IslandPath Analysis: Chlorobium chlorochromatii CaD3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.16   STD DEV: 5.32
Chlorobium chlorochromatii CaD3, complete genome - 1..2572079
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
58	 45.80	0	67141..68448	+	435	78188042	-	Cag_0058	-	cell division protein FtsA
59	 46.42	0	68500..69783	+	427	78188043	-	Cag_0059	-	cell division protein FtsZ
60	 47.18	0	69885..71177	+	430	78188044	-	Cag_0060	-	4-hydroxybutyrate coenzyme A transferase
61	 47.14	0	71235..72002	-	255	78188045	-	Cag_0061	-	hypothetical protein
62	 38.19	-1	72153..72440	+	95	78188046	-	Cag_0062	-	hypothetical protein
63	 35.17	-1	72485..72865	+	126	78188047	-	Cag_0063	-	hypothetical protein
64	 42.20	0	72869..73906	+	345	78188048	-	Cag_0064	-	F0F1 ATP synthase subunit A
65	 50.00	+1	74018..74245	+	75	78188049	-	Cag_0065	-	ATP synthase F0, C subunit
66	 41.86	0	74350..74877	+	175	78188050	-	Cag_0066	-	ATP synthase F0, subunit B
67	 40.37	0	74894..75433	+	179	78188051	-	Cag_0067	-	F0F1 ATP synthase subunit delta
68	 44.55	0	75750..76685	+	311	78188052	-	Cag_0068	-	putative lipoprotein
69	 47.05	0	76707..77282	+	191	78188053	-	Cag_0069	-	nicotinate-nucleotide adenylyltransferase
70	 44.30	0	77346..79004	-	552	78188054	argS	Cag_0070	-	arginyl-tRNA synthetase
71	 46.67	0	79067..79771	-	234	78188055	-	Cag_0071	-	Beta-phosphoglucomutase hydrolase
72	 48.83	0	79762..80826	-	354	78188056	-	Cag_0072	-	tryptophanyl-tRNA synthetase
73	 44.86	0	81266..82315	+	349	78188057	-	Cag_0073	-	deoxyhypusine synthase-like protein
74	 42.00	0	82330..82998	+	222	78188058	-	Cag_0074	-	putative translaldolase
75	 47.93	0	83182..85578	-	798	78188059	-	Cag_0075	-	DNA topoisomerase I
76	 49.28	0	85769..87493	+	574	78188060	-	Cag_0076	-	cell wall hydrolase/autolysin
77	 50.41	+1	87595..88578	+	327	78188061	-	Cag_0077	-	biotin--acetyl-CoA-carboxylase ligase
78	 48.64	0	88598..89590	+	330	78188062	-	Cag_0078	-	Elongator protein 3/MiaB/NifB
79	 51.56	+1	89590..90774	+	394	78188063	-	Cag_0079	-	8-amino-7-oxononanoate synthase
80	 50.00	+1	90774..91547	+	257	78188064	-	Cag_0080	-	hypothetical protein
81	 47.33	0	91532..92317	+	261	78188065	-	Cag_0081	-	biotin biosynthesis protein BioC
82	 46.49	0	92326..93009	+	227	78188066	bioD	Cag_0082	-	dithiobiotin synthetase
83	 50.31	+1	93049..94332	+	427	78188067	-	Cag_0083	-	adenosylmethionine--8-amino-7-oxononanoate aminotransferase
84	 41.21	0	94409..94738	-	109	78188068	-	Cag_0084	-	XRE family transcriptional regulator
85	 39.94	0	94725..95057	-	110	78188069	-	Cag_0085	-	phage-like
86	 40.29	0	95231..96466	+	411	78188070	-	Cag_0086	-	transposase
87	 45.38	0	96733..97122	+	129	78188071	-	Cag_0087	-	Iojap-related protein
88	 45.52	0	97415..99901	+	828	78188072	-	Cag_0088	-	DNA gyrase, subunit A
89	 44.56	0	100407..102116	+	569	78188073	-	Cag_0090	-	CTP synthetase
90	 39.22	0	107762..108169	+	135	78188074	-	Cag_0091	-	hypothetical protein
