IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
790	 60.56	+1	1106825..1107544	-	239	163846393	-	Caur_0810	-	glycerophosphoryl diester phosphodiesterase
791	 55.20	0	1107653..1107931	-	92	163846394	-	Caur_0811	-	zinc finger SWIM domain-containing protein
792	 60.53	+1	1108201..1108917	-	238	163846395	-	Caur_0812	-	hypothetical protein
793	 52.86	-1	1108914..1109507	-	197	163846396	-	Caur_0813	-	electron transport protein SCO1/SenC
794	 60.72	+1	1111864..1112670	+	268	163846397	-	Caur_0816	-	binding-protein-dependent transport systems inner membrane component
795	 57.48	0	1112702..1113757	+	351	163846398	-	Caur_0817	-	NMT1/THI5-like domain-containing protein
796	 50.90	-1	1114016..1115233	+	405	163846399	-	Caur_0818	-	ATPase-like protein
797	 50.65	-1	1115230..1115922	+	230	163846400	-	Caur_0819	-	hypothetical protein
798	 56.71	0	1116156..1116788	-	210	163846401	-	Caur_0820	-	regulatory protein TetR
799	 62.60	+1	1116818..1118317	-	499	163846402	-	Caur_0821	-	secretion protein HlyD family protein
800	 59.06	0	1118331..1119014	-	227	163846403	-	Caur_0822	-	ABC transporter related
801	 60.01	0	1119043..1121475	-	810	163846404	-	Caur_0823	-	hypothetical protein
802	 60.70	+1	1121541..1123718	-	725	163846405	-	Caur_0824	-	RecD/TraA family helicase
803	 63.51	+1	1124848..1125828	-	326	163846406	-	Caur_0825	-	glyoxylate reductase
804	 59.94	0	1125832..1126530	-	232	163846407	-	Caur_0826	-	hypothetical protein
805	 57.96	0	1126527..1126997	-	156	163846408	-	Caur_0827	-	GCN5-related N-acetyltransferase
806	 57.47	0	1128487..1129236	-	249	163846409	-	Caur_0829	-	hypothetical protein
807	 60.64	+1	1129797..1131638	+	613	163846410	-	Caur_0830	-	GTP-binding protein TypA
808	 62.00	+1	1131935..1132876	+	313	163846411	-	Caur_0831	-	sigma-70 family RNA polymerase sigma factor
809	 65.80	+2	1133599..1133943	+	114	163846412	-	Caur_0832	-	hypothetical protein
810	 57.63	0	1134569..1136173	+	534	163846413	-	Caur_0834	-	hypothetical protein
811	 63.39	+1	1136196..1136867	+	223	163846414	-	Caur_0835	-	NB-ARC domain-containing protein
812	 58.43	0	1138011..1139054	+	347	163846415	-	Caur_0837	-	hypothetical protein
813	 62.02	+1	1139058..1139552	-	164	163846416	-	Caur_0838	-	thioesterase superfamily protein
814	 64.23	+2	1141833..1142897	+	354	163846417	-	Caur_0839	-	NADH:flavin oxidoreductase/NADH oxidase
815	 64.47	+2	1142919..1145792	+	957	163846418	-	Caur_0840	-	helicase domain-containing protein
816	 62.99	+1	1145814..1150325	+	1503	163846419	-	Caur_0841	-	hypothetical protein
817	 57.78	0	1153606..1154640	-	344	163846420	-	Caur_0842	-	Sulfate transporter/antisigma-factor antagonist STAS
818	 58.85	0	1155198..1156169	+	323	163846421	-	Caur_0843	-	UbiA prenyltransferase
819	 56.98	0	1156166..1157590	-	474	163846422	-	Caur_0844	-	glutamine synthetase catalytic region
820	 57.07	0	1159745..1160296	-	183	163846423	-	Caur_0845	-	cytochrome c class I
821	 59.58	0	1162250..1162630	-	126	163846424	-	Caur_0846	-	ferredoxin
822	 55.79	0	1162781..1164196	-	471	163846425	-	Caur_0847	-	protein-glutamate O-methyltransferase
