IslandPathversion 1.0

IslandPath Analysis: Chlorobium chlorochromatii CaD3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.16 STD DEV: 5.32
Chlorobium chlorochromatii CaD3, complete genome - 1..2572079
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1438	 46.24	0	1926296..1926667	-	123	78189422	-	Cag_1461	-	ribosome-binding factor A
1439	 47.44	0	1926690..1929758	-	1022	78189423	infB	Cag_1462	-	translation initiation factor IF-2
1440	 40.66	0	1929886..1931469	-	527	78189424	nusA	Cag_1463	-	transcription elongation factor NusA
1441	 47.59	0	1931513..1932052	-	179	78189425	-	Cag_1464	-	hypothetical protein
1442	 39.33	0	1932363..1932629	-	88	78189426	-	Cag_1465	-	hypothetical protein
1443	 45.00	0	1932630..1932869	-	79	78189427	-	Cag_1466	-	hypothetical protein
1444	 48.28	0	1932884..1934161	-	425	78189428	hisS	Cag_1467	-	histidyl-tRNA synthetase
1445	 46.92	0	1934171..1934641	-	156	78189429	-	Cag_1468	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
1446	 32.93	-2	1934892..1935875	-	327	78189430	-	Cag_1469	-	death-on-curing protein
1447	 45.33	0	1935951..1936775	-	274	78189431	-	Cag_1470	-	phosphatidate cytidylyltransferase
1448	 47.86	0	1936812..1937747	-	311	78189432	-	Cag_1471	-	hypothetical protein
1449	 37.27	-1	1937960..1939051	+	363	78189433	-	Cag_1472	-	glycosyl transferase
1450	 37.93	-1	1939060..1940211	+	383	78189434	-	Cag_1473	-	hypothetical protein
1451	 35.82	-1	1940244..1941287	+	347	78189435	-	Cag_1474	-	heptosyltransferase
1452	 32.12	-2	1941332..1942405	+	357	78189436	-	Cag_1475	-	glycosyl transferase
1453	 35.45	-1	1942462..1943502	+	346	78189437	-	Cag_1476	-	glycosyl transferase
1454	 36.53	-1	1943519..1944520	-	333	78189438	-	Cag_1477	-	glycosyl transferase
1455	 29.55	-2	1944524..1945501	-	325	78189439	-	Cag_1478	-	glycosyl transferase
1456	 34.85	-1	1945633..1946556	-	307	78189440	-	Cag_1479	-	cell wall biosynthesis glycosyltransferase-like protein
1457	 39.36	0	1946569..1947132	-	187	78189441	-	Cag_1480	-	acetyltransferase
1458	 38.84	0	1947129..1950488	-	1119	78189442	-	Cag_1481	-	glycosyltransferase-like protein
1459	 35.44	-1	1950687..1952585	-	632	78189443	-	Cag_1482	-	ATPase
1460	 40.91	0	1952625..1953548	-	307	78189444	-	Cag_1483	-	acyltransferase
1461	 45.49	0	1953672..1956263	-	863	78189445	-	Cag_1484	-	ATPase
1462	 46.92	0	1956525..1956995	+	156	78189446	-	Cag_1485	-	hypothetical protein
1463	 48.73	0	1957117..1958538	-	473	78189447	-	Cag_1486	-	toluene transport protein, putative
1464	 39.10	0	1958779..1959090	-	103	78189448	-	Cag_1487	-	XRE family plasmid maintenance system antidote protein
1465	 37.59	-1	1959092..1959373	-	93	78189449	-	Cag_1488	-	hypothetical protein
1466	 44.92	0	1959630..1960337	+	235	78189450	-	Cag_1489	-	hypothetical protein
1467	 47.07	0	1960399..1962021	-	540	162319771	-	Cag_1490	-	hydroxylamine reductase
1468	 50.12	+1	1962389..1962793	-	134	78189452	-	Cag_1491	-	TPR repeat-containing protein
1469	 48.52	0	1963025..1963900	-	291	78189453	-	Cag_1492	-	iron-sulfur cluster-binding protein
