IslandPathversion 1.0

IslandPath Analysis: Chlorobium chlorochromatii CaD3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.16 STD DEV: 5.32
Chlorobium chlorochromatii CaD3, complete genome - 1..2572079
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
395	 46.05	0	465941..466939	-	332	78188379	-	Cag_0401	-	2-desacetyl-2-hydroxyethyl bacteriochlorophyllide
396	 41.56	0	467024..467497	-	157	78188380	-	Cag_0402	-	2-vinyl bacteriochlorophyllide hydratase
397	 42.02	0	468043..469044	+	333	78188381	-	Cag_0403	-	hypothetical protein
398	 49.62	+1	469051..470739	-	562	78188382	-	Cag_0404	-	peptide ABC transporter, periplasmic peptide-binding protein, putative
399	 42.25	0	471075..472274	-	399	78188383	-	Cag_0405	-	hypothetical protein
400	 47.60	0	472535..479083	-	2182	78188384	-	Cag_0406	-	alkaline phosphatase
401	 48.47	0	479264..479752	+	162	78188385	-	Cag_0407	-	protein tyrosine phosphatase
402	 40.90	0	479958..480935	-	325	78188386	-	Cag_0408	-	sodium/bile acid symporter family protein
403	 47.00	0	481339..482655	+	438	78188387	-	Cag_0409	-	phosphoserine phosphatase SerB
404	 50.78	+1	482856..483302	+	148	78188388	-	Cag_0410	-	hypothetical protein
405	 48.23	0	483373..484419	+	348	78188389	-	Cag_0411	-	AraC family transcriptional regulator
406	 51.12	+1	484595..485443	+	282	78188390	-	Cag_0412	-	putative molybdenum utilization protein ModD
407	 39.07	0	485464..486213	+	249	78188391	-	Cag_0413	-	molybdenum ABC transporter periplasmic-binding protein
408	 42.07	0	486215..486901	+	228	78188392	-	Cag_0414	-	molybdate ABC transporter permease
409	 39.02	0	486898..487953	+	351	78188393	-	Cag_0415	-	molybdate ABC transporter ATP-binding protein
410	 48.01	0	487980..488606	-	208	78188394	-	Cag_0416	-	endonuclease III/Nth
411	 38.43	-1	488614..489123	-	169	78188395	-	Cag_0417	-	NusB antitermination factor
412	 49.35	0	489147..489839	-	230	78188396	-	Cag_0418	-	HAD superfamily hydrolase
413	 50.27	+1	489846..493418	-	1190	78188397	-	Cag_0419	-	chromosome segregation protein SMC
414	 51.71	+1	493489..494364	-	291	78188398	-	Cag_0420	-	dihydropteroate synthase
415	 44.99	0	494541..494969	-	142	78188399	-	Cag_0421	-	6-pyruvoyl tetrahydrobiopterin synthase, putative
416	 49.97	+1	495126..496898	-	590	78188400	-	Cag_0422	-	Para-aminobenzoate synthase, component I
417	 46.99	0	497006..498565	-	519	78188401	-	Cag_0423	-	exopolyphosphatase, putative
418	 50.74	+1	498781..500004	-	407	78188402	-	Cag_0424	-	drug:proton antiporter
419	 45.31	0	500194..500577	+	127	78188403	-	Cag_0425	-	ArsR family transcriptional regulator
420	 42.31	0	500926..501159	+	77	78188404	-	Cag_0426	-	hypothetical protein
421	 39.64	0	501166..501783	+	205	78188405	-	Cag_0427	-	hypothetical protein
422	 29.22	-2	501983..502225	+	80	78188406	-	Cag_0428	-	transcriptional regulator/antitoxin, MazE
423	 33.62	-1	502212..502562	+	116	78188407	-	Cag_0429	-	transcriptional modulator of MazE/toxin, MazF
424	 47.81	0	502684..503802	-	372	78188408	-	Cag_0430	-	hypothetical protein
425	 49.02	0	503840..505930	-	696	78188409	-	Cag_0431	-	polyphosphate kinase