823	 54.50	0	1164393..1165436	-	347	163846426	-	Caur_0848	-	protein-glutamate methylesterase
824	 51.01	-1	1165529..1165975	-	148	163846427	-	Caur_0849	-	CheW domain-containing protein
825	 47.97	-2	1166031..1166399	-	122	163846428	-	Caur_0850	-	hypothetical protein
826	 54.95	0	1166409..1168670	-	753	163846429	-	Caur_0851	-	response regulator receiver
827	 55.71	0	1168801..1170297	-	498	163846430	-	Caur_0852	-	chemotaxis sensory transducer
828	 48.46	-2	1170270..1170659	-	129	163846431	-	Caur_0853	-	ligand-binding sensor domain-containing protein
829	 53.91	0	1170680..1171063	-	127	163846432	-	Caur_0854	-	response regulator receiver
830	 58.57	0	1171085..1171615	-	176	163846433	-	Caur_0855	-	CheW domain-containing protein
831	 58.15	0	1171814..1172764	-	316	163846434	-	Caur_0856	-	selenide, water dikinase
832	 52.60	-1	1173538..1175499	-	653	163846435	-	Caur_0857	-	PAS sensor protein
833	 57.63	0	1176292..1176756	-	154	163846436	-	Caur_0858	-	CBS domain-containing protein
834	 58.82	0	1177059..1178027	+	322	163846437	-	Caur_0859	-	glutamine cyclotransferase
835	 61.06	+1	1178072..1178785	+	237	163846438	-	Caur_0860	-	peptidylprolyl isomerase FKBP-type
836	 61.71	+1	1178785..1179894	+	369	163846439	-	Caur_0861	-	mandelate racemase/muconate lactonizing protein
837	 60.94	+1	1179910..1180572	+	220	163846440	-	Caur_0862	-	hypothetical protein
838	 58.56	0	1180591..1181244	+	217	163846441	-	Caur_0863	-	hypothetical protein
839	 59.55	0	1181636..1182478	-	280	163846442	-	Caur_0864	-	putative RNA methylase
840	 59.14	0	1182587..1183729	-	380	163846443	-	Caur_0865	-	carbamoyl-phosphate synthase, small subunit
841	 63.15	+1	1184044..1185153	+	369	163846444	-	Caur_0866	-	glycosyl transferase group 1
842	 60.36	0	1185208..1186554	+	448	163846445	-	Caur_0867	-	peptidase M20
843	 60.36	0	1186998..1189184	-	728	163846446	-	Caur_0868	-	heavy metal translocating P-type ATPase
844	 58.51	0	1189462..1191705	+	747	163846447	-	Caur_0869	-	6-phosphofructokinase
845	 57.63	0	1195772..1196302	-	176	163846448	-	Caur_0870	-	single-strand binding protein
846	 56.27	0	1196461..1196739	-	92	163846449	-	Caur_0871	-	AsnC/Lrp family regulatory protein
847	 56.30	0	1196827..1198794	-	655	163846450	-	Caur_0872	-	hypothetical protein
848	 57.71	0	1198894..1203405	-	1503	163846451	-	Caur_0873	-	DNA-directed RNA polymerase, beta' subunit
849	 56.62	0	1203702..1207385	-	1227	163846452	-	Caur_0874	-	DNA-directed RNA polymerase, beta subunit
850	 60.24	0	1207969..1209369	-	466	163846453	-	Caur_0875	-	histidine kinase
851	 57.69	0	1209393..1210094	-	233	163846454	-	Caur_0876	-	response regulator receiver
852	 63.69	+1	1210198..1210668	-	156	163846455	-	Caur_0877	-	hypothetical protein
853	 60.68	+1	1210792..1213779	-	995	163846456	-	Caur_0878	-	hypothetical protein
854	 58.54	0	1213991..1219957	-	1988	163846457	-	Caur_0879	-	alpha-1,6-glucosidase, pullulanase-type
855	 60.90	+1	1220361..1221296	-	311	163846458	-	Caur_0880	-	mevalonate kinase
856	 59.19	0	1221300..1223882	-	860	163846459	-	Caur_0881	-	phenylalanyl-tRNA synthetase, beta subunit
