IslandPathversion 1.0

IslandPath Analysis: Chlorobium chlorochromatii CaD3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.16 STD DEV: 5.32
Chlorobium chlorochromatii CaD3, complete genome - 1..2572079
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1205	 51.39	+1	1620671..1622464	+	597	78189189	-	Cag_1222	-	methylmalonyl-CoA mutase N-terminal domain-containing protein
1206	 51.43	+1	1622461..1624599	+	712	78189190	-	Cag_1223	-	methylmalonyl-CoA mutase
1207	 41.24	0	1624902..1627139	-	745	78189191	-	Cag_1224	-	hypothetical protein
1208	 38.61	-1	1627859..1629013	+	384	78189192	-	Cag_1226	-	hypothetical protein
1209	 37.59	-1	1629010..1629291	+	93	78189193	-	Cag_1227	-	hypothetical protein
1210	 46.67	0	1629314..1630963	-	549	78189194	-	Cag_1228	-	Fis family transcriptional regulator
1211	 49.74	+1	1631078..1632223	-	381	78189195	-	Cag_1229	-	homocitrate synthase
1212	 47.04	0	1632539..1633384	+	281	78189196	-	Cag_1230	-	molybdenum-pterin binding protein
1213	 41.03	0	1633438..1633710	-	90	78189197	-	Cag_1231	-	hypothetical protein
1214	 50.47	+1	1634163..1635113	+	316	78189198	-	Cag_1232	-	putative aldo/keto reductase
1215	 41.96	0	1635128..1635892	+	254	78189199	-	Cag_1233	-	Band 7 protein
1216	 42.48	0	1635904..1636362	+	152	78189200	-	Cag_1234	-	universal stress protein
1217	 47.03	0	1636866..1642940	+	2024	78189201	-	Cag_1235	-	hypothetical protein
1218	 43.64	0	1643076..1643783	+	235	78189202	-	Cag_1236	-	hypothetical protein
1219	 51.63	+1	1643795..1644805	-	336	78189203	-	Cag_1237	-	arginine/ornithine transport system ATPase
1220	 37.23	-1	1644888..1645400	-	170	78189204	-	Cag_1238	-	hypothetical protein
1221	 41.52	0	1645671..1653056	-	2461	78189205	-	Cag_1239	-	VCBS
1222	 38.31	-1	1653350..1654354	-	334	78189206	-	Cag_1240	-	hypothetical protein
1223	 35.58	-1	1654521..1656080	-	519	78189207	-	Cag_1241	-	hypothetical protein
1224	 47.83	0	1656265..1705200	-	16311	78189208	-	Cag_1242	-	VCBS
1225	 42.55	0	1705687..1706619	+	310	78189209	-	Cag_1243	-	hypothetical protein
1226	 45.33	0	1707194..1708018	+	274	78189210	nifH	Cag_1244	-	nitrogenase reductase
1227	 43.22	0	1708036..1708389	+	117	78189211	-	Cag_1245	-	nitrogen regulatory protein P-II (GlnB, GlnK)
1228	 43.12	0	1708390..1708767	+	125	78189212	-	Cag_1246	-	nitrogen regulatory protein P-II (GlnB, GlnK)
1229	 45.93	0	1708852..1710486	+	544	78189213	-	Cag_1247	-	nitrogenase molybdenum-iron protein alpha chain
1230	 48.08	0	1710520..1711977	+	485	78189214	-	Cag_1248	-	nitrogenase molybdenum-iron protein beta chain
1231	 46.18	0	1712231..1713592	+	453	78189215	-	Cag_1249	-	nitrogenase MoFe cofactor biosynthesis protein NifE
1232	 47.61	0	1713589..1714947	+	452	78189216	-	Cag_1250	-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifN, putative
1233	 48.51	0	1714963..1716234	+	423	78189217	-	Cag_1251	-	nitrogenase cofactor biosynthesis protein NifB
1234	 45.31	0	1716681..1716989	+	102	78189218	-	Cag_1252	-	ferredoxin, 2Fe-2S
1235	 44.94	0	1717111..1719333	+	740	78189219	-	Cag_1253	-	TonB-dependent receptor, putative