426	 37.80	-1	505946..506617	-	223	78188410	-	Cag_0432	-	hypothetical protein
427	 45.24	0	506964..507509	+	181	78188411	-	Cag_0433	-	pyruvoyl-dependent arginine decarboxylase
428	 33.72	-1	508548..509327	-	259	78188412	-	Cag_0434	-	hypothetical protein
429	 47.77	0	509675..510436	+	253	78188413	-	Cag_0435	-	two component transcriptional regulator
430	 46.59	0	510426..512213	+	595	78188414	-	Cag_0436	-	multi-sensor signal transduction histidine kinase
431	 49.02	0	512251..513582	-	443	78188415	-	Cag_0437	-	hypothetical protein
432	 43.36	0	513745..514203	+	152	78188416	-	Cag_0438	-	hypothetical protein
433	 48.17	0	514411..515913	-	500	78188417	-	Cag_0439	-	periplasmic sensor signal transduction histidine kinase
434	 46.02	0	515910..516587	-	225	78188418	-	Cag_0440	-	two component transcriptional regulator
435	 45.76	0	516708..517238	-	176	78188419	-	Cag_0441	-	hypothetical protein
436	 48.15	0	517332..518087	-	251	78188420	-	Cag_0442	-	histidine biosynthesis protein HisF
437	 40.96	0	518819..521074	+	751	78188421	hppA	Cag_0443	-	membrane-bound proton-translocating pyrophosphatase
438	 40.66	0	521321..521866	+	181	78188422	-	Cag_0444	-	inorganic pyrophosphatase
439	 47.99	0	522293..523588	+	431	78188423	-	Cag_0445	-	hypothetical protein
440	 41.20	0	523786..524052	+	88	78188424	-	Cag_0446	-	hypothetical protein
441	 49.15	0	524280..525518	-	412	78188425	-	Cag_0447	-	hypothetical protein
442	 48.18	0	525533..526738	-	401	78188426	-	Cag_0448	-	DegT/DnrJ/EryC1/StrS family protein
443	 50.24	+1	526796..528280	+	494	78188427	-	Cag_0449	-	L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
444	 29.82	-2	528313..528711	+	132	78188428	-	Cag_0450	-	hypothetical protein
445	 49.42	0	529030..530403	+	457	78188429	-	Cag_0451	-	tryptophan synthase subunit beta
446	 30.92	-2	530507..531292	-	261	78188430	-	Cag_0452	-	fic family protein
447	 47.32	0	531318..533162	-	614	78188431	-	Cag_0453	-	ATPase
448	 50.36	+1	533159..534562	-	467	78188432	-	Cag_0454	-	phosphoglucomutase/phosphomannomutase family protein
449	 39.22	0	534879..535082	+	67	78188433	-	Cag_0455	-	hypothetical protein
450	 43.97	0	535338..535619	+	93	78188434	rpsT	Cag_0456	-	30S ribosomal protein S20
451	 47.48	0	535712..536326	+	204	78188435	-	Cag_0457	-	DNA recombination protein, RuvA
452	 48.72	0	536332..537618	+	428	78188436	-	Cag_0458	-	folylpolyglutamate synthetase
453	 45.19	0	537944..539233	+	429	78188437	rho	Cag_0459	-	transcription termination factor Rho
454	 50.40	+1	539838..540581	+	247	78188438	-	Cag_0460	-	electron transfer flavoprotein beta-subunit (beta-ETF)
455	 49.19	0	540693..541682	+	329	78188439	-	Cag_0461	-	electron transfer flavoprotein alpha-subunit
456	 44.83	0	541825..542433	+	202	78188440	-	Cag_0462	-	hypothetical protein
457	 44.78	0	542549..545125	-	858	78188441	-	Cag_0463	-	surface antigen family protein
458	 46.27	0	545212..546069	-	285	78188442	-	Cag_0464	-	di-trans-poly-cis-decaprenylcistransferase
459	 48.21	0	546260..547684	+	474	78188443	-	Cag_0465	-	glutamyl-tRNA(Gln) amidotransferase A subunit
