IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
600	 56.80	0	828184..828690	+	168	163846203	-	Caur_0618	-	hypothetical protein
601	 64.90	+2	829107..830468	-	453	163846204	-	Caur_0619	-	hydroxypyruvate reductase
602	 57.43	0	830461..831543	-	360	163846205	-	Caur_0620	-	translation-associated GTPase
603	 52.12	-1	832174..832833	+	219	163846206	-	Caur_0621	-	hypothetical protein
604	 56.70	0	832906..835995	+	1029	163846207	-	Caur_0622	-	Fe-S-cluster-containing hydrogenase components 1-like protein
605	 56.81	0	835998..837458	+	486	163846208	-	Caur_0623	-	polysulphide reductase NrfD
606	 53.15	0	837472..838011	+	179	163846209	-	Caur_0624	-	transmembrane prediction
607	 53.72	0	838021..838638	+	205	163846210	-	Caur_0625	-	hypothetical protein
608	 56.80	0	838657..839892	+	411	163846211	-	Caur_0626	-	hypothetical protein
609	 55.46	0	839911..840249	+	112	163846212	-	Caur_0627	-	hypothetical protein
610	 52.16	-1	842060..842521	-	153	163846213	-	Caur_0628	-	hypothetical protein
611	 58.07	0	843733..844977	+	414	163846214	-	Caur_0629	-	phosphoribosylamine--glycine ligase
612	 60.10	0	844981..845604	+	207	163846215	-	Caur_0630	-	phosphoribosylglycinamide formyltransferase
613	 58.18	0	845631..847304	-	557	163846216	-	Caur_0631	-	hypothetical protein
614	 57.58	0	847403..847798	-	131	163846217	-	Caur_0632	-	diacylglycerol kinase
615	 57.17	0	847908..848549	+	213	163846218	-	Caur_0633	-	phosphoglycerate mutase
616	 55.67	0	848707..850161	-	484	163846219	-	Caur_0634	-	hypothetical protein
617	 57.94	0	850422..851498	+	358	163846220	-	Caur_0635	-	hypothetical protein
618	 57.56	0	851598..853946	+	782	163846221	-	Caur_0636	-	iron permease FTR1
619	 59.47	0	853980..854882	+	300	163846222	-	Caur_0637	-	nitroreductase
620	 54.63	0	855001..857343	-	780	163846223	-	Caur_0638	-	hypothetical protein
621	 58.14	0	857423..858196	-	257	163846224	-	Caur_0639	-	hypothetical protein
622	 54.02	0	858764..861103	-	779	163846225	-	Caur_0640	-	hypothetical protein
623	 62.39	+1	861130..861900	-	256	163846226	-	Caur_0641	-	hypothetical protein
624	 57.76	0	861940..863208	-	422	163846227	-	Caur_0642	-	glycosyl transferase group 1
625	 54.86	0	863262..864125	-	287	163846228	-	Caur_0643	-	methyltransferase type 11
626	 56.55	0	865066..866439	+	457	163846229	-	Caur_0644	-	oxygen-independent coproporphyrinogen III oxidase
627	 60.42	0	866452..867876	+	474	163846230	-	Caur_0645	-	protoporphyrinogen oxidase
628	 45.98	-2	868374..869045	+	223	163846231	-	Caur_0646	-	hypothetical protein
629	 50.18	-1	869495..873133	+	1212	163846232	-	Caur_0647	-	NHL repeat-containing protein
630	 55.24	0	875189..878311	-	1040	163846233	-	Caur_0648	-	PA14 domain-containing protein
631	 57.17	0	878332..882552	-	1406	163846234	-	Caur_0649	-	peptidase S8 and S53 subtilisin kexin sedolisin
632	 52.33	-1	883268..886672	-	1134	163846235	-	Caur_0650	-	fibronectin type III domain-containing protein
633	 57.11	0	886931..888091	-	386	163846236	-	Caur_0651	-	monogalactosyldiacylglycerol synthase