1236	 33.63	-1	1719779..1720444	-	221	78189220	-	Cag_1254	-	hypothetical protein
1237	 33.57	-1	1720458..1721726	-	422	78189221	-	Cag_1255	-	Outer membrane protein and related peptidoglycan-associated (lipo)proteins-like
1238	 43.84	0	1721839..1723560	-	573	78189222	-	Cag_1256	-	TPR repeat-containing protein
1239	 50.12	+1	1723872..1725146	+	424	78189223	-	Cag_1257	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
1240	 50.30	+1	1725416..1726399	+	327	78189224	-	Cag_1258	-	cysteine synthase K/M/A
1241	 37.10	-1	1726497..1726868	+	123	78189225	-	Cag_1259	-	hypothetical protein
1242	 39.89	0	1726903..1727466	+	187	78189226	-	Cag_1260	-	XRE family transcriptional regulator
1243	 48.37	0	1727552..1728442	+	296	78189227	-	Cag_1261	-	putative serine acetyltransferase
1244	 33.33	-2	1728528..1728770	+	80	78189228	-	Cag_1262	-	hypothetical protein
1245	 35.27	-1	1728823..1729443	+	206	78189229	-	Cag_1263	-	hypothetical protein
1246	 50.52	+1	1729512..1730663	+	383	78189230	-	Cag_1264	-	trans-sulfuration enzyme family protein
1247	 36.91	-1	1730878..1732860	+	660	78189231	-	Cag_1265	-	putative membrane-located cell surface saccharide saccharide acetylase protein
1248	 49.02	0	1732968..1733171	+	67	78189232	-	Cag_1266	-	ThiS, thiamine-biosynthesis
1249	 50.97	+1	1733220..1733990	+	256	78189233	thiG	Cag_1267	-	thiazole synthase
1250	 52.29	+1	1733993..1735063	+	356	78189234	thiH	Cag_1268	-	thiamine biosynthesis protein ThiH
1251	 38.76	-1	1735150..1735536	+	128	78189235	-	Cag_1269	-	hypothetical protein
1252	 51.67	+1	1735556..1736302	+	248	78189236	-	Cag_1270	-	thiamine biosynthesis protein ThiF
1253	 45.80	0	1736327..1736743	-	138	78189237	-	Cag_1271	-	rhodanese-like protein
1254	 42.50	0	1736883..1737122	+	79	78189238	-	Cag_1272	-	hypothetical protein
1255	 44.05	0	1737133..1737636	+	167	78189239	-	Cag_1273	-	hypothetical protein
1256	 44.83	0	1737738..1737998	+	86	78189240	-	Cag_1274	-	XRE family transcriptional regulator
1257	 41.47	0	1737991..1739268	+	425	78189241	-	Cag_1275	-	hypothetical protein
1258	 50.87	+1	1739311..1740747	+	478	78189242	-	Cag_1276	-	dihydrolipoamide dehydrogenase
1259	 39.68	0	1741184..1741372	-	62	78189243	-	Cag_1277	-	hypothetical protein
1260	 34.67	-1	1741615..1742211	+	198	78189244	-	Cag_1278	-	hypothetical protein
1261	 49.94	+1	1743376..1744206	-	276	78189245	nadE	Cag_1279	-	NAD synthetase
1262	 48.65	0	1744216..1744770	-	184	78189246	-	Cag_1280	-	hypothetical protein
1263	 49.21	0	1744799..1746310	-	503	78189247	-	Cag_1281	-	membrane-bound metallopeptidase-like
1264	 49.14	0	1746629..1747900	+	423	78189248	-	Cag_1282	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1265	 51.88	+1	1748041..1748412	-	123	78189249	-	Cag_1283	-	hypothetical protein
1266	 47.75	0	1748442..1748774	-	110	78189250	-	Cag_1284	-	hypothetical protein
1267	 44.22	0	1749610..1749903	-	97	78189251	-	Cag_1285	-	hypothetical protein
1268	 47.08	0	1749962..1752529	-	855	78189252	-	Cag_1286	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
1269	 39.77	0	1752645..1752908	+	87	78189253	-	Cag_1287	-	hypothetical protein
