IslandPathversion 1.0

IslandPath Analysis: Chlorobium chlorochromatii CaD3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.16 STD DEV: 5.32
Chlorobium chlorochromatii CaD3, complete genome - 1..2572079
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
588	 30.42	-2	697560..697868	+	102	78188572	-	Cag_0594	-	hypothetical protein
589	 44.88	0	697937..698707	-	256	78188573	-	Cag_0595	-	hypothetical protein
590	 49.04	0	698937..699458	-	173	78188574	-	Cag_0596	-	acetyltransferase
591	 40.29	0	699769..701004	+	411	78188575	-	Cag_0597	-	transposase
592	 30.94	-2	701288..702289	-	333	78188576	-	Cag_0598	-	hypothetical protein
593	 31.41	-2	702757..703590	-	277	78188577	-	Cag_0599	-	hypothetical protein
594	 35.37	-1	703887..704180	-	97	78188578	-	Cag_0600	-	hypothetical protein
595	 36.82	-1	704592..704849	-	85	78188579	-	Cag_0601	-	hypothetical protein
596	 47.80	0	704964..705965	-	333	78188580	-	Cag_0602	-	fructose-1,6-bisphosphatase
597	 49.15	0	706047..707753	+	568	78188581	-	Cag_0603	-	RecJ exonuclease
598	 39.75	0	707865..708752	-	295	78188582	-	Cag_0604	-	hypothetical protein
599	 40.73	0	708736..709668	-	310	78188583	-	Cag_0605	-	glycosyl transferase
600	 43.20	0	709687..711237	-	516	78188584	-	Cag_0606	-	hypothetical protein
601	 41.48	0	711209..711748	-	179	78188585	-	Cag_0607	-	phosphoesterase, PA-phosphatase related
602	 45.78	0	711931..712155	-	74	78188586	-	Cag_0608	-	hypothetical protein
603	 40.89	0	712253..712477	+	74	78188587	-	Cag_0609	-	hypothetical protein
604	 41.67	0	712553..713212	-	219	78188588	-	Cag_0610	-	hypothetical protein
605	 46.72	0	713435..713845	+	136	78188589	-	Cag_0611	-	putative anti-sigma regulatory factor (serine/threonine protein kinase)
606	 48.45	0	713865..715511	+	548	78188590	-	Cag_0612	-	glucose-6-phosphate isomerase
607	 44.63	0	716235..716969	+	244	78188591	-	Cag_0613	-	SapC-related protein
608	 47.72	0	717094..827511	+	36805	78188592	-	Cag_0614	-	parallel beta-helix repeat-containing protein
609	 48.79	0	827589..829322	+	577	78188593	-	Cag_0615	-	Outer membrane protein-like
610	 46.30	0	829510..891450	+	20646	78188594	-	Cag_0616	-	parallel beta-helix repeat-containing protein
611	 38.42	-1	891714..892106	-	130	78188595	-	Cag_0617	-	hypothetical protein
612	 46.22	0	892192..893184	-	330	78188596	-	Cag_0618	-	formate-dependent nitrite reductase membrane component-like
613	 50.09	+1	893187..893729	-	180	78188597	-	Cag_0619	-	NrfC protein
614	 48.88	0	893750..895975	-	741	78188598	-	Cag_0620	-	twin-arginine translocation pathway signal
615	 45.59	0	896297..896704	-	135	78188599	-	Cag_0621	-	cytosolic long-chain acyl-CoA thioester hydrolase family protein
616	 46.55	0	896940..897461	+	173	78188600	-	Cag_0622	-	deoxycytidylate deaminase, putative
617	 49.59	+1	897461..898561	+	366	78188601	-	Cag_0623	-	riboflavin biosynthesis protein RibD
618	 42.60	0	898616..899122	+	168	78188602	-	Cag_0624	-	thiol peroxidase