857	 59.01	0	1224237..1224980	+	247	163846460	-	Caur_0882	-	hypothetical protein
858	 60.40	0	1225352..1225846	-	164	163846461	-	Caur_0883	-	hypothetical protein
859	 61.18	+1	1226549..1227004	+	151	163846462	-	Caur_0884	-	hypothetical protein
860	 60.07	0	1227783..1229117	+	444	163846463	-	Caur_0885	-	hypothetical protein
861	 60.21	0	1229158..1231062	+	634	163846464	-	Caur_0886	-	N-acetylmuramoyl-L-alanine amidase
862	 56.64	0	1231109..1232185	+	358	163846465	-	Caur_0887	-	tubulin/FtsZ GTPase
863	 57.67	0	1232182..1233048	+	288	163846466	-	Caur_0888	-	hypothetical protein
864	 58.54	0	1233518..1234723	-	401	163846467	-	Caur_0889	-	glycosyl transferase family protein
865	 56.51	0	1234720..1235832	-	370	163846468	-	Caur_0890	-	glycosyl transferase group 1
866	 59.64	0	1235829..1236953	-	374	163846469	-	Caur_0891	-	glycosyl transferase group 1
867	 61.92	+1	1237490..1239469	+	659	163846470	-	Caur_0892	-	hypothetical protein
868	 60.99	+1	1239471..1240316	-	281	163846471	-	Caur_0893	-	nicotinate-nucleotide pyrophosphorylase
869	 56.55	0	1240849..1244457	+	1202	163846472	-	Caur_0894	-	ATPase domain-containing protein
870	 59.67	0	1244511..1245410	-	299	163846473	-	Caur_0895	-	hypothetical protein
871	 62.91	+1	1246014..1249283	-	1089	163846474	-	Caur_0896	-	hypothetical protein
872	 57.58	0	1251101..1251529	-	142	163846475	-	Caur_0897	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
873	 61.74	+1	1251559..1252431	-	290	163846476	-	Caur_0898	-	dimethyladenosine transferase
874	 53.34	0	1252428..1254221	-	597	163846477	-	Caur_0899	-	ATPase domain-containing protein
875	 56.02	0	1254283..1255212	-	309	163846478	-	Caur_0900	-	malate dehydrogenase, NAD-dependent
876	 58.25	0	1255300..1256250	-	316	163846479	-	Caur_0901	-	RluA family pseudouridine synthase
877	 53.68	0	1256247..1256831	-	194	163846480	-	Caur_0902	-	lipoprotein signal peptidase
878	 49.61	-1	1256828..1257337	-	169	163846481	-	Caur_0903	-	lipoprotein signal peptidase
879	 59.36	0	1258998..1259750	-	250	163846482	-	Caur_0904	-	hypothetical protein
880	 61.27	+1	1259786..1260712	-	308	163846483	-	Caur_0905	-	hypothetical protein
881	 61.90	+1	1262753..1264012	-	419	163846484	-	Caur_0907	-	ATPase involved in chromosome partitioning-like protein
882	 60.95	+1	1264088..1265293	-	401	163846485	-	Caur_0908	-	type II secretion system protein E
883	 60.25	0	1267346..1268155	-	269	163846486	-	Caur_0909	-	SAF domain-containing protein
884	 56.92	0	1268180..1268692	-	170	163846487	-	Caur_0910	-	hypothetical protein
885	 59.37	0	1268702..1269112	-	136	163846488	-	Caur_0911	-	TadE family protein
886	 54.08	0	1269677..1274230	-	1517	163846489	-	Caur_0912	-	hypothetical protein
887	 49.34	-2	1274327..1275394	-	355	163846490	-	Caur_0913	-	hypothetical protein
888	 56.98	0	1275414..1276703	-	429	163846491	-	Caur_0914	-	phosphoesterase PA-phosphatase related
889	 57.55	0	1277763..1278596	+	277	163846492	-	Caur_0915	-	hypothetical protein
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.