IslandPath Analysis: Chlorobium chlorochromatii CaD3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.16   STD DEV: 5.32
Chlorobium chlorochromatii CaD3, complete genome - 1..2572079
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
86	 40.29	0	95231..96466	+	411	78188070	-	Cag_0086	-	transposase
87	 45.38	0	96733..97122	+	129	78188071	-	Cag_0087	-	Iojap-related protein
88	 45.52	0	97415..99901	+	828	78188072	-	Cag_0088	-	DNA gyrase, subunit A
89	 44.56	0	100407..102116	+	569	78188073	-	Cag_0090	-	CTP synthetase
90	 39.22	0	107762..108169	+	135	78188074	-	Cag_0091	-	hypothetical protein
91	 46.40	0	108181..108708	+	175	78188075	-	Cag_0092	-	hypothetical protein
92	 45.24	0	108712..109719	+	335	78188076	-	Cag_0093	-	heptosyltransferase
93	 42.36	0	109940..110338	+	132	78188077	rpsF	Cag_0094	-	30S ribosomal protein S6
94	 41.18	0	110399..110857	+	152	78188078	-	Cag_0095	-	single-strand binding protein
95	 40.14	0	110910..111188	+	92	78188079	rpsR	Cag_0096	-	30S ribosomal protein S18
96	 43.64	0	111223..111678	+	151	78188080	rplI	Cag_0097	-	50S ribosomal protein L9
97	 43.92	0	111785..112417	-	210	78188081	-	Cag_0098	-	YgfB and YecA
98	 42.22	0	112665..113891	+	408	78188082	-	Cag_0099	-	sulfide dehydrogenase, flavoprotein subunit, putative
99	 49.16	0	114064..115485	+	473	78188083	trmE	Cag_0100	-	tRNA modification GTPase TrmE
100	 44.39	0	115674..116975	-	433	78188084	-	Cag_0101	-	hypothetical protein
101	 47.70	0	116979..117326	-	115	78188085	-	Cag_0102	-	XRE family transcriptional regulator
102	 50.83	+1	117743..118165	-	140	78188086	-	Cag_0103	-	cytochrome c-555, membrane-bound
103	 48.66	0	118404..119819	-	471	78188087	-	Cag_0104	-	Elongator protein 3/MiaB/NifB
104	 51.28	+1	119823..120446	-	207	78188088	-	Cag_0105	-	hypothetical protein
105	 48.42	0	120516..121655	-	379	78188089	-	Cag_0106	-	aminotransferase, class V
106	 50.63	+1	121673..122776	-	367	78188090	-	Cag_0107	-	carbamoyl phosphate synthase small subunit
107	 44.26	0	122786..123142	-	118	78188091	-	Cag_0108	-	hypothetical protein
108	 49.76	+1	123241..124293	-	350	78188092	-	Cag_0109	-	peptidase M22, glycoprotease
109	 39.47	0	124318..124545	+	75	78188093	-	Cag_0110	-	hypothetical protein
110	 48.55	0	124581..125579	+	332	78188094	-	Cag_0111	-	magnesium chelatase, subunit I, putative
111	 46.88	0	125579..126508	+	309	78188095	-	Cag_0112	-	von Willebrand factor, type A
112	 51.79	+1	126528..127475	+	315	78188096	-	Cag_0113	-	hypothetical protein
113	 43.28	0	127503..129332	-	609	78188097	-	Cag_0114	-	Elongator protein 3/MiaB/NifB
114	 42.08	0	129473..130489	-	338	78188098	-	Cag_0115	-	CrtF-related protein
115	 41.13	0	130592..131977	-	461	78188099	-	Cag_0116	-	Elongator protein 3/MiaB/NifB
116	 44.53	0	132031..133236	-	401	78188100	-	Cag_0117	-	anion-transporting ATPase
117	 52.58	+1	133602..133814	+	70	78188101	-	Cag_0118	-	hypothetical protein
118	 45.89	0	133896..134516	+	206	78188102	-	Cag_0119	-	hypothetical protein
