IslandPathversion 1.0

IslandPath Analysis: Chlorobium chlorochromatii CaD3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.16 STD DEV: 5.32
Chlorobium chlorochromatii CaD3, complete genome - 1..2572079
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1332	 45.50	0	1817780..1818601	+	273	78189316	-	Cag_1351	-	purine nucleoside phosphorylase
1333	 37.50	-1	1818881..1819384	+	167	78189317	-	Cag_1352	-	hypothetical protein
1334	 38.24	-1	1819545..1819850	+	101	78189318	-	Cag_1353	-	hypothetical protein
1335	 37.36	-1	1819847..1820293	+	148	78189319	-	Cag_1354	-	nucleic acid binding protein
1336	 45.18	0	1820661..1821791	+	376	78189320	-	Cag_1355	-	initiation factor 2B alpha/beta/delta
1337	 44.42	0	1821951..1823339	+	462	78189321	-	Cag_1356	-	cytochrome-cbb3 oxidase, subunit I
1338	 45.83	0	1823368..1824039	+	223	78189322	-	Cag_1357	-	cytochrome-c oxidase fixO chain
1339	 44.01	0	1824338..1824796	+	152	78189323	-	Cag_1358	-	cb-type cytochrome c oxidase subunit III
1340	 44.07	0	1825127..1826272	+	381	78189324	-	Cag_1359	-	polyferredoxin-like
1341	 37.04	-1	1826517..1826786	+	89	78189325	-	Cag_1360	-	hypothetical protein
1342	 41.84	0	1826797..1827078	+	93	78189326	-	Cag_1361	-	hypothetical protein
1343	 27.99	-2	1827214..1828149	+	311	78189327	-	Cag_1362	-	hypothetical protein
1344	 30.97	-2	1828351..1829787	+	478	78189328	-	Cag_1363	-	serine/threonine protein kinase
1345	 27.48	-2	1830009..1830230	+	73	78189329	-	Cag_1364	-	hypothetical protein
1346	 36.28	-1	1830859..1831299	+	146	78189330	-	Cag_1367	-	hypothetical protein
1347	 45.92	0	1831278..1831706	+	142	78189331	-	Cag_1368	-	hypothetical protein
1348	 49.98	+1	1831693..1834137	+	814	78189332	-	Cag_1369	-	heavy metal translocating P-type ATPase
1349	 45.45	0	1834134..1834298	+	54	78189333	-	Cag_1370	-	cytochrome oxidase maturation protein cbb3-type
1350	 50.88	+1	1834295..1834972	+	225	78189334	-	Cag_1371	-	hypothetical protein
1351	 37.07	-1	1835061..1835729	+	222	78189335	-	Cag_1372	-	hypothetical protein
1352	 38.92	0	1835886..1836368	+	160	78189336	-	Cag_1373	-	hypothetical protein
1353	 35.77	-1	1836346..1836591	+	81	78189337	-	Cag_1374	-	hypothetical protein
1354	 41.67	0	1836676..1837815	-	379	78189338	-	Cag_1375	-	hypothetical protein
1355	 47.10	0	1837967..1839019	-	350	78189339	-	Cag_1376	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1356	 47.56	0	1839260..1840876	+	538	78189340	-	Cag_1377	-	D-3-phosphoglycerate dehydrogenase
1357	 42.57	0	1840971..1842161	-	396	78189341	-	Cag_1378	-	anion-transporting ATPase
1358	 47.40	0	1842366..1844036	-	556	78189342	-	Cag_1379	-	peptidoglycan-binding LysM
1359	 50.00	+1	1844279..1845010	-	243	78189343	truA	Cag_1380	-	tRNA pseudouridine synthase A
1360	 48.69	0	1845111..1847096	+	661	78189344	-	Cag_1381	-	alpha-amylase family protein
1361	 44.96	0	1847114..1848025	+	303	78189345	-	Cag_1382	-	carbohydrate kinase
1362	 34.39	-1	1848546..1848830	-	94	78189346	-	Cag_1383	-	hypothetical protein
1363	 48.22	0	1848972..1850738	+	588	78189347	-	Cag_1384	-	sodium:solute symporter family protein
