774..1157103	-	109	78188800	-	Cag_0829	-	transcriptional modulator of MazE/toxin, MazF
817	 42.72	0	1157100..1157312	-	70	78188801	-	Cag_0830	-	hypothetical protein
44.16	MEAN

5.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.