91	 46.40	0	108181..108708	+	175	78188075	-	Cag_0092	-	hypothetical protein
92	 45.24	0	108712..109719	+	335	78188076	-	Cag_0093	-	heptosyltransferase
93	 42.36	0	109940..110338	+	132	78188077	rpsF	Cag_0094	-	30S ribosomal protein S6
94	 41.18	0	110399..110857	+	152	78188078	-	Cag_0095	-	single-strand binding protein
95	 40.14	0	110910..111188	+	92	78188079	rpsR	Cag_0096	-	30S ribosomal protein S18
96	 43.64	0	111223..111678	+	151	78188080	rplI	Cag_0097	-	50S ribosomal protein L9
97	 43.92	0	111785..112417	-	210	78188081	-	Cag_0098	-	YgfB and YecA
98	 42.22	0	112665..113891	+	408	78188082	-	Cag_0099	-	sulfide dehydrogenase, flavoprotein subunit, putative
99	 49.16	0	114064..115485	+	473	78188083	trmE	Cag_0100	-	tRNA modification GTPase TrmE
100	 44.39	0	115674..116975	-	433	78188084	-	Cag_0101	-	hypothetical protein
101	 47.70	0	116979..117326	-	115	78188085	-	Cag_0102	-	XRE family transcriptional regulator
102	 50.83	+1	117743..118165	-	140	78188086	-	Cag_0103	-	cytochrome c-555, membrane-bound
103	 48.66	0	118404..119819	-	471	78188087	-	Cag_0104	-	Elongator protein 3/MiaB/NifB
104	 51.28	+1	119823..120446	-	207	78188088	-	Cag_0105	-	hypothetical protein
105	 48.42	0	120516..121655	-	379	78188089	-	Cag_0106	-	aminotransferase, class V
106	 50.63	+1	121673..122776	-	367	78188090	-	Cag_0107	-	carbamoyl phosphate synthase small subunit
107	 44.26	0	122786..123142	-	118	78188091	-	Cag_0108	-	hypothetical protein
108	 49.76	+1	123241..124293	-	350	78188092	-	Cag_0109	-	peptidase M22, glycoprotease
109	 39.47	0	124318..124545	+	75	78188093	-	Cag_0110	-	hypothetical protein
110	 48.55	0	124581..125579	+	332	78188094	-	Cag_0111	-	magnesium chelatase, subunit I, putative
111	 46.88	0	125579..126508	+	309	78188095	-	Cag_0112	-	von Willebrand factor, type A
112	 51.79	+1	126528..127475	+	315	78188096	-	Cag_0113	-	hypothetical protein
113	 43.28	0	127503..129332	-	609	78188097	-	Cag_0114	-	Elongator protein 3/MiaB/NifB
114	 42.08	0	129473..130489	-	338	78188098	-	Cag_0115	-	CrtF-related protein
115	 41.13	0	130592..131977	-	461	78188099	-	Cag_0116	-	Elongator protein 3/MiaB/NifB
116	 44.53	0	132031..133236	-	401	78188100	-	Cag_0117	-	anion-transporting ATPase
117	 52.58	+1	133602..133814	+	70	78188101	-	Cag_0118	-	hypothetical protein
118	 45.89	0	133896..134516	+	206	78188102	-	Cag_0119	-	hypothetical protein
119	 44.87	0	135000..135632	+	210	78188103	-	Cag_0120	-	hypothetical protein
120	 42.53	0	135930..136190	+	86	78188104	-	Cag_0121	-	hypothetical protein
121	 47.26	0	136281..137522	+	413	78188105	-	Cag_0122	-	LipD protein, putative
122	 46.02	0	137580..140804	+	1074	78188106	-	Cag_0123	-	AcrB/AcrD/AcrF family protein
123	 43.04	0	140817..141125	+	102	78188107	-	Cag_0124	-	hypothetical protein
124	 47.34	0	141125..141781	+	218	78188108	-	Cag_0125	-	hydroxyacylglutathione hydrolase, putative
