IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3754	 58.55	0	5117712..5118845	+	377	163849357	-	Caur_3835	-	periplasmic binding protein
3755	 56.47	0	5118996..5120084	+	362	163849358	-	Caur_3836	-	periplasmic binding protein
3756	 53.58	0	5120159..5121274	+	371	163849359	-	Caur_3837	-	periplasmic binding protein
3757	 51.25	-1	5121457..5122455	-	332	163849360	-	Caur_3838	-	aldo/keto reductase
3758	 51.54	-1	5122767..5123189	-	140	163849361	-	Caur_3839	-	hypothetical protein
3759	 53.06	-1	5123214..5124293	-	359	163849362	-	Caur_3840	-	alcohol dehydrogenase
3760	 50.05	-1	5124393..5125337	+	314	163849363	-	Caur_3841	-	AraC-like transcriptional regulator
3761	 57.45	0	5126782..5129310	-	842	163849364	-	Caur_3842	-	primosomal protein N'
3762	 51.93	-1	5129442..5129726	+	94	163849365	-	Caur_3843	-	ribosomal protein L25
3763	 56.48	0	5129771..5130919	-	382	163849366	-	Caur_3844	-	glycosyl transferase family protein
3764	 57.19	0	5134099..5135427	-	442	163849367	-	Caur_3845	-	acyl-CoA dehydrogenase domain-containing protein
3765	 58.78	0	5135559..5136344	-	261	163849368	-	Caur_3846	-	hypothetical protein
3766	 58.03	0	5136583..5139267	+	894	163849369	-	Caur_3847	-	alanyl-tRNA synthetase
3767	 60.23	0	5139381..5141432	+	683	163849370	-	Caur_3848	-	hypothetical protein
3768	 57.36	0	5141425..5141886	+	153	163849371	-	Caur_3849	-	Holliday junction resolvase YqgF
3769	 60.81	+1	5141861..5142304	+	147	163849372	-	Caur_3850	-	GCN5-related N-acetyltransferase
3770	 55.00	0	5142320..5142619	-	99	163849373	-	Caur_3851	-	hypothetical protein
3771	 48.97	-2	5142905..5143684	+	259	163849374	-	Caur_3852	-	hypothetical protein
3772	 48.61	-2	5143677..5144324	+	215	163849375	-	Caur_3853	-	hypothetical protein
3773	 52.81	-1	5144324..5145016	+	230	163849376	-	Caur_3854	-	response regulator receiver
3774	 57.03	0	5145032..5146390	+	452	163849377	-	Caur_3855	-	histidine kinase
3775	 54.87	0	5146675..5149056	+	793	163849378	-	Caur_3856	-	glycosyltransferase 36
3776	 55.58	0	5149153..5150613	+	486	163849379	-	Caur_3857	-	extracellular solute-binding protein
3777	 53.29	0	5150701..5153541	+	946	163849380	-	Caur_3858	-	extracellular solute-binding protein
3778	 52.79	-1	5153531..5154445	+	304	163849381	-	Caur_3859	-	binding-protein-dependent transport systems inner membrane component
3779	 51.38	-1	5154447..5155349	+	300	163849382	-	Caur_3860	-	binding-protein-dependent transport systems inner membrane component
3780	 52.08	-1	5155349..5157364	+	671	163849383	-	Caur_3861	-	NHL repeat-containing protein
3781	 55.93	0	5157357..5159489	+	710	163849384	-	Caur_3862	-	hypothetical protein
3782	 47.82	-2	5159544..5160413	+	289	163849385	-	Caur_3863	-	binding-protein-dependent transport systems inner membrane component
3783	 51.59	-1	5160418..5161392	+	324	163849386	-	Caur_3864	-	binding-protein-dependent transport systems inner membrane component
3784	 53.99	0	5161385..5162764	+	459	163849387	-	Caur_3865	-	hypothetical protein
3785	 53.15	0	5162764..5163747	+	327	163849388	-	Caur_3866	-	alanine racemase