634	 55.96	0	888084..889223	-	379	163846237	-	Caur_0652	-	monogalactosyldiacylglycerol synthase
635	 46.63	-2	889706..890194	+	162	163846238	-	Caur_0653	-	hypothetical protein
636	 64.45	+2	890541..891173	+	210	163846239	-	Caur_0654	-	hypothetical protein
637	 58.33	0	891163..892074	+	303	163846240	-	Caur_0655	-	putative esterase
638	 60.03	0	892071..893471	+	466	163846241	-	Caur_0656	-	histidine kinase dimerisation and phosphoacceptor region
639	 56.60	0	893571..894494	+	307	163846242	-	Caur_0657	-	hypothetical protein
640	 47.63	-2	894782..895795	+	337	163846243	-	Caur_0658	-	DNA methylase N-4/N-6 domain-containing protein
641	 39.64	-2	895792..896742	+	316	163846244	-	Caur_0659	-	hypothetical protein
642	 56.42	0	896763..897416	-	217	163846245	-	Caur_0660	-	response regulator receiver
643	 57.71	0	897714..898952	-	412	163846246	-	Caur_0661	-	histidine kinase dimerisation and phosphoacceptor region
644	 55.97	0	898949..899902	-	317	163846247	-	Caur_0662	-	hypothetical protein
645	 59.75	0	900251..902116	+	621	163846248	-	Caur_0663	-	peptidase M1 membrane alanine aminopeptidase
646	 57.97	0	902531..902806	-	91	163846249	-	Caur_0664	-	histone family protein DNA-binding protein
647	 55.18	0	902998..903528	-	176	163846250	-	Caur_0665	-	small GTP-binding protein
648	 54.74	0	903560..904372	-	270	163846251	-	Caur_0666	-	hypothetical protein
649	 55.56	0	904410..905381	-	323	163846252	-	Caur_0667	-	hypothetical protein
650	 55.41	0	905539..905991	-	150	163846253	-	Caur_0668	-	hypothetical protein
651	 57.36	0	906058..906315	-	85	163846254	-	Caur_0669	-	hypothetical protein
652	 59.26	0	906312..907391	-	359	163846255	-	Caur_0670	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
653	 59.37	0	907502..908323	+	273	163846256	-	Caur_0671	-	alpha/beta hydrolase fold-containing protein
654	 56.05	0	908666..909475	+	269	163846257	-	Caur_0672	-	alpha/beta hydrolase fold-containing protein
655	 60.05	0	909635..911326	+	563	163846258	-	Caur_0673	-	AMP-dependent synthetase and ligase
656	 57.10	0	911614..913128	+	504	163846259	-	Caur_0674	-	band 7 protein
657	 59.71	0	913125..914360	+	411	163846260	-	Caur_0675	-	band 7 protein
658	 57.76	0	914929..916197	+	422	163846261	-	Caur_0676	-	helix-turn-helix domain-containing protein
659	 56.13	0	916184..916534	+	116	163846262	-	Caur_0677	-	PemK family protein
660	 62.60	+1	916567..918876	+	769	163846263	-	Caur_0678	-	D-lactate dehydrogenase (cytochrome)
661	 63.49	+1	918873..919658	+	261	163846264	-	Caur_0679	-	tRNA/rRNA methyltransferase (SpoU)
662	 57.81	0	920798..921418	-	206	163846265	-	Caur_0680	-	lysine exporter protein LysE/YggA
663	 58.86	0	922145..922669	+	174	163846266	-	Caur_0681	-	hypothetical protein
664	 58.42	0	922728..924146	-	472	163846267	-	Caur_0682	-	PUCC protein
665	 59.80	0	924513..925313	+	266	163846268	-	Caur_0683	-	tryptophan synthase, alpha subunit
666	 55.13	0	925333..925566	+	77	163846269	-	Caur_0684	-	AsnC/Lrp family regulatory protein
