IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
892	 56.00	0	1280512..1281261	+	249	163846495	-	Caur_0918	-	methyltransferase type 11
893	 55.61	0	1281280..1281894	+	204	163846496	-	Caur_0919	-	methyltransferase type 11
894	 52.14	-1	1281891..1282310	+	139	163846497	-	Caur_0920	-	hypothetical protein
895	 59.64	0	1282352..1284286	+	644	163846498	-	Caur_0921	-	hypothetical protein
896	 56.97	0	1285453..1285854	-	133	163846499	-	Caur_0922	-	CBS domain-containing protein
897	 61.14	+1	1286270..1286938	+	222	163846500	-	Caur_0923	-	phosphatidylserine decarboxylase-related
898	 59.13	0	1286948..1287796	+	282	163846501	-	Caur_0924	-	deaminase-reductase domain-containing protein
899	 51.74	-1	1287832..1288434	+	200	163846502	-	Caur_0925	-	sigma-70 family RNA polymerase sigma factor
900	 60.25	0	1288467..1289183	+	238	163846503	-	Caur_0926	-	putative transmembrane anti-sigma factor
901	 58.99	0	1289248..1290315	-	355	163846504	-	Caur_0927	-	glycoprotease family metalloendopeptidase
902	 55.74	0	1290334..1291074	-	246	163846505	-	Caur_0928	-	alanine racemase domain-containing protein
903	 55.10	0	1291071..1291658	-	195	163846506	-	Caur_0929	-	hypothetical protein
904	 61.95	+1	1291901..1294336	+	811	163846507	-	Caur_0930	-	extracellular ligand-binding receptor
905	 54.24	0	1294418..1295584	+	388	163846508	-	Caur_0931	-	inner-membrane translocator
906	 55.04	0	1295590..1296939	+	449	163846509	-	Caur_0932	-	inner-membrane translocator
907	 52.62	-1	1296942..1297724	+	260	163846510	-	Caur_0933	-	ABC transporter related
908	 53.97	0	1297834..1298550	+	238	163846511	-	Caur_0934	-	ABC transporter related
909	 50.29	-1	1299206..1299889	-	227	163846512	-	Caur_0935	-	response regulator receiver
910	 53.12	0	1299928..1300776	-	282	163846513	-	Caur_0936	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
911	 56.28	0	1300809..1301906	-	365	163846514	-	Caur_0937	-	heat shock protein DnaJ domain-containing protein
912	 56.18	0	1302076..1304469	-	797	163846515	-	Caur_0938	-	cytochrome c assembly protein
913	 52.14	-1	1304549..1304968	-	139	163846516	-	Caur_0939	-	hypothetical protein
914	 56.34	0	1304988..1305200	-	70	163846517	-	Caur_0940	-	hypothetical protein
915	 54.02	0	1305204..1306160	-	318	163846518	-	Caur_0941	-	cytochrome c assembly protein
916	 56.00	0	1306573..1307322	-	249	163846519	-	Caur_0942	-	cytochrome c-type biogenesis protein CcmB
917	 56.21	0	1307342..1307953	-	203	163846520	-	Caur_0943	-	heme exporter protein CcmA
918	 57.46	0	1308723..1311167	-	814	163846521	-	Caur_0944	-	GDSL family lipase
919	 53.90	0	1311357..1313306	-	649	163846522	-	Caur_0945	-	polysaccharide biosynthesis protein CapD
920	 55.61	0	1313508..1314674	-	388	163846523	-	Caur_0946	-	DegT/DnrJ/EryC1/StrS aminotransferase
921	 58.26	0	1314759..1315412	-	217	163846524	-	Caur_0947	-	hexapaptide repeat-containing transferase
922	 56.57	0	1315552..1316205	-	217	163846525	-	Caur_0948	-	undecaprenyl-phosphate galactose phosphotransferase
923	 58.33	0	1316357..1318192	+	611	163846526	-	Caur_0949	-	hypothetical protein
