IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
559	 54.07	0	753317..753562	+	81	163846162	-	Caur_0571	-	SirA family protein
560	 55.88	0	753743..754882	+	379	163846163	-	Caur_0572	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
561	 58.07	0	755120..756538	+	472	163846164	-	Caur_0573	-	tyrosine phenol-lyase
562	 61.68	+1	758748..759650	-	300	163846165	-	Caur_0575	-	ROK family protein
563	 60.61	+1	759720..761024	-	434	163846166	-	Caur_0576	-	diaminopimelate decarboxylase
564	 58.06	0	761021..761659	-	212	163846167	-	Caur_0577	-	metal dependent phophohydrolase
565	 61.30	+1	762539..765091	-	850	163846168	-	Caur_0578	-	copper-translocating P-type ATPase
566	 52.44	-1	765208..765432	-	74	163846169	-	Caur_0579	-	heavy metal transport/detoxification protein
567	 50.76	-1	765451..765777	-	108	163846170	-	Caur_0580	-	hypothetical protein
568	 61.72	+1	769217..770065	-	282	163846171	-	Caur_0582	-	ABC transporter related
569	 54.17	0	770090..771634	-	514	163846172	-	Caur_0583	-	aldehyde dehydrogenase
570	 50.60	-1	771807..775391	+	1194	163846173	-	Caur_0584	-	HEAT repeat-containing PBS lyase
571	 55.59	0	780845..781846	+	333	163846174	-	Caur_0585	-	L-carnitine dehydratase/bile acid-inducible protein F
572	 56.70	0	781830..782732	-	300	163846175	-	Caur_0586	-	hypothetical protein
573	 54.89	0	782746..783144	-	132	163846176	-	Caur_0587	-	hypothetical protein
574	 55.66	0	783141..783794	-	217	163846177	-	Caur_0588	-	hypothetical protein
575	 51.06	-1	783878..784159	-	93	163846178	-	Caur_0589	-	hypothetical protein
576	 56.64	0	784177..784854	-	225	163846179	-	Caur_0590	-	class II aldolase/adducin family protein
577	 55.31	0	784832..785923	-	363	163846180	-	Caur_0591	-	hypothetical protein
578	 57.52	0	785948..787369	-	473	163846181	-	Caur_0592	-	amidase
579	 57.76	0	787513..788556	+	347	163846182	-	Caur_0593	-	saccharopine dehydrogenase
580	 58.04	0	788867..789643	+	258	163846183	-	Caur_0594	-	transcriptional regulator domain-containing protein
581	 53.14	0	790929..791660	+	243	163846184	-	Caur_0595	-	transcriptional regulator domain-containing protein
582	 53.03	-1	793008..793535	-	175	163846185	-	Caur_0596	-	hypothetical protein
583	 56.24	0	794091..794579	+	162	163846186	-	Caur_0597	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
584	 51.93	-1	796241..796525	-	94	163846187	-	Caur_0601	-	hypothetical protein
585	 59.33	0	796800..797630	-	276	163846188	-	Caur_0602	-	hypothetical protein
586	 49.52	-1	797882..798400	-	172	163846189	-	Caur_0603	-	hypothetical protein
587	 54.91	0	798464..798982	-	172	163846190	-	Caur_0604	-	hypothetical protein
588	 58.53	0	799211..801877	+	888	163846191	-	Caur_0605	-	TPR repeat-containing protein
589	 60.90	+1	804499..806301	-	600	163846192	-	Caur_0607	-	TrkA domain-containing protein
590	 56.43	0	806318..806698	-	126	163846193	-	Caur_0608	-	hypothetical protein
591	 55.46	0	807239..807586	+	115	163846194	-	Caur_0609	-	hypothetical protein
592	 57.41	0	808712..810472	+	586	163846195	-	Caur_0610	-	DNA repair protein RecN
593	 59.96	0	810522..813755	+	1077	163846196	-	Caur_0611	-	TPR repeat-containing protein
594	 58.75	0	813844..814866	+	340	163846197	-	Caur_0612	-	glycosyl transferase family protein
595	 59.48	0	814951..820419	-	1822	163846198	-	Caur_0613	-	AMP-dependent synthetase and ligase
596	 57.69	0	820830..822890	+	686	163846199	-	Caur_0614	-	hypothetical protein
597	 55.02	0	823286..823723	-	145	163846200	-	Caur_0615	-	hypothetical protein
598	 57.96	0	824053..825534	+	493	163846201	-	Caur_0616	-	inosine-5'-monophosphate dehydrogenase
599	 61.72	+1	826111..827283	+	390	163846202	-	Caur_0617	-	GHMP kinase domain-containing protein
600	 56.80	0	828184..828690	+	168	163846203	-	Caur_0618	-	hypothetical protein
601	 64.90	+2	829107..830468	-	453	163846204	-	Caur_0619	-	hydroxypyruvate reductase
602	 57.43	0	830461..831543	-	360	163846205	-	Caur_0620	-	translation-associated GTPase
603	 52.12	-1	832174..832833	+	219	163846206	-	Caur_0621	-	hypothetical protein
604	 56.70	0	832906..835995	+	1029	163846207	-	Caur_0622	-	Fe-S-cluster-containing hydrogenase components 1-like protein
605	 56.81	0	835998..837458	+	486	163846208	-	Caur_0623	-	polysulphide reductase NrfD
606	 53.15	0	837472..838011	+	179	163846209	-	Caur_0624	-	transmembrane prediction
607	 53.72	0	838021..838638	+	205	163846210	-	Caur_0625	-	hypothetical protein
608	 56.80	0	838657..839892	+	411	163846211	-	Caur_0626	-	hypothetical protein
