IslandPathversion 1.0

IslandPath Analysis: Chlorobium chlorochromatii CaD3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.16 STD DEV: 5.32
Chlorobium chlorochromatii CaD3, complete genome - 1..2572079
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
996	 51.47	+1	1355091..1355735	-	214	78188980	-	Cag_1013	-	nitroreductase family protein
997	 41.15	0	1356053..1357996	-	647	78188981	-	Cag_1014	-	TonB-dependent receptor-related protein
998	 42.26	0	1358615..1359589	-	324	78188982	-	Cag_1015	-	hypothetical protein
999	 49.71	+1	1359894..1360589	+	231	78188983	-	Cag_1016	-	hypothetical protein
1000	 41.75	0	1361039..1361977	+	312	78188984	-	Cag_1017	-	HhH-GPD
1001	 47.71	0	1362394..1365447	+	1017	78188985	secA	Cag_1018	-	preprotein translocase subunit SecA
1002	 48.29	0	1365493..1367778	+	761	78188986	-	Cag_1019	-	phosphoribosylformylglycinamidine synthase II
1003	 50.32	+1	1368168..1369745	+	525	78188987	-	Cag_1020	-	YjeF-related protein-like
1004	 32.41	-2	1369800..1371317	-	505	78188988	-	Cag_1021	-	hypothetical protein
1005	 43.61	0	1371435..1377236	-	1933	78188989	-	Cag_1022	-	hypothetical protein
1006	 47.21	0	1377302..1378519	-	405	78188990	-	Cag_1023	-	glycosyltransferase-like protein
1007	 33.00	-2	1378520..1380037	-	505	78188991	-	Cag_1024	-	hypothetical protein
1008	 32.21	-2	1380089..1381606	-	505	78188992	-	Cag_1025	-	hypothetical protein
1009	 45.96	0	1381847..1394986	-	4379	78188993	-	Cag_1026	-	C-type lectin
1010	 44.31	0	1395188..1396390	-	400	78188994	-	Cag_1027	-	aspartate aminotransferase
1011	 46.65	0	1396661..1398169	+	502	78188995	-	Cag_1028	-	heterodisulfide reductase, subunit C/succinate dehydrogenase, subunit C
1012	 47.18	0	1398353..1400323	+	656	78188996	-	Cag_1029	-	heterodisulfide reductase, subunit A
1013	 48.67	0	1400408..1400857	+	149	78188997	-	Cag_1030	-	hydrogenase, methyl-violgen-reducing type, delta subunit
1014	 47.67	0	1400864..1401700	+	278	78188998	-	Cag_1031	-	hydrogenase, iron-sulfur binding protein, putative
1015	 48.52	0	1401712..1402725	+	337	78188999	-	Cag_1032	-	hydrogenase/sulfur reductase, beta subunit
1016	 47.84	0	1402736..1403590	+	284	78189000	-	Cag_1033	-	hydrogenase/sulfur reductase, gamma subunit
1017	 43.17	0	1403907..1404872	-	321	78189001	-	Cag_1034	-	hypothetical protein
1018	 47.38	0	1406113..1406646	+	177	78189002	-	Cag_1035	-	hypothetical protein
1019	 42.96	0	1406725..1407015	+	96	78189003	-	Cag_1036	-	hypothetical protein
1020	 41.45	0	1407190..1407645	+	151	78189004	-	Cag_1037	-	hypothetical protein
1021	 41.42	0	1407794..1408201	+	135	78189005	-	Cag_1038	-	hypothetical protein
1022	 48.19	0	1408290..1408841	-	183	78189006	-	Cag_1039	-	Outer membrane protein and related peptidoglycan-associated (lipo)proteins-like
1023	 43.62	0	1409175..1409699	+	174	78189007	-	Cag_1040	-	hypothetical protein
1024	 43.99	0	1409777..1410067	+	96	78189008	-	Cag_1041	-	hypothetical protein
1025	 40.34	0	1410353..1410823	+	156	78189009	-	Cag_1042	-	hypothetical protein
1026	 42.65	0	1410881..1411084	+	67	78189010	-	Cag_1043	-	hypothetical protein