1470	 45.14	0	1963955..1964386	-	143	78189454	-	Cag_1493	-	hypothetical protein
1471	 38.96	0	1964776..1965006	+	76	78189455	-	Cag_1494	-	hypothetical protein
1472	 46.67	0	1965023..1965367	+	114	78189456	-	Cag_1495	-	hypothetical protein
1473	 47.44	0	1965405..1965893	-	162	78189457	-	Cag_1496	-	nuclear protein SET
1474	 44.83	0	1966060..1967016	+	318	78189458	-	Cag_1497	-	chlorobiumquinone synthase BchC related protein
1475	 49.94	+1	1967051..1968592	+	513	78189459	-	Cag_1498	-	ATPase
1476	 49.61	+1	1968617..1969654	+	345	78189460	-	Cag_1499	-	membrane protein
1477	 43.02	0	1969797..1970054	+	85	78189461	-	Cag_1500	-	hypothetical protein
1478	 39.11	0	1970106..1970330	+	74	78189462	-	Cag_1501	-	hypothetical protein
1479	 47.31	0	1970612..1971112	+	166	78189463	-	Cag_1502	-	hypothetical protein
1480	 43.18	0	1971117..1971380	+	87	78189464	-	Cag_1503	-	hypothetical protein
1481	 45.41	0	1971392..1975333	+	1313	78189465	-	Cag_1504	-	TPR repeat-containing protein
1482	 38.36	-1	1975407..1975625	+	72	78189466	-	Cag_1505	-	hypothetical protein
1483	 35.40	-1	1975615..1975953	+	112	78189467	-	Cag_1506	-	hypothetical protein
1484	 40.29	0	1976160..1977395	+	411	78189468	-	Cag_1507	-	transposase
1485	 45.64	0	1977515..1977709	+	64	78189469	-	Cag_1508	-	hypothetical protein
1486	 44.24	0	1977873..1978835	-	320	78189470	-	Cag_1509	-	hypothetical protein
1487	 34.75	-1	1980291..1980572	+	93	78189471	-	Cag_1511	-	hypothetical protein
1488	 49.95	+1	1980792..1986791	-	1999	78189472	-	Cag_1512	-	filamentous haemagglutinin-like
1489	 43.35	0	1987113..1987781	+	222	78189473	radC	Cag_1513	-	DNA repair protein RadC
1490	 45.03	0	1987848..1988591	-	247	78189474	-	Cag_1514	-	uroporphyrinogen-III synthase
1491	 46.18	0	1988591..1989532	-	313	78189475	-	Cag_1515	-	porphobilinogen deaminase
1492	 43.87	0	1989559..1990839	-	426	78189476	hemA	Cag_1516	-	glutamyl-tRNA reductase
1493	 41.97	0	1991123..1991956	-	277	78189477	-	Cag_1517	-	HemX protein, putative
1494	 46.31	0	1992193..1994019	+	608	78189478	-	Cag_1518	-	GTP-binding protein TypA
1495	 52.75	+1	1994220..1995419	-	399	78189479	-	Cag_1519	-	chorismate synthase
1496	 48.02	0	1995864..1996850	-	328	78189480	-	Cag_1520	-	delta-aminolevulinic acid dehydratase
1497	 47.47	0	1996949..1998490	-	513	78189481	-	Cag_1521	-	methylmalonyl-CoA decarboxylase, alpha subunit
1498	 48.98	0	1998757..1999542	+	261	78189482	-	Cag_1522	-	histidinol-phosphate phosphatase, putative, inositol monophosphatase
1499	 43.86	0	1999556..2002366	+	936	78189483	-	Cag_1523	-	DEAD/DEAH box helicase-like
1500	 43.75	0	2002387..2003250	+	287	78189484	dinD	Cag_1524	-	DNA-damage-inducible protein D
1501	 47.24	0	2003262..2005001	+	579	78189485	-	Cag_1525	-	type I restriction modification enzyme methylase subunit
1502	 38.85	0	2004998..2006158	+	386	78189486	-	Cag_1526	-	restriction endonuclease S subunits-like
1503	 42.17	0	2006216..2006815	+	199	78189487	-	Cag_1527	-	hypothetical protein
1504	 47.17	0	2006935..2007093	+	52	78189488	-	Cag_1528	-	restriction modification system, type I