619	 48.94	0	899122..899781	+	219	78188603	-	Cag_0625	-	riboflavin synthase subunit alpha
620	 48.83	0	899851..901212	+	453	78188604	-	Cag_0626	-	recombination factor protein RarA
621	 48.83	0	901229..902641	+	470	78188605	-	Cag_0627	-	outer membrane efflux protein, putative
622	 46.96	0	902652..903590	-	312	78188606	-	Cag_0628	-	hypothetical protein
623	 43.27	0	903654..904136	-	160	78188607	-	Cag_0629	-	Hit family protein
624	 43.10	0	904565..905158	+	197	78188608	-	Cag_0630	-	hypothetical protein
625	 46.19	0	905140..906189	+	349	78188609	-	Cag_0631	-	ferrochelatase, putative
626	 45.73	0	906205..906801	+	198	78188610	-	Cag_0632	-	TPR repeat-containing protein
627	 44.18	0	906798..907046	+	82	78188611	-	Cag_0633	-	hypothetical protein
628	 39.23	0	907186..907626	+	146	78188612	-	Cag_0634	-	NADH dehydrogenase I, subunit 3
629	 43.11	0	907643..908215	+	190	78188613	-	Cag_0635	-	NADH dehydrogenase (ubiquinone), 20 kDa subunit
630	 41.43	0	908241..908759	+	172	78188614	-	Cag_0636	-	NADH (or F420H2) dehydrogenase, subunit C
631	 41.56	0	908789..909991	+	400	78188615	-	Cag_0637	-	NADH dehydrogenase I, 49 kDa subunit
632	 40.13	0	909988..911106	+	372	78188616	-	Cag_0638	-	NADH dehydrogenase I chain H
633	 38.81	-1	911155..911757	+	200	78188617	-	Cag_0639	-	NADH dehydrogenase I, 23 kDa subunit
634	 35.85	-1	911762..912277	+	171	78188618	-	Cag_0640	-	NADH dehydrogenase I subunit 6
635	 35.51	-1	912292..912612	+	106	78188619	-	Cag_0641	-	NADH dehydrogenase I subunit 4L
636	 41.59	0	912666..914978	+	770	78188620	-	Cag_0642	-	NADH-plastoquinone oxidoreductase, chain 5
637	 40.61	0	915019..916653	+	544	78188621	-	Cag_0643	-	proton-translocating NADH-quinone oxidoreductase, chain M
638	 38.72	-1	916695..918236	+	513	78188622	-	Cag_0644	-	proton-translocating NADH-quinone oxidoreductase, chain N
639	 41.73	0	918428..919213	+	261	78188623	-	Cag_0645	-	hypothetical protein
640	 43.67	0	919226..919699	+	157	78188624	-	Cag_0646	-	hypothetical protein
641	 37.06	-1	919985..921058	+	357	78188625	-	Cag_0647	-	glycosyl transferase family protein
642	 38.99	0	921085..921897	+	270	78188626	-	Cag_0648	-	polysaccharide export periplasmic protein
643	 36.76	-1	921961..924381	+	806	78188627	-	Cag_0649	-	hypothetical protein
644	 36.81	-1	924397..925116	+	239	78188628	-	Cag_0650	-	exopolysaccharide biosynthesis protein
645	 41.77	0	925165..926136	+	323	78188629	-	Cag_0651	-	GDP-L-fucose synthetase
646	 43.97	0	926145..927347	+	400	78188630	-	Cag_0652	-	GDP-mannose 4,6-dehydratase
647	 30.12	-2	928258..928599	+	113	78188631	-	Cag_0653	-	transcriptional modulator of MazE/toxin, MazF
648	 37.00	-1	929060..929359	+	99	78188632	-	Cag_0654	-	hypothetical protein
649	 31.25	-2	929436..929675	+	79	78188633	-	Cag_0655	-	hypothetical protein
650	 28.08	-2	929659..930039	+	126	78188634	-	Cag_0656	-	nucleic acid binding protein
651	 33.85	-1	930370..931527	+	385	78188635	-	Cag_0657	-	putative transcriptional regulator