119	 44.87	0	135000..135632	+	210	78188103	-	Cag_0120	-	hypothetical protein
120	 42.53	0	135930..136190	+	86	78188104	-	Cag_0121	-	hypothetical protein
121	 47.26	0	136281..137522	+	413	78188105	-	Cag_0122	-	LipD protein, putative
122	 46.02	0	137580..140804	+	1074	78188106	-	Cag_0123	-	AcrB/AcrD/AcrF family protein
123	 43.04	0	140817..141125	+	102	78188107	-	Cag_0124	-	hypothetical protein
124	 47.34	0	141125..141781	+	218	78188108	-	Cag_0125	-	hydroxyacylglutathione hydrolase, putative
125	 43.85	0	142005..142451	+	148	78188109	-	Cag_0126	-	CBS
126	 47.12	0	142665..144368	+	567	78188110	-	Cag_0127	-	succinate dehydrogenase or fumarate reductase, flavoprotein subunit
127	 45.09	0	144381..145418	+	345	78188111	-	Cag_0128	-	succinate dehydrogenase/fumarate reductase iron-sulfur protein
128	 42.64	0	145434..146282	+	282	78188112	-	Cag_0129	-	succinate/fumarate oxidoreductase, putative
129	 43.56	0	146461..147516	+	351	78188113	-	Cag_0130	-	uroporphyrinogen decarboxylase HemE
130	 49.92	+1	147619..148251	+	210	78188114	-	Cag_0131	-	phosphoheptose isomerase
131	 48.50	0	148328..148795	+	155	78188115	-	Cag_0132	-	6,7-dimethyl-8-ribityllumazine synthase
132	 32.92	-2	149294..149536	+	80	78188116	-	Cag_0133	-	hypothetical protein
133	 53.14	+1	149804..150520	+	238	78188117	-	Cag_0134	-	hypothetical protein
134	 38.18	-1	150630..150794	+	54	78188118	-	Cag_0135	-	hypothetical protein
135	 31.25	-2	150794..150889	+	31	78188119	-	Cag_0136	-	hypothetical protein
136	 43.60	0	150909..151619	-	236	78188120	-	Cag_0137	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
137	 46.67	0	151639..152958	-	439	78188121	-	Cag_0138	-	threonine synthase
138	 47.87	0	153005..153967	-	320	78188122	-	Cag_0139	-	homoserine kinase
139	 44.21	0	154291..155871	+	526	78188123	-	Cag_0140	-	F0F1 ATP synthase subunit alpha
140	 45.46	0	155918..156799	+	293	78188124	-	Cag_0141	-	F0F1 ATP synthase subunit gamma
141	 48.03	0	157165..159627	+	820	78188125	-	Cag_0142	-	bifunctional aspartokinase I/homeserine dehydrogenase I
142	 51.89	+1	159634..160905	+	423	78188126	-	Cag_0143	-	competence-damaged protein
143	 32.33	-2	161116..162813	+	565	78188127	-	Cag_0144	-	ATPase
144	 45.37	0	162849..164783	+	644	78188128	-	Cag_0145	-	DNA mismatch repair protein
145	 46.60	0	165069..165965	+	298	78188129	-	Cag_0146	-	monofunctional biosynthetic peptidoglycan transglycosylase
146	 49.69	+1	166003..166161	-	52	78188130	-	Cag_0147	-	rubredoxin
147	 51.98	+1	166303..167058	+	251	78188131	-	Cag_0148	-	hypothetical protein
148	 43.27	0	167163..167756	+	197	78188132	-	Cag_0149	-	NusG antitermination factor
149	 47.02	0	167801..169042	+	413	78188133	-	Cag_0150	-	hypothetical protein
150	 45.70	0	169072..169362	+	96	78188134	-	Cag_0151	-	hypothetical protein
151	 45.28	0	169359..169835	+	158	78188135	-	Cag_0152	-	hypothetical protein
152	 34.13	-1	169918..171174	+	418	78188136	-	Cag_0153	-	hypothetical protein