125	 43.85	0	142005..142451	+	148	78188109	-	Cag_0126	-	CBS
126	 47.12	0	142665..144368	+	567	78188110	-	Cag_0127	-	succinate dehydrogenase or fumarate reductase, flavoprotein subunit
127	 45.09	0	144381..145418	+	345	78188111	-	Cag_0128	-	succinate dehydrogenase/fumarate reductase iron-sulfur protein
128	 42.64	0	145434..146282	+	282	78188112	-	Cag_0129	-	succinate/fumarate oxidoreductase, putative
129	 43.56	0	146461..147516	+	351	78188113	-	Cag_0130	-	uroporphyrinogen decarboxylase HemE
130	 49.92	+1	147619..148251	+	210	78188114	-	Cag_0131	-	phosphoheptose isomerase
131	 48.50	0	148328..148795	+	155	78188115	-	Cag_0132	-	6,7-dimethyl-8-ribityllumazine synthase
132	 32.92	-2	149294..149536	+	80	78188116	-	Cag_0133	-	hypothetical protein
133	 53.14	+1	149804..150520	+	238	78188117	-	Cag_0134	-	hypothetical protein
134	 38.18	-1	150630..150794	+	54	78188118	-	Cag_0135	-	hypothetical protein
135	 31.25	-2	150794..150889	+	31	78188119	-	Cag_0136	-	hypothetical protein
136	 43.60	0	150909..151619	-	236	78188120	-	Cag_0137	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
137	 46.67	0	151639..152958	-	439	78188121	-	Cag_0138	-	threonine synthase
138	 47.87	0	153005..153967	-	320	78188122	-	Cag_0139	-	homoserine kinase
139	 44.21	0	154291..155871	+	526	78188123	-	Cag_0140	-	F0F1 ATP synthase subunit alpha
140	 45.46	0	155918..156799	+	293	78188124	-	Cag_0141	-	F0F1 ATP synthase subunit gamma
141	 48.03	0	157165..159627	+	820	78188125	-	Cag_0142	-	bifunctional aspartokinase I/homeserine dehydrogenase I
142	 51.89	+1	159634..160905	+	423	78188126	-	Cag_0143	-	competence-damaged protein
143	 32.33	-2	161116..162813	+	565	78188127	-	Cag_0144	-	ATPase
144	 45.37	0	162849..164783	+	644	78188128	-	Cag_0145	-	DNA mismatch repair protein
145	 46.60	0	165069..165965	+	298	78188129	-	Cag_0146	-	monofunctional biosynthetic peptidoglycan transglycosylase
146	 49.69	+1	166003..166161	-	52	78188130	-	Cag_0147	-	rubredoxin
147	 51.98	+1	166303..167058	+	251	78188131	-	Cag_0148	-	hypothetical protein
148	 43.27	0	167163..167756	+	197	78188132	-	Cag_0149	-	NusG antitermination factor
149	 47.02	0	167801..169042	+	413	78188133	-	Cag_0150	-	hypothetical protein
150	 45.70	0	169072..169362	+	96	78188134	-	Cag_0151	-	hypothetical protein
151	 45.28	0	169359..169835	+	158	78188135	-	Cag_0152	-	hypothetical protein
152	 34.13	-1	169918..171174	+	418	78188136	-	Cag_0153	-	hypothetical protein
153	 48.95	0	171329..174184	-	951	78188137	-	Cag_0154	-	excinuclease ABC subunit A
154	 46.56	0	174339..177089	-	916	78188138	-	Cag_0155	-	pyruvate phosphate dikinase
155	 51.42	+1	177361..178239	+	292	78188139	-	Cag_0156	-	ABC transporter, permease protein
156	 45.60	0	178260..179066	-	268	78188140	-	Cag_0157	-	zinc transporter ZupT
157	 43.82	0	179185..179661	-	158	78188141	-	Cag_0158	-	CrtK protein
44.16	MEAN

5.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.