IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
659	 56.13	0	916184..916534	+	116	163846262	-	Caur_0677	-	PemK family protein
660	 62.60	+1	916567..918876	+	769	163846263	-	Caur_0678	-	D-lactate dehydrogenase (cytochrome)
661	 63.49	+1	918873..919658	+	261	163846264	-	Caur_0679	-	tRNA/rRNA methyltransferase (SpoU)
662	 57.81	0	920798..921418	-	206	163846265	-	Caur_0680	-	lysine exporter protein LysE/YggA
663	 58.86	0	922145..922669	+	174	163846266	-	Caur_0681	-	hypothetical protein
664	 58.42	0	922728..924146	-	472	163846267	-	Caur_0682	-	PUCC protein
665	 59.80	0	924513..925313	+	266	163846268	-	Caur_0683	-	tryptophan synthase, alpha subunit
666	 55.13	0	925333..925566	+	77	163846269	-	Caur_0684	-	AsnC/Lrp family regulatory protein
667	 56.26	0	925594..926535	+	313	163846270	-	Caur_0685	-	acetamidase/formamidase
668	 56.09	0	926622..928295	-	557	163846271	-	Caur_0686	-	sulfite reductase subunit beta
669	 60.10	0	928329..929135	-	268	163846272	-	Caur_0687	-	uroporphyrin-III C-methyltransferase
670	 56.98	0	929132..929812	-	226	163846273	-	Caur_0688	-	siroheme synthase
671	 57.76	0	929825..930565	-	246	163846274	-	Caur_0689	-	hypothetical protein
672	 56.20	0	930582..931727	-	381	163846275	-	Caur_0690	-	sulfate adenylyltransferase
673	 57.96	0	931741..932406	-	221	163846276	-	Caur_0691	-	phosphoadenosine phosphosulfate reductase
674	 55.56	0	932403..932969	-	188	163846277	-	Caur_0692	-	adenylylsulfate kinase
675	 58.73	0	934359..934610	+	83	163846278	-	Caur_0694	-	hypothetical protein
676	 60.46	+1	935546..940846	+	1766	163846279	-	Caur_0695	-	TPR repeat-containing protein
677	 54.02	0	940914..941261	+	115	163846280	-	Caur_0696	-	roadblock/LC7 family protein
678	 58.11	0	941391..941846	+	151	163846281	-	Caur_0697	-	nucleoside-diphosphate kinase
679	 56.61	0	941928..942971	+	347	163846282	-	Caur_0698	-	phospho-2-dehydro-3-deoxyheptonate aldolase
680	 54.93	0	943222..944346	+	374	163846283	-	Caur_0699	-	cell cycle protein
681	 57.70	0	944397..945299	-	300	163846284	-	Caur_0700	-	ribokinase-like domain-containing protein
682	 56.82	0	945422..946213	+	263	163846285	-	Caur_0701	-	deoxyribose-phosphate aldolase
683	 58.56	0	946262..947149	+	295	163846286	-	Caur_0702	-	succinyl-CoA synthetase, alpha subunit
684	 55.68	0	947423..949060	-	545	163846287	-	Caur_0703	-	GAF domain-containing protein
685	 52.16	-1	949190..949513	+	107	163846288	-	Caur_0704	-	Rieske (2Fe-2S) domain-containing protein
686	 57.37	0	949836..953975	+	1379	163846289	-	Caur_0705	-	alpha amylase catalytic region
687	 53.06	-1	954144..954437	+	97	163846290	-	Caur_0706	-	PspC domain-containing protein
688	 57.31	0	954604..955383	-	259	163846291	-	Caur_0707	-	metallophosphoesterase
689	 58.18	0	957171..959999	+	942	163846292	-	Caur_0708	-	hypothetical protein
690	 62.49	+1	960016..961260	+	414	163846293	-	Caur_0709	-	glycosyl transferase group 1
691	 61.41	+1	961257..963236	+	659	163846294	-	Caur_0710	-	membrane protein-like protein
692	 62.54	+1	963226..965505	+	759	163846295	-	Caur_0711	-	hypothetical protein