1505	 37.31	-1	2007135..2007713	+	192	78189489	-	Cag_1529	-	hypothetical protein
1506	 41.83	0	2007833..2007985	+	50	78189490	-	Cag_1530	-	hypothetical protein
1507	 47.46	0	2008109..2008462	-	117	78189491	secG	Cag_1531	-	preprotein translocase subunit SecG
1508	 44.75	0	2008577..2008795	+	72	78189492	-	Cag_1532	-	hypothetical protein
1509	 47.21	0	2008820..2009410	+	196	78189493	hisB	Cag_1533	-	imidazoleglycerol-phosphate dehydratase
1510	 42.88	0	2009481..2010182	+	233	78189494	-	Cag_1534	-	hypothetical protein
1511	 49.15	0	2010314..2010547	-	77	78189495	-	Cag_1535	-	hypothetical protein
1512	 35.77	-1	2011144..2011512	-	122	78189496	-	Cag_1536	-	hypothetical protein
1513	 39.81	0	2012462..2013850	+	462	78189497	-	Cag_1537	-	Elongator protein 3/MiaB/NifB
1514	 41.89	0	2013889..2014905	+	338	78189498	-	Cag_1538	-	bacteriochlorophyll c synthase
1515	 38.83	-1	2015173..2018994	+	1273	78189499	-	Cag_1539	-	PAS/PAC sensor signal transduction histidine kinase
1516	 37.68	-1	2019068..2019850	+	260	78189500	-	Cag_1540	-	two component transcriptional regulator
1517	 46.22	0	2020049..2021623	-	524	78189501	-	Cag_1541	-	phosphodiesterase
1518	 46.21	0	2022062..2022325	-	87	78189502	-	Cag_1542	-	hypothetical protein
1519	 47.39	0	2022343..2022648	-	101	78189503	-	Cag_1543	-	hypothetical protein
1520	 48.88	0	2022665..2025076	-	803	78189504	-	Cag_1544	-	phenylalanyl-tRNA synthetase, beta subunit
1521	 49.12	0	2025635..2026090	-	151	78189505	-	Cag_1545	-	NUDIX/MutT family protein
1522	 41.33	0	2026285..2027334	+	349	78189506	-	Cag_1546	-	glucose-1-phosphate thymidylyltransferase
1523	 44.69	0	2027891..2029105	+	404	78189507	-	Cag_1547	-	S-adenosylmethionine synthetase
1524	 46.54	0	2029207..2030622	+	471	78189508	-	Cag_1548	-	S-adenosyl-L-homocysteine hydrolase
1525	 48.01	0	2030874..2031527	+	217	78189509	-	Cag_1549	-	N-(5'-phosphoribosyl)-anthranilate isomerase
1526	 44.71	0	2031558..2033306	-	582	78189510	-	Cag_1550	-	glutathione-regulated potassium-efflux system protein KefC, putative
1527	 43.96	0	2033723..2033995	+	90	78189511	-	Cag_1551	-	RNA recognition motif-containing protein
1528	 44.79	0	2034112..2034399	+	95	78189512	-	Cag_1552	-	hypothetical protein
1529	 45.79	0	2034607..2036268	+	553	78189513	-	Cag_1553	-	sulphate anion transporter
1530	 47.45	0	2036526..2036780	-	84	78189514	-	Cag_1554	-	hypothetical protein
1531	 45.41	0	2036929..2037342	+	137	78189515	-	Cag_1555	-	nitrogenase-associated protein
1532	 42.95	0	2037443..2037754	+	103	78189516	-	Cag_1556	-	hypothetical protein
1533	 48.99	0	2037899..2038345	+	148	78189517	-	Cag_1557	-	hypothetical protein
1534	 44.16	0	2038659..2039609	+	316	78189518	-	Cag_1558	-	hypothetical protein
1535	 35.51	-1	2039958..2041013	-	351	78189519	-	Cag_1559	-	transposase for IS1663
1536	 46.95	0	2041236..2046752	+	1838	78189520	-	Cag_1560	-	VCBS
1537	 48.03	0	2046926..2047660	-	244	78189521	-	Cag_1561	-	zinc protease, putative
44.16	MEAN

5.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.