IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3722	 59.91	0	5071302..5072633	+	443	163849325	-	Caur_3802	-	aminotransferase class-III
3723	 55.70	0	5072707..5073636	+	309	163849326	-	Caur_3803	-	undecaprenol kinase
3724	 63.11	+1	5073661..5074812	+	383	163849327	-	Caur_3804	-	integrase family protein
3725	 61.12	+1	5075634..5076950	+	438	163849328	-	Caur_3805	-	chlorophyllide reductase subunit Y
3726	 59.11	0	5076947..5078428	+	493	163849329	-	Caur_3806	-	chlorophyllide reductase subunit Z
3727	 58.52	0	5078504..5079289	+	261	163849330	-	Caur_3807	-	stationary-phase survival protein SurE
3728	 58.63	0	5079482..5080762	+	426	163849331	-	Caur_3808	-	phosphopyruvate hydratase
3729	 53.75	0	5080992..5082284	-	430	163849332	-	Caur_3809	-	citrate synthase I
3730	 56.93	0	5082515..5085493	-	992	163849333	-	Caur_3810	-	hypothetical protein
3731	 56.75	0	5085607..5086776	-	389	163849334	-	Caur_3811	-	major facilitator transporter
3732	 57.50	0	5086865..5087824	-	319	163849335	-	Caur_3812	-	arginase/agmatinase/formiminoglutamase
3733	 53.66	0	5087821..5088066	-	81	163849336	-	Caur_3813	-	hypothetical protein
3734	 53.07	-1	5088093..5088614	-	173	163849337	-	Caur_3814	-	forkhead-associated protein
3735	 57.28	0	5088631..5089887	-	418	163849338	-	Caur_3815	-	von Willebrand factor type A
3736	 57.52	0	5089890..5090840	-	316	163849339	-	Caur_3816	-	protein phosphatase 2C-like protein
3737	 55.42	0	5090870..5092888	-	672	163849340	-	Caur_3817	-	protein kinase
3738	 61.55	+1	5093038..5094522	-	494	163849341	-	Caur_3818	-	carbohydrate kinase FGGY
3739	 59.08	0	5094704..5095507	+	267	163849342	-	Caur_3819	-	hypothetical protein
3740	 53.77	0	5095599..5098652	-	1017	163849343	-	Caur_3820	-	transcriptional activator domain-containing protein
3741	 51.52	-1	5099032..5099988	+	318	163849344	-	Caur_3821	-	hypothetical protein
3742	 53.06	-1	5099999..5102527	+	842	163849345	-	Caur_3822	-	coagulation factor 5/8 type domain-containing protein
3743	 57.92	0	5103287..5105149	+	620	163849346	-	Caur_3823	-	WD40 domain-containing protein
3744	 57.22	0	5105514..5106815	-	433	163849347	-	Caur_3824	-	hypothetical protein
3745	 57.24	0	5107004..5107756	-	250	163849348	-	Caur_3825	-	Triose-phosphate isomerase
3746	 54.46	0	5107775..5108446	-	223	163849349	-	Caur_3826	-	peptidase M50
3747	 57.34	0	5108840..5109643	-	267	163849350	-	Caur_3827	-	hypothetical protein
3748	 60.22	0	5110160..5111416	+	418	163849351	-	Caur_3828	-	major facilitator transporter
3749	 57.51	0	5111430..5112587	+	385	163849352	-	Caur_3829	-	periplasmic binding protein
3750	 59.89	0	5113756..5114802	+	348	163849353	-	Caur_3831	-	transport system permease protein
3751	 56.64	0	5114876..5115733	+	285	163849354	-	Caur_3832	-	hypothetical protein
3752	 58.45	0	5115730..5116800	+	356	163849355	-	Caur_3833	-	transport system permease protein
3753	 57.43	0	5116849..5117703	+	284	163849356	-	Caur_3834	-	ABC transporter related
3754	 58.55	0	5117712..5118845	+	377	163849357	-	Caur_3835	-	periplasmic binding protein