153	 48.95	0	171329..174184	-	951	78188137	-	Cag_0154	-	excinuclease ABC subunit A
154	 46.56	0	174339..177089	-	916	78188138	-	Cag_0155	-	pyruvate phosphate dikinase
155	 51.42	+1	177361..178239	+	292	78188139	-	Cag_0156	-	ABC transporter, permease protein
156	 45.60	0	178260..179066	-	268	78188140	-	Cag_0157	-	zinc transporter ZupT
157	 43.82	0	179185..179661	-	158	78188141	-	Cag_0158	-	CrtK protein
158	 39.43	0	179744..180235	+	163	78188142	-	Cag_0159	-	hypothetical protein
159	 39.33	0	180237..181553	+	438	78188143	-	Cag_0160	-	TPR repeat-containing protein
160	 50.75	+1	181614..182417	+	267	78188144	-	Cag_0161	-	extragenic suppressor protein SuhB
161	 45.09	0	182612..184015	+	467	78188145	-	Cag_0162	-	bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase
162	 44.50	0	184548..185102	-	184	78188146	-	Cag_0163	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
163	 51.12	+1	185205..185783	-	192	78188147	-	Cag_0164	-	crossover junction endodeoxyribonuclease RuvC
164	 44.75	0	185792..186544	-	250	162319775	-	Cag_0165	-	hypothetical protein
165	 38.01	-1	186875..188113	+	412	78188149	-	Cag_0166	-	putative transcriptional regulator
166	 49.71	+1	188169..188846	-	225	78188150	-	Cag_0167	-	isoprenoid biosynthesis protein
167	 45.30	0	188945..189487	+	180	78188151	-	Cag_0168	-	isochorismatase superfamily hydrolase
168	 48.84	0	189581..190696	-	371	78188152	-	Cag_0169	-	tetraacyldisaccharide-1-P 4'-kinase
169	 47.39	0	190689..191300	-	203	78188153	-	Cag_0170	-	hypothetical protein
170	 49.11	0	191587..192873	+	428	78188154	-	Cag_0171	-	phosphoribosylamine--glycine ligase
171	 42.76	0	192870..193304	+	144	78188155	-	Cag_0172	-	hypothetical protein
172	 47.46	0	193438..194916	+	492	78188156	-	Cag_0173	-	carbamoyl-phosphate synthase, medium subunit
173	 46.90	0	194938..195711	+	257	78188157	-	Cag_0174	-	indole-3-glycerol phosphate synthase
174	 45.66	0	195698..196354	-	218	78188158	-	Cag_0175	-	ribulose-phosphate 3-epimerase
175	 45.46	0	196403..198628	-	741	78188159	-	Cag_0176	-	hypothetical protein
176	 45.18	0	198728..198955	-	75	78188160	-	Cag_0177	-	hypothetical protein
177	 47.31	0	198984..199949	-	321	78188161	-	Cag_0178	-	membrane proteins related to metalloendopeptidase-like
178	 48.18	0	200023..202797	-	924	78188162	-	Cag_0179	-	DNA polymerase A
179	 45.54	0	202983..203834	-	283	78188163	-	Cag_0180	-	prephenate dehydratase
180	 35.66	-1	203930..204532	-	200	78188164	-	Cag_0181	-	hypothetical protein
181	 39.09	0	204766..205824	-	352	78188165	-	Cag_0182	-	Fic family protein
182	 45.87	0	206164..207495	-	443	78188166	clpX	Cag_0183	-	ATP-dependent protease ATP-binding subunit
183	 48.72	0	207619..207891	-	90	78188167	-	Cag_0184	-	hypothetical protein
184	 48.51	0	207912..209387	-	491	78188168	gltD	Cag_0185	-	glutamate synthase subunit beta
185	 45.85	0	209408..214009	-	1533	78188169	-	Cag_0186	-	glutamate synthase, large subunit
44.16	MEAN

5.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.