IslandPathversion 1.0

IslandPath Analysis: Chlorobium chlorochromatii CaD3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.16 STD DEV: 5.32
Chlorobium chlorochromatii CaD3, complete genome - 1..2572079
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1686	 46.11	0	2226496..2227176	-	226	78189670	infC	Cag_1714	-	translation initiation factor IF-3
1687	 47.87	0	2227260..2229233	-	657	78189671	-	Cag_1715	-	threonyl-tRNA synthetase, class IIA
1688	 50.32	+1	2229642..2231048	-	468	78189672	-	Cag_1716	-	chlorophyllide reductase subunit Z
1689	 34.93	-1	2231122..2232060	-	312	78189673	-	Cag_1717	-	hypothetical protein
1690	 49.91	+1	2232123..2233214	-	363	78189674	-	Cag_1718	-	O-succinylbenzoate-CoA synthase
1691	 50.49	+1	2233214..2234035	-	273	78189675	-	Cag_1719	-	naphthoate synthase
1692	 49.62	+1	2234049..2234846	-	265	78189676	-	Cag_1720	-	thioesterase, menaquinone synthesis protein
1693	 32.08	-2	2234849..2236366	-	505	78189677	-	Cag_1721	-	hypothetical protein
1694	 42.67	0	2236557..2239598	-	1013	78189678	-	Cag_1722	-	hypothetical protein
1695	 45.45	0	2239638..2240528	-	296	78189679	-	Cag_1723	-	hypothetical protein
1696	 40.48	0	2240643..2240894	-	83	78189680	-	Cag_1724	-	hypothetical protein
1697	 46.38	0	2241262..2243124	+	620	78189681	-	Cag_1725	-	Kup system potassium uptake protein
1698	 42.84	0	2243131..2243898	+	255	78189682	-	Cag_1726	-	hypothetical protein
1699	 42.33	0	2244057..2244356	+	99	78189683	-	Cag_1727	-	hypothetical protein
1700	 49.23	0	2244347..2245516	-	389	78189684	-	Cag_1728	-	pentapeptide repeat-containing protein
1701	 44.21	0	2245586..2246284	+	232	78189685	-	Cag_1729	-	hypothetical protein
1702	 45.52	0	2246346..2249915	-	1189	78189686	-	Cag_1730	-	pyruvate:ferredoxin (flavodoxin) oxidoreductase
1703	 48.59	0	2250436..2251182	+	248	78189687	-	Cag_1731	-	RNA methyltransferase TrmH, group 3
1704	 46.03	0	2251324..2251701	+	125	78189688	-	Cag_1732	-	glycine cleavage H-protein
1705	 48.36	0	2251705..2253042	+	445	78189689	-	Cag_1733	-	glycine dehydrogenase subunit 1
1706	 45.90	0	2253168..2254058	-	296	78189690	dapA	Cag_1734	-	dihydrodipicolinate synthase
1707	 50.63	+1	2254245..2255042	-	265	78189691	-	Cag_1735	-	SpoU rRNA methylase family protein
1708	 46.12	0	2255039..2255812	-	257	78189692	-	Cag_1736	-	hypothetical protein
1709	 45.62	0	2256164..2257660	+	498	78189693	-	Cag_1737	-	hypothetical protein
1710	 33.75	-1	2258334..2258573	-	79	78189694	-	Cag_1738	-	hypothetical protein
1711	 46.83	0	2258647..2259024	-	125	78189695	-	Cag_1739	-	hypothetical protein
1712	 47.14	0	2259095..2260195	-	366	78189696	-	Cag_1740	-	aminopeptidase P
1713	 46.97	0	2260325..2261380	+	351	78189697	-	Cag_1741	-	anthranilate phosphoribosyltransferase
1714	 45.73	0	2261630..2262460	+	276	78189698	-	Cag_1742	-	bacteriochlorophyll/chlorophyll a synthase
1715	 41.55	0	2262568..2262786	+	72	78189699	rpmB	Cag_1743	-	50S ribosomal protein L28
1716	 45.35	0	2262878..2263318	+	146	78189700	rnhA	Cag_1744	-	ribonuclease H
1717	 44.44	0	2263366..2264364	+	332	78189701	-	Cag_1745	-	hypothetical protein