3755	 56.47	0	5118996..5120084	+	362	163849358	-	Caur_3836	-	periplasmic binding protein
3756	 53.58	0	5120159..5121274	+	371	163849359	-	Caur_3837	-	periplasmic binding protein
3757	 51.25	-1	5121457..5122455	-	332	163849360	-	Caur_3838	-	aldo/keto reductase
3758	 51.54	-1	5122767..5123189	-	140	163849361	-	Caur_3839	-	hypothetical protein
3759	 53.06	-1	5123214..5124293	-	359	163849362	-	Caur_3840	-	alcohol dehydrogenase
3760	 50.05	-1	5124393..5125337	+	314	163849363	-	Caur_3841	-	AraC-like transcriptional regulator
3761	 57.45	0	5126782..5129310	-	842	163849364	-	Caur_3842	-	primosomal protein N'
3762	 51.93	-1	5129442..5129726	+	94	163849365	-	Caur_3843	-	ribosomal protein L25
3763	 56.48	0	5129771..5130919	-	382	163849366	-	Caur_3844	-	glycosyl transferase family protein
3764	 57.19	0	5134099..5135427	-	442	163849367	-	Caur_3845	-	acyl-CoA dehydrogenase domain-containing protein
3765	 58.78	0	5135559..5136344	-	261	163849368	-	Caur_3846	-	hypothetical protein
3766	 58.03	0	5136583..5139267	+	894	163849369	-	Caur_3847	-	alanyl-tRNA synthetase
3767	 60.23	0	5139381..5141432	+	683	163849370	-	Caur_3848	-	hypothetical protein
3768	 57.36	0	5141425..5141886	+	153	163849371	-	Caur_3849	-	Holliday junction resolvase YqgF
3769	 60.81	+1	5141861..5142304	+	147	163849372	-	Caur_3850	-	GCN5-related N-acetyltransferase
3770	 55.00	0	5142320..5142619	-	99	163849373	-	Caur_3851	-	hypothetical protein
3771	 48.97	-2	5142905..5143684	+	259	163849374	-	Caur_3852	-	hypothetical protein
3772	 48.61	-2	5143677..5144324	+	215	163849375	-	Caur_3853	-	hypothetical protein
3773	 52.81	-1	5144324..5145016	+	230	163849376	-	Caur_3854	-	response regulator receiver
3774	 57.03	0	5145032..5146390	+	452	163849377	-	Caur_3855	-	histidine kinase
3775	 54.87	0	5146675..5149056	+	793	163849378	-	Caur_3856	-	glycosyltransferase 36
3776	 55.58	0	5149153..5150613	+	486	163849379	-	Caur_3857	-	extracellular solute-binding protein
3777	 53.29	0	5150701..5153541	+	946	163849380	-	Caur_3858	-	extracellular solute-binding protein
3778	 52.79	-1	5153531..5154445	+	304	163849381	-	Caur_3859	-	binding-protein-dependent transport systems inner membrane component
3779	 51.38	-1	5154447..5155349	+	300	163849382	-	Caur_3860	-	binding-protein-dependent transport systems inner membrane component
3780	 52.08	-1	5155349..5157364	+	671	163849383	-	Caur_3861	-	NHL repeat-containing protein
3781	 55.93	0	5157357..5159489	+	710	163849384	-	Caur_3862	-	hypothetical protein
3782	 47.82	-2	5159544..5160413	+	289	163849385	-	Caur_3863	-	binding-protein-dependent transport systems inner membrane component
3783	 51.59	-1	5160418..5161392	+	324	163849386	-	Caur_3864	-	binding-protein-dependent transport systems inner membrane component
3784	 53.99	0	5161385..5162764	+	459	163849387	-	Caur_3865	-	hypothetical protein
3785	 53.15	0	5162764..5163747	+	327	163849388	-	Caur_3866	-	alanine racemase
3786	 55.45	0	5163751..5164989	+	412	163849389	-	Caur_3867	-	hypothetical protein
3787	 55.38	0	5165008..5167275	+	755	163849390	-	Caur_3868	-	glycoside hydrolase family protein