3786	 55.45	0	5163751..5164989	+	412	163849389	-	Caur_3867	-	hypothetical protein
3787	 55.38	0	5165008..5167275	+	755	163849390	-	Caur_3868	-	glycoside hydrolase family protein
3788	 59.60	0	5167376..5169484	+	702	163849391	-	Caur_3869	-	glycoside hydrolase family 3 protein
3789	 62.31	+1	5169534..5170520	-	328	163849392	-	Caur_3870	-	inner-membrane translocator
3790	 61.84	+1	5170588..5171622	-	344	163849393	-	Caur_3871	-	inner-membrane translocator
3791	 59.59	0	5171619..5173115	-	498	163849394	-	Caur_3872	-	ABC transporter related
3792	 56.91	0	5173861..5175090	-	409	163849395	-	Caur_3873	-	basic membrane lipoprotein
3793	 53.64	0	5175456..5176499	+	347	163849396	-	Caur_3874	-	hypothetical protein
3794	 57.01	0	5177928..5179481	+	517	163849397	-	Caur_3875	-	4-alpha-glucanotransferase
3795	 59.37	0	5179463..5180641	-	392	163849398	-	Caur_3876	-	DNA replication and repair protein RecF
3796	 56.77	0	5180662..5181702	-	346	163849399	-	Caur_3877	-	isopentenyl pyrophosphate isomerase
3797	 52.20	-1	5182044..5183612	+	522	163849400	-	Caur_3878	-	PAS sensor protein
3798	 66.33	+2	5184517..5185692	+	391	163849401	-	Caur_3879	-	hypothetical protein
3799	 59.45	0	5186375..5187745	+	456	163849402	-	Caur_3880	-	FAD dependent oxidoreductase
3800	 55.22	0	5187758..5188936	-	392	163849403	-	Caur_3881	-	beta-lactamase
3801	 57.43	0	5188946..5189779	-	277	163849404	-	Caur_3882	-	biotin/lipoate A/B protein ligase
3802	 58.76	0	5189761..5190885	-	374	163849405	-	Caur_3883	-	hypothetical protein
3803	 59.03	0	5190882..5193356	-	824	163849406	-	Caur_3884	-	hypothetical protein
3804	 53.38	0	5193404..5194321	-	305	163849407	-	Caur_3885	-	hypothetical protein
3805	 51.82	-1	5194705..5195337	-	210	163849408	-	Caur_3886	-	metallophosphoesterase
3806	 54.22	0	5195455..5197029	-	524	163849409	-	Caur_3887	-	histidine kinase
3807	 57.48	0	5197994..5200726	-	910	163849410	-	Caur_3888	-	phosphoenolpyruvate carboxylase
3808	 58.75	0	5201664..5202938	-	424	163849411	-	Caur_3889	-	isocitrate lyase
3809	 53.72	0	5203064..5203372	-	102	163849412	-	Caur_3890	-	MazG nucleotide pyrophosphohydrolase
3810	 57.87	0	5203483..5203698	+	71	163849413	-	Caur_3891	-	hypothetical protein
3811	 58.41	0	5203738..5204973	+	411	163849414	-	Caur_3892	-	threonine dehydratase
3812	 55.18	0	5205313..5206731	+	472	163849415	-	Caur_3893	-	cell cycle protein
3813	 54.41	0	5208088..5209278	-	396	163849416	-	Caur_3894	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
3814	 58.62	0	5209343..5210038	-	231	163849417	-	Caur_3895	-	hypothetical protein
3815	 56.32	0	5210148..5211548	-	466	163849418	-	Caur_3896	-	beta-lactamase domain-containing protein
3816	 58.42	0	5211833..5212729	+	298	163849419	-	Caur_3897	-	LysR substrate-binding
3817	 46.45	-2	5212707..5212988	-	93	163849420	-	Caur_3898	-	hypothetical protein
3818	 55.98	0	5212972..5213598	-	208	163849421	-	Caur_3899	-	sigma-70 family RNA polymerase sigma factor
3819	 55.20	0	5213928..5214590	-	220	163849422	-	Caur_3900	-	glutaredoxin-like domain-containing protein