1027	 43.68	0	1411104..1411451	+	115	78189011	-	Cag_1044	-	hypothetical protein
1028	 45.80	0	1411475..1414048	+	857	78189012	-	Cag_1045	-	hypothetical protein
1029	 32.95	-2	1414240..1415802	+	520	78189013	-	Cag_1046	-	hypothetical protein
1030	 44.15	0	1416029..1417507	+	492	78189014	-	Cag_1047	-	hypothetical protein
1031	 42.44	0	1417669..1421049	+	1126	78189015	-	Cag_1048	-	hypothetical protein
1032	 31.31	-2	1421332..1421529	+	65	78189016	-	Cag_1049	-	hypothetical protein
1033	 37.76	-1	1422067..1422360	+	97	78189017	-	Cag_1050	-	hypothetical protein
1034	 30.03	-2	1422743..1423045	+	100	78189018	-	Cag_1051	-	hypothetical protein
1035	 51.99	+1	1423658..1424986	-	442	78189019	-	Cag_1052	-	hypothetical protein
1036	 43.69	0	1425092..1429435	-	1447	78189020	-	Cag_1053	-	filamentous haemagglutinin-like
1037	 46.45	0	1429504..1431234	-	576	78189021	-	Cag_1054	-	activation/secretion signal peptide protein
1038	 43.57	0	1431759..1436114	-	1451	78189022	-	Cag_1055	-	filamentous haemagglutinin-like
1039	 46.10	0	1436182..1437912	-	576	78189023	-	Cag_1056	-	hemolysin activation/secretion protein-like
1040	 51.25	+1	1438222..1438980	-	252	78189024	-	Cag_1057	-	cobalamin-5-phosphate synthase CobS
1041	 49.39	0	1438984..1440048	-	354	78189025	-	Cag_1058	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1042	 46.15	0	1440094..1441092	-	332	78189026	-	Cag_1059	-	hypothetical protein
1043	 50.32	+1	1441377..1442483	-	368	78189027	-	Cag_1060	-	molybdopterin-guanine dinucleotide biosynthesis MobB region
1044	 35.41	-1	1442501..1443415	-	304	78189028	-	Cag_1061	-	phage AbiD protein
1045	 27.13	-2	1443874..1445340	-	488	78189029	-	Cag_1062	-	hypothetical protein
1046	 40.29	0	1445420..1446655	+	411	78189030	-	Cag_1063	-	transposase
1047	 50.61	+1	1446707..1447933	-	408	78189031	-	Cag_1064	-	molybdopterin binding domain-containing protein
1048	 50.79	+1	1447930..1448874	-	314	78189032	moaC	Cag_1065	-	bifunctional molybdenum cofactor biosynthesis protein C/molybdopterin-binding protein
1049	 45.04	0	1448871..1449152	-	93	78189033	-	Cag_1066	-	hypothetical protein
1050	 33.33	-2	1449166..1449435	-	89	78189034	-	Cag_1067	-	hypothetical protein
1051	 51.94	+1	1449677..1450579	+	300	78189035	-	Cag_1068	-	lipoyl synthase
1052	 39.30	0	1450612..1451181	+	189	78189036	-	Cag_1069	-	hypothetical protein
1053	 42.55	0	1451308..1452186	-	292	78189037	-	Cag_1070	-	hypothetical protein
1054	 45.71	0	1452372..1454261	-	629	78189038	-	Cag_1071	-	heat shock protein 90
1055	 48.98	0	1454547..1455428	-	293	78189039	-	Cag_1072	-	sialic acid synthase
1056	 47.78	0	1455526..1456044	-	172	78189040	-	Cag_1073	-	phosphatase kdsC
1057	 45.31	0	1456228..1457529	+	433	78189041	-	Cag_1074	-	xanthine/uracil permease family protein
1058	 47.45	0	1457541..1458383	+	280	78189042	-	Cag_1075	-	carbon-nitrogen hydrolase family protein
1059	 45.31	0	1458376..1459218	-	280	78189043	-	Cag_1076	-	hypothetical protein
1060	 39.55	0	1459223..1459624	-	133	78189044	-	Cag_1077	-	hypothetical protein
1061	 42.97	0	1459621..1459869	-	82	78189045	-	Cag_1078	-	AbrB family transcriptional regulator