924	 55.26	0	1318401..1318847	+	148	163846527	-	Caur_0950	-	ribosomal protein L9
925	 56.49	0	1318954..1320309	+	451	163846528	-	Caur_0951	-	replicative DNA helicase
926	 55.61	0	1321583..1323319	+	578	163846529	-	Caur_0952	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
927	 55.36	0	1323347..1324195	+	282	163846530	-	Caur_0953	-	pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit
928	 58.09	0	1324832..1326289	-	485	163846531	-	Caur_0954	-	aldehyde dehydrogenase
929	 53.07	0	1326623..1327078	-	151	163846532	-	Caur_0955	-	Fe-S metabolism associated SufE
930	 60.80	+1	1327136..1327459	-	107	163846533	-	Caur_0956	-	hypothetical protein
931	 61.81	+1	1327490..1328230	-	246	163846534	-	Caur_0957	-	hypothetical protein
932	 62.09	+1	1328227..1330344	-	705	163846535	-	Caur_0958	-	hypothetical protein
933	 55.64	0	1330479..1331303	-	274	163846536	-	Caur_0959	-	response regulator receiver
934	 54.49	0	1331493..1332905	+	470	163846537	-	Caur_0960	-	ATPase domain-containing protein
935	 54.50	0	1332932..1333309	-	125	163846538	-	Caur_0961	-	response regulator receiver
936	 58.40	0	1334036..1334386	+	116	163846539	-	Caur_0962	-	hypothetical protein
937	 57.48	0	1334418..1336181	+	587	163846540	-	Caur_0963	-	dynamin family protein
938	 61.35	+1	1336460..1337737	+	425	163846541	-	Caur_0964	-	glycosyl transferase group 1
939	 56.01	0	1337756..1338271	-	171	163846542	-	Caur_0965	-	colicin V production protein
940	 54.98	0	1338578..1340656	+	692	163846543	-	Caur_0966	-	serine protein kinase domain-containing protein
941	 54.48	0	1340750..1341865	+	371	163846544	-	Caur_0967	-	hypothetical protein
942	 57.59	0	1341890..1344214	+	774	163846545	-	Caur_0968	-	SpoVR family protein
943	 57.91	0	1344455..1345402	-	315	163846546	-	Caur_0969	-	ABC transporter related
944	 54.61	0	1345429..1347303	-	624	163846547	-	Caur_0970	-	hypothetical protein
945	 52.42	-1	1347300..1348850	-	516	163846548	-	Caur_0971	-	hypothetical protein
946	 59.94	0	1348889..1349602	-	237	163846549	-	Caur_0972	-	cytidylate kinase
947	 59.47	0	1349636..1351177	-	513	163846550	-	Caur_0973	-	bifunctional GMP synthase/glutamine amidotransferase protein
948	 61.51	+1	1352282..1353853	-	523	163846551	-	Caur_0974	-	histidine ammonia-lyase
949	 61.76	+1	1353892..1355175	-	427	163846552	-	Caur_0975	-	imidazolonepropionase
950	 65.09	+2	1355574..1357223	-	549	163846553	-	Caur_0976	-	urocanate hydratase
951	 59.95	0	1357713..1358501	+	262	163846554	-	Caur_0977	-	hypothetical protein
952	 52.72	-1	1358506..1360635	-	709	163846555	-	Caur_0978	-	heavy metal translocating P-type ATPase
953	 56.98	0	1360674..1362314	-	546	163846556	-	Caur_0979	-	Bilirubin oxidase
954	 52.53	-1	1362354..1362848	-	164	163846557	-	Caur_0980	-	cytochrome c class I
955	 63.33	+1	1363277..1365613	-	778	163846558	-	Caur_0981	-	lytic transglycosylase catalytic
956	 61.13	+1	1367451..1368497	-	348	163846559	-	Caur_0982	-	glycosyl transferase group 1
957	 60.85	+1	1368494..1368871	-	125	163846560	-	Caur_0983	-	hypothetical protein