3820	 54.24	0	5214667..5215857	-	396	163849423	-	Caur_3901	-	major facilitator transporter
3821	 51.74	-1	5215947..5216663	+	238	163849424	-	Caur_3902	-	putative esterase
3822	 54.75	0	5216991..5217569	+	192	163849425	-	Caur_3903	-	TadE family protein
3823	 52.33	-1	5217582..5218181	+	199	163849426	-	Caur_3904	-	TadE family protein
3824	 55.16	0	5218253..5220808	+	851	163849427	-	Caur_3905	-	von Willebrand factor type A
3825	 53.68	0	5220927..5223536	+	869	163849428	-	Caur_3906	-	hypothetical protein
3826	 55.61	0	5223824..5224402	+	192	163849429	-	Caur_3907	-	hypothetical protein
3827	 56.01	0	5224422..5225012	+	196	163849430	-	Caur_3908	-	hexapaptide repeat-containing transferase
3828	 59.88	0	5225009..5226304	-	431	163849431	-	Caur_3909	-	peptidase M14 carboxypeptidase A
3829	 56.55	0	5226362..5227696	-	444	163849432	-	Caur_3910	-	hypothetical protein
3830	 58.26	0	5227967..5229382	+	471	163849433	-	Caur_3911	-	virulence factor MVIN family protein
3831	 54.76	0	5229542..5231707	+	721	163849434	-	Caur_3912	-	diguanylate cyclase
3832	 55.16	0	5231681..5233453	-	590	163849435	-	Caur_3913	-	hypothetical protein
3833	 58.51	0	5234347..5237940	-	1197	163849436	-	Caur_3914	-	methionine synthase
3834	 57.58	0	5238209..5238868	-	219	163849437	-	Caur_3915	-	phosphate transport system regulatory protein PhoU
3835	 57.28	0	5239250..5239963	+	237	163849438	-	Caur_3916	-	nicotinamidase-like amidase
3836	 58.34	0	5240921..5243251	-	776	163849439	-	Caur_3917	-	DNA topoisomerase I
3837	 55.16	0	5243424..5243927	+	167	163849440	-	Caur_3918	-	ferroxidase
3838	 58.56	0	5244188..5244952	+	254	163849441	-	Caur_3919	-	hypothetical protein
3839	 56.05	0	5245098..5247188	+	696	163849442	-	Caur_3920	-	acetyl coenzyme A synthetase subunit alpha
3840	 55.74	0	5247200..5248270	+	356	163849443	-	Caur_3921	-	DRTGG domain-containing protein
3841	 51.28	-1	5248279..5248629	+	116	163849444	-	Caur_3922	-	hypothetical protein
3842	 58.79	0	5248616..5249707	+	363	163849445	-	Caur_3923	-	dihydroorotate oxidase
3843	 55.25	0	5249704..5250141	+	145	163849446	-	Caur_3924	-	hypothetical protein
3844	 60.77	+1	5250183..5250911	+	242	163849447	-	Caur_3925	-	orotidine 5'-phosphate decarboxylase
3845	 58.79	0	5250921..5251580	+	219	163849448	-	Caur_3926	-	phosphoribosyltransferase
3846	 55.08	0	5251731..5252429	+	232	163849449	-	Caur_3927	-	hypothetical protein
3847	 54.08	0	5252431..5253177	+	248	163849450	-	Caur_3928	-	hypothetical protein
3848	 58.79	0	5253438..5254364	-	308	163849451	-	Caur_3929	-	hypothetical protein
3849	 54.28	0	5254365..5254808	-	147	163849452	-	Caur_3930	-	hypothetical protein
3850	 54.98	0	5254781..5255362	-	193	163849453	-	Caur_3931	-	sigma-70 family RNA polymerase sigma factor
3851	 55.69	0	5255637..5255891	+	84	163849454	-	Caur_3932	-	hypothetical protein
3852	 56.96	0	5255964..5257241	-	425	163849455	-	Caur_3933	-	inner-membrane translocator
3853	 54.60	0	5257376..5258005	+	209	163849456	-	Caur_3934	-	segregation and condensation protein B
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.