693	 63.16	+1	965542..967680	+	712	163846296	-	Caur_0712	-	tetratricopeptide TPR_4
694	 62.60	+1	967677..969719	+	680	163846297	-	Caur_0713	-	tetratricopeptide TPR_4
695	 64.77	+2	969967..971499	+	510	163846298	-	Caur_0714	-	deoxyribodipyrimidine photo-lyase
696	 57.87	0	971494..971982	-	162	163846299	-	Caur_0715	-	hypothetical protein
697	 57.74	0	973485..975533	+	682	163846300	-	Caur_0716	-	peptidase S8 and S53 subtilisin kexin sedolisin
698	 63.88	+1	978673..981072	-	799	163846301	-	Caur_0718	-	helix-turn-helix domain-containing protein
699	 63.59	+1	981589..982206	+	205	163846302	-	Caur_0719	-	hypothetical protein
700	 60.16	0	982212..985793	+	1193	163846303	-	Caur_0720	-	hypothetical protein
701	 45.34	-2	986190..987080	+	296	163846304	-	Caur_0721	-	D12 class N6 adenine-specific DNA methyltransferase
702	 49.37	-2	987092..989086	+	664	163846305	-	Caur_0722	-	hypothetical protein
703	 46.84	-2	989091..990482	+	463	163846306	-	Caur_0723	-	hypothetical protein
704	 55.14	0	990479..993115	+	878	163846307	-	Caur_0724	-	UvrD/REP helicase
705	 54.33	0	993145..993963	+	272	163846308	-	Caur_0725	-	hypothetical protein
706	 54.79	0	994168..994605	-	145	163846309	-	Caur_0726	-	thioesterase superfamily protein
707	 52.15	-1	994728..995099	+	123	163846310	-	Caur_0727	-	response regulator receiver
708	 53.62	0	995038..995589	-	183	163846311	-	Caur_0728	-	histidine triad (HIT) protein
709	 58.49	0	995589..996530	-	313	163846312	-	Caur_0729	-	peptide chain release factor 2
710	 59.91	0	996859..997983	+	374	163846313	-	Caur_0730	-	ErfK/YbiS/YcfS/YnhG family protein
711	 58.66	0	998220..999356	-	378	163846314	-	Caur_0731	-	peptidase M23B
712	 60.42	0	999933..1000781	+	282	163846315	-	Caur_0732	-	low molecular weight phosphotyrosine protein phosphatase
713	 57.97	0	1000782..1001966	-	394	163846316	-	Caur_0733	-	chromate transporter
714	 57.69	0	1001978..1002790	-	270	163846317	-	Caur_0734	-	HhH-GPD family protein
715	 55.88	0	1002844..1004994	-	716	163846318	-	Caur_0735	-	alpha-glucan phosphorylase
716	 61.63	+1	1006111..1008075	+	654	163846319	-	Caur_0736	-	hypothetical protein
717	 55.60	0	1009684..1011075	+	463	163846320	-	Caur_0737	-	selenium-binding protein
718	 59.57	0	1011247..1011894	+	215	163846321	-	Caur_0738	-	hypothetical protein
719	 56.43	0	1012749..1013207	+	152	163846322	-	Caur_0739	-	hypothetical protein
720	 56.74	0	1013204..1014271	+	355	163846323	-	Caur_0740	-	methyltransferase type 11
721	 61.39	+1	1014268..1015443	+	391	163846324	-	Caur_0741	-	GCN5-related N-acetyltransferase
722	 59.85	0	1015496..1016536	+	346	163846325	-	Caur_0742	-	glycosyl transferase group 1
723	 55.85	0	1017305..1018201	-	298	163846326	-	Caur_0743	-	prolipoprotein diacylglyceryl transferase
724	 58.30	0	1018345..1019109	-	254	163846327	-	Caur_0744	-	phosphoribosylformylglycinamidine synthase I
725	 56.62	0	1019100..1020482	-	460	163846328	-	Caur_0745	-	protein kinase
726	 58.02	0	1021434..1021919	+	161	163846329	-	Caur_0746	-	SH3 type 3 domain-containing protein