460	 47.78	0	547735..548634	+	299	78188444	-	Cag_0466	-	succinyl-CoA ligase, alpha subunit
461	 49.95	+1	548723..549709	-	328	78188445	-	Cag_0467	-	KpsF/GutQ
462	 39.04	0	549819..550151	+	110	78188446	-	Cag_0468	-	hypothetical protein
463	 49.02	0	550167..551702	+	511	78188447	-	Cag_0469	-	polysaccharide biosynthesis protein
464	 46.20	0	551719..552231	-	170	78188448	-	Cag_0470	-	hypothetical protein
465	 47.35	0	552329..552799	-	156	78188449	-	Cag_0471	-	hypothetical protein
466	 45.28	0	552867..553226	-	119	78188450	-	Cag_0472	-	hypothetical protein
467	 45.10	0	553311..553871	-	186	78188451	-	Cag_0473	-	sigma-24 (FecI-like)
468	 43.31	0	554056..555438	-	460	78188452	-	Cag_0474	-	phosphoglucomutase/phosphomannomutase family protein
469	 46.89	0	555642..556784	+	380	78188453	-	Cag_0475	-	glycosyl transferase family protein
470	 42.13	0	556816..557190	+	124	78188454	-	Cag_0476	-	hypothetical protein
471	 50.00	+1	557120..558277	-	385	78188455	-	Cag_0477	-	D-alanyl-D-alanine carboxypeptidease, putative
472	 43.69	0	558290..559168	-	292	78188456	-	Cag_0478	-	VpsC protein
473	 43.95	0	559192..559926	-	244	78188457	-	Cag_0479	-	ATPase
474	 46.92	0	559930..560724	-	264	78188458	-	Cag_0480	-	putative ABC transport system permease protein
475	 42.97	0	560773..561633	-	286	78188459	-	Cag_0481	-	phosphoesterase PHP-like
476	 47.94	0	561719..562567	-	282	78188460	-	Cag_0482	-	bacitracin resistance protein BacA
477	 50.00	+1	562564..563259	-	231	78188461	-	Cag_0483	-	Ham1-like protein
478	 49.58	+1	563334..564041	-	235	78188462	-	Cag_0484	-	pyridoxal phosphate biosynthetic protein PdxJ
479	 45.81	0	564249..565466	+	405	78188463	-	Cag_0485	-	hypothetical protein
480	 42.82	0	565456..568353	+	965	78188464	-	Cag_0486	-	TPR repeat-containing protein
481	 51.22	+1	568475..569419	-	314	78188465	-	Cag_0487	-	methionyl-tRNA formyltransferase
482	 46.50	0	569511..570110	-	199	78188466	-	Cag_0488	-	formylmethionine deformylase
483	 47.86	0	570869..572362	+	497	78188467	-	Cag_0489	-	IMP dehydrogenase
484	 45.16	0	572581..574398	+	605	78188468	-	Cag_0490	-	GTP-binding protein LepA
485	 45.12	0	574568..575407	+	279	78188469	-	Cag_0491	-	peptidase S26A, signal peptidase I
486	 46.92	0	575556..575945	-	129	78188470	-	Cag_0492	-	hypothetical protein
487	 46.10	0	576139..577626	+	495	78188471	-	Cag_0493	-	anthranilate synthase component I
488	 47.60	0	577652..579172	+	506	78188472	-	Cag_0494	-	peptidase S1C, Do
489	 42.03	0	579482..579964	+	160	78188473	-	Cag_0495	-	GreA/GreB family elongation factor
490	 40.89	0	579979..580203	+	74	78188474	-	Cag_0496	-	hypothetical protein
491	 47.69	0	580210..580968	+	252	78188475	-	Cag_0497	-	triosephosphate isomerase
492	 40.26	0	581090..581854	-	254	78188476	-	Cag_0498	-	phosphate ABC transporter permease
493	 44.92	0	581888..583078	-	396	78188477	-	Cag_0499	-	phosphate ABC transporter permease
494	 44.82	0	583071..584315	-	414	78188478	-	Cag_0500	-	phosphate ABC transporter permease
44.16	MEAN

5.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.