667	 56.26	0	925594..926535	+	313	163846270	-	Caur_0685	-	acetamidase/formamidase
668	 56.09	0	926622..928295	-	557	163846271	-	Caur_0686	-	sulfite reductase subunit beta
669	 60.10	0	928329..929135	-	268	163846272	-	Caur_0687	-	uroporphyrin-III C-methyltransferase
670	 56.98	0	929132..929812	-	226	163846273	-	Caur_0688	-	siroheme synthase
671	 57.76	0	929825..930565	-	246	163846274	-	Caur_0689	-	hypothetical protein
672	 56.20	0	930582..931727	-	381	163846275	-	Caur_0690	-	sulfate adenylyltransferase
673	 57.96	0	931741..932406	-	221	163846276	-	Caur_0691	-	phosphoadenosine phosphosulfate reductase
674	 55.56	0	932403..932969	-	188	163846277	-	Caur_0692	-	adenylylsulfate kinase
675	 58.73	0	934359..934610	+	83	163846278	-	Caur_0694	-	hypothetical protein
676	 60.46	+1	935546..940846	+	1766	163846279	-	Caur_0695	-	TPR repeat-containing protein
677	 54.02	0	940914..941261	+	115	163846280	-	Caur_0696	-	roadblock/LC7 family protein
678	 58.11	0	941391..941846	+	151	163846281	-	Caur_0697	-	nucleoside-diphosphate kinase
679	 56.61	0	941928..942971	+	347	163846282	-	Caur_0698	-	phospho-2-dehydro-3-deoxyheptonate aldolase
680	 54.93	0	943222..944346	+	374	163846283	-	Caur_0699	-	cell cycle protein
681	 57.70	0	944397..945299	-	300	163846284	-	Caur_0700	-	ribokinase-like domain-containing protein
682	 56.82	0	945422..946213	+	263	163846285	-	Caur_0701	-	deoxyribose-phosphate aldolase
683	 58.56	0	946262..947149	+	295	163846286	-	Caur_0702	-	succinyl-CoA synthetase, alpha subunit
684	 55.68	0	947423..949060	-	545	163846287	-	Caur_0703	-	GAF domain-containing protein
685	 52.16	-1	949190..949513	+	107	163846288	-	Caur_0704	-	Rieske (2Fe-2S) domain-containing protein
686	 57.37	0	949836..953975	+	1379	163846289	-	Caur_0705	-	alpha amylase catalytic region
687	 53.06	-1	954144..954437	+	97	163846290	-	Caur_0706	-	PspC domain-containing protein
688	 57.31	0	954604..955383	-	259	163846291	-	Caur_0707	-	metallophosphoesterase
689	 58.18	0	957171..959999	+	942	163846292	-	Caur_0708	-	hypothetical protein
690	 62.49	+1	960016..961260	+	414	163846293	-	Caur_0709	-	glycosyl transferase group 1
691	 61.41	+1	961257..963236	+	659	163846294	-	Caur_0710	-	membrane protein-like protein
692	 62.54	+1	963226..965505	+	759	163846295	-	Caur_0711	-	hypothetical protein
693	 63.16	+1	965542..967680	+	712	163846296	-	Caur_0712	-	tetratricopeptide TPR_4
694	 62.60	+1	967677..969719	+	680	163846297	-	Caur_0713	-	tetratricopeptide TPR_4
695	 64.77	+2	969967..971499	+	510	163846298	-	Caur_0714	-	deoxyribodipyrimidine photo-lyase
696	 57.87	0	971494..971982	-	162	163846299	-	Caur_0715	-	hypothetical protein
697	 57.74	0	973485..975533	+	682	163846300	-	Caur_0716	-	peptidase S8 and S53 subtilisin kexin sedolisin
698	 63.88	+1	978673..981072	-	799	163846301	-	Caur_0718	-	helix-turn-helix domain-containing protein
699	 63.59	+1	981589..982206	+	205	163846302	-	Caur_0719	-	hypothetical protein
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.