1364	 35.75	-1	1850748..1850954	+	68	78189348	-	Cag_1385	-	hypothetical protein
1365	 33.33	-2	1850935..1851240	+	101	78189349	-	Cag_1386	-	XRE family transcriptional regulator
1366	 31.52	-2	1851699..1853351	+	550	78189350	-	Cag_1387	-	ATP-dependent OLD family endonuclease
1367	 34.40	-1	1853550..1853831	+	93	78189351	-	Cag_1388	-	hypothetical protein
1368	 27.25	-2	1853831..1854208	+	125	78189352	-	Cag_1389	-	nucleic acid binding protein
1369	 47.11	0	1854223..1854447	+	74	78189353	-	Cag_1390	-	hypothetical protein
1370	 30.14	-2	1854511..1855293	+	260	78189354	-	Cag_1391	-	putative type II restriction enzyme
1371	 32.67	-2	1855303..1856358	+	351	78189355	-	Cag_1392	-	putative type II DNA modification enzyme (methyltransferase)
1372	 49.58	+1	1856370..1856960	+	196	78189356	-	Cag_1393	-	Maf-like protein
1373	 49.57	+1	1856960..1857895	+	311	78189357	-	Cag_1394	-	tRNA isopentenyltransferase
1374	 44.10	0	1858140..1858910	+	256	78189358	-	Cag_1395	-	anti-anti-sigma factor, putative
1375	 48.58	0	1858973..1860166	-	397	78189359	-	Cag_1396	-	hypothetical protein
1376	 37.15	-1	1860226..1860618	-	130	78189360	-	Cag_1397	-	hypothetical protein
1377	 39.54	0	1860768..1862153	-	461	78189361	-	Cag_1398	-	hypothetical protein
1378	 32.65	-2	1862226..1863533	+	435	78189362	-	Cag_1399	-	hypothetical protein
1379	 35.23	-1	1863568..1865463	-	631	78189363	-	Cag_1400	-	chloride channel, putative
1380	 33.59	-1	1865498..1866283	-	261	78189364	-	Cag_1401	-	hypothetical protein
1381	 32.70	-2	1866280..1867074	-	264	78189365	-	Cag_1402	-	DNA modification methylase-like
1382	 48.21	0	1867431..1869548	-	705	78189366	metG	Cag_1403	-	methionyl-tRNA synthetase
1383	 49.00	0	1869567..1870568	-	333	78189367	-	Cag_1404	-	hypothetical protein
1384	 32.29	-2	1870633..1870920	-	95	78189368	-	Cag_1405	-	hypothetical protein
1385	 37.22	-1	1870910..1871989	-	359	78189369	-	Cag_1406	-	hypothetical protein
1386	 49.84	+1	1872134..1874296	-	720	78189370	-	Cag_1407	-	M50 family peptidase
1387	 49.42	0	1874297..1876192	-	631	78189371	-	Cag_1408	-	membrane-fusion protein-like
1388	 45.69	0	1876262..1877200	-	312	78189372	-	Cag_1409	-	membrane-fusion protein-like
1389	 45.06	0	1877389..1879614	-	741	78189373	-	Cag_1410	-	isocitrate dehydrogenase NADP-dependent, monomeric type
1390	 43.23	0	1879918..1880796	-	292	78189374	-	Cag_1411	-	enoyl-(acyl-carrier protein) reductase (NADH)
1391	 44.21	0	1880924..1882228	-	434	78189375	-	Cag_1412	-	anion-transporting ATPase
1392	 46.98	0	1882375..1882953	-	192	78189376	-	Cag_1413	-	nitroreductase family protein
1393	 47.09	0	1882972..1884003	-	343	78189377	-	Cag_1414	-	hypothetical protein
1394	 47.45	0	1884000..1886231	-	743	78189378	-	Cag_1415	-	DNA helicase II
1395	 44.40	0	1886457..1887902	+	481	78189379	-	Cag_1416	-	alpha amylase domain-containing protein
1396	 39.20	0	1887973..1888398	+	141	78189380	-	Cag_1417	-	hypothetical protein
1397	 47.49	0	1888413..1888871	-	152	78189381	-	Cag_1418	-	phosphatidylglycerophosphatase A