1718	 47.14	0	2264365..2265429	-	354	78189702	-	Cag_1746	-	MesJ protein
1719	 44.91	0	2265522..2266160	+	212	78189703	-	Cag_1747	-	phosphatidylserine decarboxylase
1720	 38.57	-1	2266354..2266563	+	69	78189704	-	Cag_1748	-	twin-arginine translocation protein TatA/E
1721	 46.72	0	2266628..2268352	+	574	78189705	-	Cag_1749	-	DNA repair protein RecN
1722	 47.15	0	2268369..2268983	+	204	78189706	-	Cag_1750	-	hypothetical protein
1723	 39.27	0	2269191..2269628	+	145	78189707	-	Cag_1751	-	prevent-host-death protein
1724	 35.58	-1	2269625..2269936	+	103	78189708	-	Cag_1752	-	hypothetical protein
1725	 43.44	0	2270051..2270812	-	253	78189709	-	Cag_1753	-	hypothetical protein
1726	 50.87	+1	2270961..2272403	+	480	78189710	-	Cag_1754	-	aldehyde dehydrogenase
1727	 45.65	0	2272562..2273113	+	183	78189711	-	Cag_1755	-	outer surface protein, putative
1728	 48.15	0	2273499..2273957	+	152	78189712	-	Cag_1756	-	hypothetical protein
1729	 46.89	0	2273996..2275552	-	518	78189713	-	Cag_1757	-	Mg chelatase-related protein
1730	 41.84	0	2275984..2276571	+	195	78189714	-	Cag_1758	-	photosystem P840 reaction center cytochrome c-551
1731	 40.17	0	2276744..2277094	-	116	78189715	-	Cag_1759	-	7-cyano-7-deazaguanine reductase
1732	 45.51	0	2277322..2278011	+	229	78189716	-	Cag_1760	-	hypothetical protein
1733	 49.21	0	2278008..2278895	+	295	78189717	-	Cag_1761	-	hypothetical protein
1734	 44.74	0	2278902..2279918	+	338	78189718	-	Cag_1762	-	phage/XerD family site-specific recombinase
1735	 39.25	0	2280006..2280326	+	106	78189719	-	Cag_1763	-	hypothetical protein
1736	 43.61	0	2280441..2281442	+	333	78189720	-	Cag_1764	-	HPr kinase/phosphorylase
1737	 47.68	0	2281429..2283219	+	596	78189721	-	Cag_1765	-	peptide ABC transporter, periplasmic peptide-binding protein
1738	 47.10	0	2283235..2284200	+	321	78189722	-	Cag_1766	-	peptide ABC transporter, permease protein
1739	 49.67	+1	2284284..2285342	+	352	78189723	ruvB	Cag_1767	-	Holliday junction DNA helicase B
1740	 50.10	+1	2285395..2286873	+	492	78189724	-	Cag_1768	-	TPR repeat-containing protein
1741	 28.87	-2	2286893..2287318	-	141	78189725	-	Cag_1769	-	hypothetical protein
1742	 32.88	-2	2287305..2287526	-	73	78189726	-	Cag_1770	-	hypothetical protein
1743	 42.33	0	2287575..2288330	-	251	78189727	-	Cag_1771	-	hypothetical protein
1744	 31.13	-2	2288369..2290090	-	573	78189728	-	Cag_1772	-	hypothetical protein
1745	 49.81	+1	2290172..2290942	-	256	78189729	-	Cag_1773	-	hypothetical protein
1746	 46.53	0	2290942..2291547	-	201	78189730	-	Cag_1774	-	LemA family protein
1747	 44.79	0	2291651..2293858	-	735	78189731	-	Cag_1775	-	metal dependent phosphohydrolase
1748	 35.82	-1	2294482..2294682	+	66	78189732	-	Cag_1776	-	hypothetical protein
1749	 32.87	-2	2294862..2295293	-	143	78189733	-	Cag_1777	-	PilT domain-containing protein
1750	 49.15	0	2295628..2296803	-	391	78189734	-	Cag_1778	-	DNA polymerase III, delta subunit, putative
1751	 47.04	0	2296926..2297837	-	303	78189735	-	Cag_1779	-	branched-chain amino acid aminotransferase
1752	 45.36	0	2297911..2299116	-	401	78189736	-	Cag_1780	-	phosphofructokinase