652	 41.02	0	931743..932978	-	411	78188636	-	Cag_0658	-	transposase
653	 38.46	-1	933468..933740	+	90	78188637	-	Cag_0659	-	hypothetical protein
654	 37.69	-1	933737..934126	+	129	78188638	-	Cag_0660	-	hypothetical protein
655	 37.31	-1	934166..934366	+	66	78188639	-	Cag_0661	-	hypothetical protein
656	 41.24	0	934842..935195	+	117	78188640	-	Cag_0662	-	hypothetical protein
657	 29.21	-2	935574..935888	+	104	78188641	-	Cag_0663	-	hypothetical protein
658	 34.89	-1	936305..937204	+	299	78188642	-	Cag_0664	-	putative transcriptional regulator
659	 34.35	-1	937448..938728	+	426	78188643	-	Cag_0665	-	polysaccharide biosynthesis protein
660	 27.49	-2	938721..939422	+	233	78188644	-	Cag_0666	-	hypothetical protein
661	 28.60	-2	939419..941173	+	584	78188645	-	Cag_0667	-	hypothetical protein
662	 30.25	-2	941170..942303	+	377	78188646	-	Cag_0668	-	poly-gamma-glutamate biosynthesis protein
663	 35.45	-1	942305..943201	+	298	78188647	-	Cag_0669	-	sugar transferase
664	 33.45	-2	943210..944031	+	273	78188648	-	Cag_0670	-	hypothetical protein
665	 36.89	-1	944021..945004	+	327	78188649	-	Cag_0671	-	UDP-glucose 4-epimerase
666	 38.95	0	945055..946158	+	367	78188650	-	Cag_0672	-	pyridoxal phosphate-dependent enzyme
667	 33.13	-2	946158..947141	+	327	78188651	-	Cag_0673	-	putative glycosyltransferase
668	 28.05	-2	947286..948251	+	321	78188652	-	Cag_0674	-	hypothetical protein
669	 28.32	-2	948251..948988	+	245	78188653	-	Cag_0675	-	putative glycosyl transferase
670	 32.17	-2	948975..949832	+	285	78188654	-	Cag_0676	-	teichuronic acid biosynthesis
671	 40.09	0	950877..951098	+	73	78188655	-	Cag_0678	-	hypothetical protein
672	 38.10	-1	951102..951521	+	139	78188656	-	Cag_0679	-	hypothetical protein
673	 36.67	-1	951915..952274	+	119	78188657	-	Cag_0680	-	hypothetical protein
674	 39.06	0	952261..952644	+	127	78188658	-	Cag_0681	-	hypothetical protein
675	 50.65	+1	952670..953818	-	382	78188659	-	Cag_0682	-	transposase
676	 44.78	0	954542..955039	-	165	78188660	-	Cag_0683	-	hypothetical protein
677	 38.89	0	955586..955783	+	65	78188661	-	Cag_0684	-	hypothetical protein
678	 35.31	-1	955774..956076	+	100	78188662	-	Cag_0685	-	hypothetical protein
679	 42.39	0	956189..957127	-	312	78188663	-	Cag_0686	-	hypothetical protein
680	 49.41	0	958798..959736	-	312	78188664	-	Cag_0688	-	MoaA/NifB/PqqE family protein
681	 46.70	0	959742..961088	-	448	78188665	-	Cag_0689	-	PucC protein
682	 42.93	0	961350..963047	-	565	78188666	-	Cag_0690	-	hypothetical protein
683	 42.76	0	963044..964783	-	579	78188667	-	Cag_0691	-	hypothetical protein
684	 47.09	0	964915..965568	-	217	78188668	-	Cag_0692	-	hypothetical protein
685	 48.62	0	965701..966426	+	241	78188669	-	Cag_0693	-	sepiapterin reductase
686	 45.75	0	966817..967275	+	152	78188670	-	Cag_0694	-	hypothetical protein
687	 48.17	0	967300..968580	+	426	78188671	-	Cag_0695	-	seryl-tRNA synthetase
44.16	MEAN

5.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.