3788	 59.60	0	5167376..5169484	+	702	163849391	-	Caur_3869	-	glycoside hydrolase family 3 protein
3789	 62.31	+1	5169534..5170520	-	328	163849392	-	Caur_3870	-	inner-membrane translocator
3790	 61.84	+1	5170588..5171622	-	344	163849393	-	Caur_3871	-	inner-membrane translocator
3791	 59.59	0	5171619..5173115	-	498	163849394	-	Caur_3872	-	ABC transporter related
3792	 56.91	0	5173861..5175090	-	409	163849395	-	Caur_3873	-	basic membrane lipoprotein
3793	 53.64	0	5175456..5176499	+	347	163849396	-	Caur_3874	-	hypothetical protein
3794	 57.01	0	5177928..5179481	+	517	163849397	-	Caur_3875	-	4-alpha-glucanotransferase
3795	 59.37	0	5179463..5180641	-	392	163849398	-	Caur_3876	-	DNA replication and repair protein RecF
3796	 56.77	0	5180662..5181702	-	346	163849399	-	Caur_3877	-	isopentenyl pyrophosphate isomerase
3797	 52.20	-1	5182044..5183612	+	522	163849400	-	Caur_3878	-	PAS sensor protein
3798	 66.33	+2	5184517..5185692	+	391	163849401	-	Caur_3879	-	hypothetical protein
3799	 59.45	0	5186375..5187745	+	456	163849402	-	Caur_3880	-	FAD dependent oxidoreductase
3800	 55.22	0	5187758..5188936	-	392	163849403	-	Caur_3881	-	beta-lactamase
3801	 57.43	0	5188946..5189779	-	277	163849404	-	Caur_3882	-	biotin/lipoate A/B protein ligase
3802	 58.76	0	5189761..5190885	-	374	163849405	-	Caur_3883	-	hypothetical protein
3803	 59.03	0	5190882..5193356	-	824	163849406	-	Caur_3884	-	hypothetical protein
3804	 53.38	0	5193404..5194321	-	305	163849407	-	Caur_3885	-	hypothetical protein
3805	 51.82	-1	5194705..5195337	-	210	163849408	-	Caur_3886	-	metallophosphoesterase
3806	 54.22	0	5195455..5197029	-	524	163849409	-	Caur_3887	-	histidine kinase
3807	 57.48	0	5197994..5200726	-	910	163849410	-	Caur_3888	-	phosphoenolpyruvate carboxylase
3808	 58.75	0	5201664..5202938	-	424	163849411	-	Caur_3889	-	isocitrate lyase
3809	 53.72	0	5203064..5203372	-	102	163849412	-	Caur_3890	-	MazG nucleotide pyrophosphohydrolase
3810	 57.87	0	5203483..5203698	+	71	163849413	-	Caur_3891	-	hypothetical protein
3811	 58.41	0	5203738..5204973	+	411	163849414	-	Caur_3892	-	threonine dehydratase
3812	 55.18	0	5205313..5206731	+	472	163849415	-	Caur_3893	-	cell cycle protein
3813	 54.41	0	5208088..5209278	-	396	163849416	-	Caur_3894	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
3814	 58.62	0	5209343..5210038	-	231	163849417	-	Caur_3895	-	hypothetical protein
3815	 56.32	0	5210148..5211548	-	466	163849418	-	Caur_3896	-	beta-lactamase domain-containing protein
3816	 58.42	0	5211833..5212729	+	298	163849419	-	Caur_3897	-	LysR substrate-binding
3817	 46.45	-2	5212707..5212988	-	93	163849420	-	Caur_3898	-	hypothetical protein
3818	 55.98	0	5212972..5213598	-	208	163849421	-	Caur_3899	-	sigma-70 family RNA polymerase sigma factor
3819	 55.20	0	5213928..5214590	-	220	163849422	-	Caur_3900	-	glutaredoxin-like domain-containing protein
3820	 54.24	0	5214667..5215857	-	396	163849423	-	Caur_3901	-	major facilitator transporter
3821	 51.74	-1	5215947..5216663	+	238	163849424	-	Caur_3902	-	putative esterase
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.