1062	 49.84	+1	1459989..1461254	-	421	78189046	-	Cag_1079	-	ATPase
1063	 30.70	-2	1461357..1462874	-	505	78189047	-	Cag_1080	-	hypothetical protein
1064	 43.88	0	1463210..1464631	+	473	78189048	-	Cag_1081	-	D-alanyl-D-alanine carboxypeptidase
1065	 50.26	+1	1464739..1464927	-	62	78189049	-	Cag_1082	-	ferredoxin, 4Fe-4S
1066	 48.23	0	1465060..1466019	-	319	78189050	-	Cag_1083	-	PhoH family protein
1067	 48.11	0	1466203..1467183	-	326	78189051	-	Cag_1084	-	ADP-L-glycero-D-manno-heptose-6-epimerase
1068	 52.38	+1	1467362..1467760	-	132	78189052	-	Cag_1085	-	hypothetical protein
1069	 46.25	0	1467990..1469081	+	363	78189053	-	Cag_1086	-	histidinol-phosphate aminotransferase
1070	 49.91	+1	1469078..1469632	+	184	78189054	-	Cag_1087	-	SpoU rRNA methylase family protein
1071	 42.49	0	1469670..1470455	+	261	78189055	-	Cag_1088	-	alpha/beta fold family hydrolase
1072	 46.18	0	1470466..1471119	-	217	78189056	-	Cag_1089	-	peptidyl-tRNA hydrolase
1073	 45.57	0	1471230..1473656	+	808	78189057	hppA	Cag_1090	-	membrane-bound proton-translocating pyrophosphatase
1074	 40.45	0	1474068..1475036	+	322	78189058	-	Cag_1091	-	hypothetical protein
1075	 52.93	+1	1475323..1478955	-	1210	78189059	-	Cag_1092	-	hypothetical protein
1076	 52.18	+1	1478952..1480256	-	434	78189060	-	Cag_1093	-	putative exonuclease
1077	 48.25	0	1480443..1481729	+	428	78189061	-	Cag_1094	-	hypothetical protein
1078	 45.57	0	1481823..1482149	+	108	78189062	-	Cag_1095	-	SMR drug efflux transporter
1079	 46.28	0	1482157..1483245	+	362	78189063	-	Cag_1096	-	gamma-glutamyl kinase
1080	 30.55	-2	1483498..1484538	+	346	78189064	-	Cag_1097	-	hypothetical protein
1081	 29.90	-2	1484674..1486071	+	465	78189065	-	Cag_1098	-	hypothetical protein
1082	 31.00	-2	1486323..1487564	+	413	78189066	-	Cag_1099	-	DNA modification methylase-like
1083	 34.01	-1	1487671..1488264	+	197	78189067	-	Cag_1100	-	hypothetical protein
1084	 33.17	-2	1488373..1489581	+	402	78189068	-	Cag_1101	-	putative transcriptional regulator
1085	 51.95	+1	1489710..1490966	+	418	78189069	-	Cag_1102	-	gamma-glutamyl phosphate reductase
1086	 34.71	-1	1491093..1491383	+	96	78189070	-	Cag_1103	-	hypothetical protein
1087	 30.83	-2	1491355..1491594	+	79	78189071	-	Cag_1104	-	hypothetical protein
1088	 47.11	0	1492029..1492928	+	299	78189072	-	Cag_1105	-	bacteriochlorophyll/chlorophyll a synthase
1089	 44.91	0	1492925..1493572	+	215	78189073	-	Cag_1106	-	glycosyl transferase
1090	 46.52	0	1493593..1495860	-	755	78189074	-	Cag_1107	-	ComEC/Rec2-related protein
1091	 45.29	0	1496045..1496914	+	289	78189075	-	Cag_1108	-	5,10-methylenetetrahydrofolate reductase
1092	 46.06	0	1497068..1498324	-	418	78189076	-	Cag_1109	-	diaminopimelate decarboxylase
1093	 38.25	-1	1498535..1498717	+	60	78189077	rpmG	Cag_1110	-	50S ribosomal protein L33
1094	 40.45	0	1499073..1499873	+	266	78189078	-	Cag_1111	-	hypothetical protein
1095	 43.91	0	1500740..1501675	+	311	78189079	-	Cag_1112	-	hypothetical protein
44.16	MEAN

5.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.