727	 56.56	0	1022022..1023218	+	398	163846330	-	Caur_0747	-	cysteinyl-tRNA synthetase
728	 58.50	0	1023319..1024506	-	395	163846331	-	Caur_0748	-	cell division protein FtsZ
729	 57.45	0	1024531..1025778	-	415	163846332	-	Caur_0749	-	cell division protein FtsA
730	 53.48	0	1025812..1026630	-	272	163846333	-	Caur_0750	-	polypeptide-transport-associated domain-containing protein
731	 59.48	0	1026643..1027713	-	356	163846334	-	Caur_0751	-	D-alanine--D-alanine ligase
732	 57.61	0	1027857..1028750	-	297	163846335	-	Caur_0752	-	UDP-N-acetylenolpyruvoylglucosamine reductase
733	 61.47	+1	1028752..1030176	-	474	163846336	-	Caur_0753	-	UDP-N-acetylmuramate--alanine ligase
734	 49.46	-1	1030173..1030817	-	214	163846337	-	Caur_0754	-	hypothetical protein
735	 60.61	+1	1030814..1031968	-	384	163846338	-	Caur_0755	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
736	 54.59	0	1031877..1033151	-	424	163846339	-	Caur_0756	-	cell division protein FtsW
737	 55.88	0	1033199..1034014	-	271	163846340	-	Caur_0757	-	rhomboid family protein
738	 60.17	0	1033998..1035413	-	471	163846341	-	Caur_0758	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
739	 55.80	0	1035413..1036516	-	367	163846342	-	Caur_0759	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
740	 59.09	0	1036513..1037964	-	483	163846343	-	Caur_0760	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
741	 58.03	0	1038149..1039966	-	605	163846344	-	Caur_0761	-	peptidoglycan glycosyltransferase
742	 55.28	0	1039973..1040341	-	122	163846345	-	Caur_0762	-	hypothetical protein
743	 58.94	0	1040365..1041270	-	301	163846346	-	Caur_0763	-	S-adenosyl-methyltransferase MraW
744	 56.48	0	1041270..1041701	-	143	163846347	-	Caur_0764	-	MraZ protein
745	 58.13	0	1041916..1042407	+	163	163846348	-	Caur_0765	-	molybdenum cofactor biosynthesis protein C
746	 54.98	0	1043350..1043640	+	96	163846349	-	Caur_0766	-	hypothetical protein
747	 55.12	0	1044027..1044329	+	100	163846350	-	Caur_0767	-	hypothetical protein
748	 57.95	0	1047251..1047514	-	87	163846351	-	Caur_0768	-	hypothetical protein
749	 62.19	+1	1047501..1048259	-	252	163846352	-	Caur_0769	-	xanthine and Co dehydrogenase maturation factor
750	 57.69	0	1048286..1048597	-	103	163846353	-	Caur_0770	-	hypothetical protein
751	 56.98	0	1048918..1051074	-	718	163846354	-	Caur_0771	-	TRAP transporter, 4TM/12TM fusion protein
752	 57.78	0	1051164..1052018	-	284	163846355	-	Caur_0772	-	TRAP transporter solute receptor TAXI family protein
753	 59.64	0	1052317..1053198	+	293	163846356	-	Caur_0773	-	alpha/beta hydrolase fold-containing protein
754	 59.62	0	1053201..1053938	-	245	163846357	-	Caur_0774	-	hypothetical protein
755	 58.77	0	1053941..1055131	-	396	163846358	-	Caur_0775	-	VWA containing CoxE family protein
756	 59.75	0	1055257..1056138	-	293	163846359	-	Caur_0776	-	hypothetical protein
757	 58.87	0	1057508..1058533	-	341	163846360	-	Caur_0777	-	response regulator receiver/SARP domain-containing protein
758	 65.87	+2	1058538..1061561	-	1007	163846361	-	Caur_0778	-	helicase
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.