609	 55.46	0	839911..840249	+	112	163846212	-	Caur_0627	-	hypothetical protein
610	 52.16	-1	842060..842521	-	153	163846213	-	Caur_0628	-	hypothetical protein
611	 58.07	0	843733..844977	+	414	163846214	-	Caur_0629	-	phosphoribosylamine--glycine ligase
612	 60.10	0	844981..845604	+	207	163846215	-	Caur_0630	-	phosphoribosylglycinamide formyltransferase
613	 58.18	0	845631..847304	-	557	163846216	-	Caur_0631	-	hypothetical protein
614	 57.58	0	847403..847798	-	131	163846217	-	Caur_0632	-	diacylglycerol kinase
615	 57.17	0	847908..848549	+	213	163846218	-	Caur_0633	-	phosphoglycerate mutase
616	 55.67	0	848707..850161	-	484	163846219	-	Caur_0634	-	hypothetical protein
617	 57.94	0	850422..851498	+	358	163846220	-	Caur_0635	-	hypothetical protein
618	 57.56	0	851598..853946	+	782	163846221	-	Caur_0636	-	iron permease FTR1
619	 59.47	0	853980..854882	+	300	163846222	-	Caur_0637	-	nitroreductase
620	 54.63	0	855001..857343	-	780	163846223	-	Caur_0638	-	hypothetical protein
621	 58.14	0	857423..858196	-	257	163846224	-	Caur_0639	-	hypothetical protein
622	 54.02	0	858764..861103	-	779	163846225	-	Caur_0640	-	hypothetical protein
623	 62.39	+1	861130..861900	-	256	163846226	-	Caur_0641	-	hypothetical protein
624	 57.76	0	861940..863208	-	422	163846227	-	Caur_0642	-	glycosyl transferase group 1
625	 54.86	0	863262..864125	-	287	163846228	-	Caur_0643	-	methyltransferase type 11
626	 56.55	0	865066..866439	+	457	163846229	-	Caur_0644	-	oxygen-independent coproporphyrinogen III oxidase
627	 60.42	0	866452..867876	+	474	163846230	-	Caur_0645	-	protoporphyrinogen oxidase
628	 45.98	-2	868374..869045	+	223	163846231	-	Caur_0646	-	hypothetical protein
629	 50.18	-1	869495..873133	+	1212	163846232	-	Caur_0647	-	NHL repeat-containing protein
630	 55.24	0	875189..878311	-	1040	163846233	-	Caur_0648	-	PA14 domain-containing protein
631	 57.17	0	878332..882552	-	1406	163846234	-	Caur_0649	-	peptidase S8 and S53 subtilisin kexin sedolisin
632	 52.33	-1	883268..886672	-	1134	163846235	-	Caur_0650	-	fibronectin type III domain-containing protein
633	 57.11	0	886931..888091	-	386	163846236	-	Caur_0651	-	monogalactosyldiacylglycerol synthase
634	 55.96	0	888084..889223	-	379	163846237	-	Caur_0652	-	monogalactosyldiacylglycerol synthase
635	 46.63	-2	889706..890194	+	162	163846238	-	Caur_0653	-	hypothetical protein
636	 64.45	+2	890541..891173	+	210	163846239	-	Caur_0654	-	hypothetical protein
637	 58.33	0	891163..892074	+	303	163846240	-	Caur_0655	-	putative esterase
638	 60.03	0	892071..893471	+	466	163846241	-	Caur_0656	-	histidine kinase dimerisation and phosphoacceptor region
639	 56.60	0	893571..894494	+	307	163846242	-	Caur_0657	-	hypothetical protein
640	 47.63	-2	894782..895795	+	337	163846243	-	Caur_0658	-	DNA methylase N-4/N-6 domain-containing protein
641	 39.64	-2	895792..896742	+	316	163846244	-	Caur_0659	-	hypothetical protein
642	 56.42	0	896763..897416	-	217	163846245	-	Caur_0660	-	response regulator receiver
643	 57.71	0	897714..898952	-	412	163846246	-	Caur_0661	-	histidine kinase dimerisation and phosphoacceptor region
644	 55.97	0	898949..899902	-	317	163846247	-	Caur_0662	-	hypothetical protein
645	 59.75	0	900251..902116	+	621	163846248	-	Caur_0663	-	peptidase M1 membrane alanine aminopeptidase
646	 57.97	0	902531..902806	-	91	163846249	-	Caur_0664	-	histone family protein DNA-binding protein
647	 55.18	0	902998..903528	-	176	163846250	-	Caur_0665	-	small GTP-binding protein
648	 54.74	0	903560..904372	-	270	163846251	-	Caur_0666	-	hypothetical protein
649	 55.56	0	904410..905381	-	323	163846252	-	Caur_0667	-	hypothetical protein
650	 55.41	0	905539..905991	-	150	163846253	-	Caur_0668	-	hypothetical protein
651	 57.36	0	906058..906315	-	85	163846254	-	Caur_0669	-	hypothetical protein
652	 59.26	0	906312..907391	-	359	163846255	-	Caur_0670	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
653	 59.37	0	907502..908323	+	273	163846256	-	Caur_0671	-	alpha/beta hydrolase fold-containing protein
654	 56.05	0	908666..909475	+	269	163846257	-	Caur_0672	-	alpha/beta hydrolase fold-containing protein
655	 60.05	0	909635..911326	+	563	163846258	-	Caur_0673	-	AMP-dependent synthetase and ligase
656	 57.10	0	911614..913128	+	504	163846259	-	Caur_0674	-	band 7 protein
657	 59.71	0	913125..914360	+	411	163846260	-	Caur_0675	-	band 7 protein
658	 57.76	0	914929..916197	+	422	163846261	-	Caur_0676	-	helix-turn-helix domain-containing protein
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.