958	 57.87	0	1368868..1369776	-	302	163846561	-	Caur_0984	-	ATPase
959	 59.04	0	1369840..1370508	-	222	163846562	-	Caur_0985	-	glycosyl transferase family protein
960	 58.72	0	1370529..1371635	-	368	163846563	-	Caur_0986	-	DNA methylase N-4/N-6 domain-containing protein
961	 58.45	0	1371771..1372403	+	210	163846564	-	Caur_0987	-	phage SPO1 DNA polymerase-related protein
962	 59.03	0	1372491..1373027	+	178	163846565	-	Caur_0988	-	hypothetical protein
963	 57.27	0	1373182..1374852	+	556	163846566	-	Caur_0989	-	beta-lactamase domain-containing protein
964	 55.08	0	1374900..1375460	-	186	163846567	-	Caur_0990	-	deoxycytidine triphosphate deaminase
965	 61.04	+1	1375560..1376660	-	366	163846568	-	Caur_0991	-	glycosyl transferase group 1
966	 60.37	0	1376829..1377209	-	126	163846569	-	Caur_0992	-	glyoxalase/bleomycin resistance protein/dioxygenase
967	 60.20	0	1377202..1378284	-	360	163846570	-	Caur_0993	-	phosphoserine aminotransferase
968	 62.15	+1	1378371..1379654	+	427	163846571	-	Caur_0994	-	amine oxidase
969	 65.20	+2	1379729..1380343	+	204	163846572	-	Caur_0995	-	SH3 type 3 domain-containing protein
970	 60.35	0	1380704..1381954	-	416	163846573	-	Caur_0996	-	hypothetical protein
971	 59.83	0	1381991..1382794	-	267	163846574	-	Caur_0997	-	ABC transporter related
972	 63.15	+1	1382819..1384579	-	586	163846575	-	Caur_0998	-	RND family efflux transporter MFP subunit
973	 56.90	0	1384576..1385220	-	214	163846576	-	Caur_0999	-	regulatory protein TetR
974	 55.06	0	1386363..1386698	-	111	163846577	-	Caur_1000	-	hypothetical protein
975	 56.74	0	1386882..1387163	-	93	163846578	-	Caur_1001	-	hypothetical protein
976	 59.46	0	1388274..1389689	+	471	163846579	-	Caur_1002	-	ammonium transporter
977	 56.88	0	1389745..1390551	-	268	163846580	-	Caur_1003	-	integral membrane protein
978	 61.84	+1	1391568..1391774	+	68	163846581	-	Caur_1004	-	hypothetical protein
979	 56.17	0	1391786..1392166	+	126	163846582	-	Caur_1005	-	hypothetical protein
980	 58.47	0	1392150..1392515	+	121	163846583	-	Caur_1006	-	hypothetical protein
981	 59.98	0	1392557..1394290	+	577	163846584	-	Caur_1007	-	hypothetical protein
982	 60.92	+1	1394836..1395636	-	266	163846585	-	Caur_1008	-	alpha/beta hydrolase fold-containing protein
983	 52.86	-1	1396068..1396697	-	209	163846586	-	Caur_1009	-	hypothetical protein
984	 57.17	0	1397077..1398045	-	322	163846587	-	Caur_1010	-	cytochrome oxidase assembly
985	 57.28	0	1398202..1399533	+	443	163846588	-	Caur_1011	-	peptidase M20
986	 52.68	-1	1399734..1400069	-	111	163846589	-	Caur_1012	-	anti-anti-sigma factor
987	 54.73	0	1400240..1401931	-	563	163846590	-	Caur_1013	-	stage II sporulation E family protein
988	 58.88	0	1401940..1403031	-	363	163846591	-	Caur_1014	-	HEAT repeat-containing PBS lyase
989	 48.44	-2	1403219..1403410	+	63	163846592	-	Caur_1015	-	hypothetical protein
990	 56.37	0	1404009..1407755	+	1248	163846593	-	Caur_1016	-	DNA polymerase III, alpha subunit
991	 58.55	0	1408850..1410919	+	689	163846594	-	Caur_1017	-	molybdopterin oxidoreductase
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.