1753	 46.27	0	2299387..2300661	+	424	78189737	-	Cag_1781	-	lipoprotein releasing system
1754	 47.47	0	2300836..2301309	-	157	78189738	-	Cag_1782	-	MECDP-synthase
1755	 48.20	0	2301364..2302305	-	313	78189739	-	Cag_1783	-	dihydroorotate dehydrogenase 1
1756	 45.28	0	2302392..2304509	-	705	78189740	-	Cag_1784	-	Alpha-glucan phosphorylase
1757	 45.76	0	2304773..2305633	+	286	78189741	-	Cag_1785	-	hypothetical protein
1758	 46.24	0	2305915..2306379	-	154	78189742	-	Cag_1786	-	hypothetical protein
1759	 46.30	0	2306406..2308271	-	621	78189743	-	Cag_1787	-	carbamoyl-phosphate synthase, large subunit
1760	 47.10	0	2308541..2309782	+	413	78189744	-	Cag_1788	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1761	 48.75	0	2309834..2311150	+	438	78189745	-	Cag_1789	-	serine hydroxymethyltransferase
1762	 48.88	0	2311272..2312963	-	563	78189746	-	Cag_1790	-	hypothetical protein
1763	 50.56	+1	2312964..2313677	-	237	78189747	-	Cag_1791	-	hypothetical protein
1764	 43.45	0	2313821..2314621	-	266	78189748	-	Cag_1792	-	hypothetical protein
1765	 50.76	+1	2314664..2315449	+	261	78189749	-	Cag_1793	-	6-phosphogluconolactonase
1766	 45.61	0	2315524..2315751	-	75	78189750	-	Cag_1794	-	hypothetical protein
1767	 40.63	0	2315792..2316106	-	104	78189751	-	Cag_1795	-	hypothetical protein
1768	 46.34	0	2316188..2319331	+	1047	78189752	-	Cag_1796	-	ankyrin
1769	 37.04	-1	2319411..2319842	-	143	78189753	-	Cag_1797	-	hypothetical protein
1770	 40.44	0	2319848..2320255	-	135	78189754	-	Cag_1798	-	XRE family transcriptional regulator
1771	 41.20	0	2320259..2320741	-	160	78189755	-	Cag_1799	-	hypothetical protein
1772	 46.58	0	2320903..2322540	-	545	78189756	-	Cag_1800	-	electron transfer flavoprotein-ubiquinone oxidoreductase
1773	 46.93	0	2322562..2323944	-	460	78189757	-	Cag_1801	-	divalent cation transporter
1774	 49.18	0	2324131..2324742	-	203	78189758	-	Cag_1802	-	methylpurine-DNA glycosylase (MPG)
1775	 45.36	0	2324899..2325696	+	265	78189759	-	Cag_1803	-	ParaA family ATPase
1776	 48.14	0	2325721..2326632	+	303	78189760	-	Cag_1804	-	ParB-like partition protein
1777	 50.40	+1	2326763..2327512	+	249	78189761	-	Cag_1805	-	dihydrodipicolinate reductase
1778	 46.67	0	2327595..2328719	-	374	78189762	-	Cag_1806	-	putative oxygen-independent coproporphyrinogen III oxidase
1779	 45.44	0	2328750..2329352	-	200	78189763	-	Cag_1807	-	histidinol-phosphate phosphatase
1780	 43.54	0	2329365..2330834	-	489	78189764	-	Cag_1808	-	glycogen/starch synthase, ADP-glucose type
1781	 48.72	0	2330964..2332094	+	376	78189765	-	Cag_1809	-	hypothetical protein
1782	 43.46	0	2332111..2332683	+	190	78189766	-	Cag_1810	-	bacteriochlorophyll 4-vinyl reductase
1783	 39.14	0	2332987..2333313	-	108	78189767	-	Cag_1811	-	XRE family transcriptional regulator
1784	 35.26	-1	2333303..2333614	-	103	78189768	-	Cag_1812	-	hypothetical protein
1785	 45.97	0	2333875..2334705	-	276	78189769	chlL	Cag_1813	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
44.16	MEAN

5.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.