1398	 45.25	0	1888875..1889495	-	206	78189382	-	Cag_1419	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1399	 47.36	0	1889812..1890816	+	334	78189383	-	Cag_1420	-	glyceraldehyde-3-phosphate dehydrogenase, type I
1400	 41.61	0	1890940..1891386	+	148	78189384	-	Cag_1421	-	hypothetical protein
1401	 48.13	0	1891468..1892670	-	400	78189385	-	Cag_1422	-	heat shock protein DnaJ
1402	 46.60	0	1892703..1893350	-	215	78189386	-	Cag_1423	-	molecular chaperone GrpE (heat shock protein)-like
1403	 44.32	0	1893393..1894439	-	348	78189387	-	Cag_1424	-	negative regulator of class I heat shock protein
1404	 51.90	+1	1894509..1895402	-	297	78189388	-	Cag_1425	-	modification methylase HemK
1405	 48.74	0	1895741..1896097	+	118	78189389	-	Cag_1427	-	hypothetical protein
1406	 45.16	0	1896198..1896992	+	264	78189390	-	Cag_1428	-	hypothetical protein
1407	 48.14	0	1897078..1898421	+	447	78189391	-	Cag_1429	-	cobyrinic acid a,c-diamide synthase CbiA
1408	 50.79	+1	1898866..1900515	+	549	78189392	-	Cag_1430	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1409	 46.39	0	1900634..1901629	-	331	78189393	-	Cag_1431	-	hypothetical protein
1410	 37.04	-1	1901863..1902078	+	71	78189394	-	Cag_1432	-	virulence-associated protein
1411	 40.90	0	1902062..1902484	+	140	78189395	-	Cag_1433	-	NtrR protein
1412	 45.20	0	1902822..1903217	+	131	78189396	-	Cag_1434	-	hypothetical protein
1413	 45.34	0	1903281..1903988	+	235	78189397	-	Cag_1435	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1414	 47.95	0	1904014..1904670	+	218	78189398	-	Cag_1436	-	DedA family protein
1415	 50.11	+1	1904809..1905702	+	297	78189399	-	Cag_1437	-	transketolase-like
1416	 46.85	0	1905723..1906277	+	184	78189400	-	Cag_1438	-	hypothetical protein
1417	 46.87	0	1906274..1906768	+	164	78189401	-	Cag_1439	-	coenzyme A biosynthesis protein
1418	 47.58	0	1907038..1908237	+	399	78189402	-	Cag_1440	-	aspartate aminotransferase, putative
1419	 34.33	-1	1908495..1909598	-	367	78189403	-	Cag_1441	-	hypothetical protein
1420	 41.33	0	1910580..1911404	-	274	78189404	-	Cag_1443	-	hypothetical protein
1421	 47.06	0	1911515..1912228	+	237	78189405	-	Cag_1444	-	ATPase
1422	 49.44	0	1912403..1913476	+	357	78189406	-	Cag_1445	-	isopentenyl pyrophosphate isomerase
1423	 45.98	0	1913488..1914483	+	331	78189407	-	Cag_1446	-	isoprenyl synthetase
1424	 50.52	+1	1914605..1915762	+	385	78189408	-	Cag_1447	-	SMF protein
1425	 44.51	0	1915969..1916514	+	181	78189409	-	Cag_1448	-	outer membrane protein OmpH
1426	 49.32	0	1916555..1917067	+	170	78189410	-	Cag_1449	-	hypothetical protein
1427	 47.18	0	1917121..1917510	+	129	78189411	-	Cag_1450	-	aspartate alpha-decarboxylase
1428	 48.52	0	1917526..1918269	+	247	78189412	-	Cag_1451	-	UDP-N-acetylglucosamine pyrophosphorylase
1429	 37.63	-1	1918344..1919669	+	441	78189413	-	Cag_1452	-	hypothetical protein
1430	 42.71	0	1919771..1921690	+	639	78189414	-	Cag_1453	-	TPR repeat-containing protein
1431	 52.10	+1	1921724..1922224	-	166	78189415	-	Cag_1454	-	glutathione S-transferase, fosfomycin resistance protein, putative
44.16	MEAN

5.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.