1270	 48.83	0	1752971..1753996	-	341	78189254	-	Cag_1288	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1271	 48.87	0	1754009..1755295	-	428	78189255	-	Cag_1289	-	histidinol dehydrogenase
1272	 45.48	0	1755473..1756501	+	342	78189256	-	Cag_1290	-	cell shape determining protein MreB/Mrl
1273	 37.46	-1	1756524..1756814	+	96	78189257	-	Cag_1291	-	hypothetical protein
1274	 38.48	-1	1756796..1757203	+	135	78189258	-	Cag_1292	-	hypothetical protein
1275	 46.40	0	1757917..1759056	-	379	78189259	-	Cag_1294	-	glycosyl transferase
1276	 41.03	0	1759135..1759719	-	194	78189260	-	Cag_1295	-	MCBG protein (microcin resistance protein)-like
1277	 43.29	0	1759852..1760805	+	317	78189261	-	Cag_1296	-	hypothetical protein
1278	 48.75	0	1761182..1762381	-	399	78189262	-	Cag_1297	-	tryptophan synthase subunit beta
1279	 45.75	0	1762589..1765150	+	853	78189263	-	Cag_1298	-	hypothetical protein
1280	 43.71	0	1765147..1766013	-	288	78189264	-	Cag_1299	-	dihydrolipoamide acetyltransferase, putative
1281	 44.21	0	1766153..1766713	+	186	78189265	-	Cag_1300	-	hypothetical protein
1282	 48.92	0	1766885..1769713	+	942	78189266	-	Cag_1301	-	excinuclease ABC subunit A
1283	 40.40	0	1769809..1771068	+	419	78189267	-	Cag_1302	-	ATPase-like
1284	 42.41	0	1771065..1771571	+	168	78189268	-	Cag_1303	-	hypothetical protein
1285	 49.84	+1	1771601..1771909	-	102	78189269	-	Cag_1304	-	hypothetical protein
1286	 43.16	0	1772111..1772395	+	94	162319773	groES	Cag_1305	-	co-chaperonin GroES
1287	 45.68	0	1772444..1774087	+	547	78189271	groEL	Cag_1306	-	chaperonin GroEL
1288	 37.36	-1	1774268..1774615	+	115	78189272	-	Cag_1307	-	hypothetical protein
1289	 39.66	0	1774629..1774976	+	115	78189273	-	Cag_1308	-	hypothetical protein
1290	 38.15	-1	1775083..1777884	+	933	78189274	-	Cag_1309	-	methylase
1291	 25.93	-2	1777911..1778585	+	224	78189275	-	Cag_1310	-	HNH nuclease
1292	 35.02	-1	1778637..1778873	+	78	78189276	-	Cag_1311	-	hypothetical protein
1293	 36.51	-1	1779270..1779521	+	83	78189277	-	Cag_1312	-	hypothetical protein
1294	 50.08	+1	1779678..1780334	+	218	78189278	-	Cag_1313	-	ExsB
1295	 45.07	0	1780430..1781119	+	229	78189279	-	Cag_1314	-	hypothetical protein
1296	 51.12	+1	1781123..1781926	+	267	78189280	trpA	Cag_1315	-	tryptophan synthase subunit alpha
1297	 49.30	0	1781942..1783018	+	358	78189281	-	Cag_1316	-	glycosyl transferase
1298	 49.01	0	1783423..1786044	+	873	78189282	-	Cag_1317	-	DNA mismatch repair protein
1299	 35.90	-1	1786282..1786515	+	77	78189283	-	Cag_1318	-	hypothetical protein
1300	 36.44	-1	1786512..1786865	+	117	78189284	-	Cag_1319	-	transcriptional modulator of MazE/toxin, MazF
1301	 50.04	+1	1787030..1788448	+	472	78189285	-	Cag_1320	-	Elongator protein 3/MiaB/NifB
1302	 40.80	0	1788995..1789543	-	182	78189286	-	Cag_1321	-	hypothetical protein
1303	 35.62	-1	1789662..1789967	-	101	78189287	-	Cag_1322	-	hypothetical protein
1304	 38.82	-1	1789964..1790200	-	78	78189288	-	Cag_1323	-	hypothetical protein
44.16	MEAN

5.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.