IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3650	 56.10	0	4966502..4967116	+	204	163849253	-	Caur_3730	-	colicin V production protein
3651	 54.32	0	4967838..4968485	+	215	163849254	-	Caur_3731	-	hypothetical protein
3652	 63.14	+1	4968946..4970163	-	405	163849255	-	Caur_3732	-	queuine tRNA-ribosyltransferase
3653	 61.34	+1	4970279..4971910	-	543	163849256	-	Caur_3733	-	polysaccharide biosynthesis protein
3654	 59.03	0	4971907..4972692	-	261	163849257	-	Caur_3734	-	hypothetical protein
3655	 57.22	0	4972768..4973148	-	126	163849258	-	Caur_3735	-	endoribonuclease L-PSP
3656	 57.53	0	4973165..4975123	-	652	163849259	-	Caur_3736	-	hypothetical protein
3657	 53.54	0	4975141..4975338	-	65	163849260	-	Caur_3737	-	exonuclease VII small subunit
3658	 59.21	0	4975331..4976524	-	397	163849261	-	Caur_3738	-	exodeoxyribonuclease VII, large subunit
3659	 54.88	0	4976524..4977066	-	180	163849262	-	Caur_3739	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
3660	 47.34	-2	4977256..4977462	+	68	163849263	-	Caur_3740	-	hypothetical protein
3661	 56.04	0	4977858..4978478	+	206	163849264	-	Caur_3741	-	phosphate acetyltransferase
3662	 58.84	0	4978728..4979813	-	361	163849265	-	Caur_3742	-	polyprenyl synthetase
3663	 52.67	-1	4980264..4980863	+	199	163849266	-	Caur_3743	-	sigma-70 family RNA polymerase sigma factor
3664	 58.76	0	4980876..4981760	+	294	163849267	-	Caur_3744	-	putative transmembrane anti-sigma factor
3665	 68.75	+2	4982130..4983569	-	479	163849268	-	Caur_3745	-	hypothetical protein
3666	 57.19	0	4985858..4986775	+	305	163849269	-	Caur_3746	-	dienelactone hydrolase
3667	 59.64	0	4986851..4989595	+	914	163849270	-	Caur_3747	-	heavy metal translocating P-type ATPase
3668	 59.21	0	4990272..4992686	+	804	163849271	-	Caur_3748	-	peptidase S45 penicillin amidase
3669	 58.44	0	4993772..4995205	-	477	163849272	-	Caur_3749	-	hypothetical protein
3670	 56.64	0	4995450..4996436	-	328	163849273	-	Caur_3750	-	GHMP kinase
3671	 57.43	0	4996631..4997236	+	201	163849274	-	Caur_3751	-	histidinol-phosphate phosphatase family protein
3672	 59.67	0	4997250..4998821	+	523	163849275	-	Caur_3752	-	RND family efflux transporter MFP subunit
3673	 57.47	0	4998837..5000816	+	659	163849276	-	Caur_3753	-	lipopolysaccharide biosynthesis protein
3674	 59.03	0	5000828..5002777	+	649	163849277	-	Caur_3754	-	hypothetical protein
3675	 56.90	0	5002808..5005285	+	825	163849278	-	Caur_3755	-	hypothetical protein
3676	 59.45	0	5005317..5006480	+	387	163849279	-	Caur_3756	-	membrane protein-like protein
3677	 57.21	0	5006895..5008004	+	369	163849280	-	Caur_3757	-	glycosyl transferase group 1
3678	 57.26	0	5008001..5009446	+	481	163849281	-	Caur_3758	-	polysaccharide biosynthesis protein
3679	 57.06	0	5009461..5010771	+	436	163849282	-	Caur_3759	-	glycosyl transferase group 1
3680	 57.57	0	5010783..5011694	+	303	163849283	-	Caur_3760	-	glycosyl transferase family protein
3681	 58.72	0	5011722..5012891	+	389	163849284	-	Caur_3761	-	glycosyl transferase group 1
3682	 58.05	0	5012911..5014128	+	405	163849285	-	Caur_3762	-	glycosyl transferase group 1
3683	 56.48	0	5014109..5015050	+	313	163849286	-	Caur_3763	-	glycosyl transferase family protein
3684	 54.49	0	5015060..5016472	+	470	163849287	-	Caur_3764	-	O-antigen polymerase
3685	 58.64	0	5016469..5018124	+	551	163849288	-	Caur_3765	-	glycosyl hydrolase BNR repeat-containing glycosyl hydrolase
3686	 55.40	0	5018151..5019818	+	555	163849289	-	Caur_3766	-	hypothetical protein
3687	 44.40	-2	5019832..5021331	-	499	163849290	-	Caur_3767	-	hypothetical protein
3688	 57.30	0	5021688..5022509	+	273	163849291	-	Caur_3768	-	hypothetical protein
3689	 63.07	+1	5023488..5028125	+	1545	163849292	-	Caur_3769	-	laminin G, domain-containing 2
3690	 63.52	+1	5028518..5033215	+	1565	163849293	-	Caur_3770	-	laminin G, domain-containing 2
3691	 59.36	0	5033228..5034541	+	437	163849294	-	Caur_3771	-	laminin G
3692	 54.94	0	5034553..5034876	+	107	163849295	-	Caur_3772	-	hypothetical protein
3693	 57.92	0	5034854..5035573	+	239	163849296	-	Caur_3773	-	short-chain dehydrogenase/reductase SDR
3694	 55.46	0	5035599..5036945	+	448	163849297	-	Caur_3774	-	AMP-dependent synthetase and ligase
3695	 61.56	+1	5036972..5038441	+	489	163849298	-	Caur_3775	-	hypothetical protein
3696	 58.15	0	5038471..5039433	+	320	163849299	-	Caur_3776	-	hexapaptide repeat-containing transferase
3697	 59.85	0	5039437..5040522	+	361	163849300	-	Caur_3777	-	UDP-N-acetylglucosamine 2-epimerase
3698	 57.51	0	5040619..5041350	+	243	163849301	-	Caur_3778	-	hexapaptide repeat-containing transferase
3699	 59.22	0	5041403..5042638	+	411	163849302	-	Caur_3779	-	glycosyl transferase family protein
3700	 53.11	0	5042652..5043182	+	176	163849303	-	Caur_3780	-	hypothetical protein
3701	 58.05	0	5043133..5044884	+	583	163849304	-	Caur_3781	-	radical SAM domain-containing protein
3702	 59.78	0	5044975..5046498	+	507	163849305	-	Caur_3782	-	4-amino-4-deoxy-L-arabinose transferase-like protein
3703	 59.99	0	5046516..5048012	+	498	163849306	-	Caur_3783	-	hypothetical protein
3704	 60.36	0	5048017..5049252	+	411	163849307	-	Caur_3784	-	glycosyl transferase group 1
3705	 59.92	0	5049249..5050463	+	404	163849308	-	Caur_3785	-	glycosyl transferase group 1
3706	 57.01	0	5050606..5051361	+	251	163849309	-	Caur_3786	-	glycosyl transferase family protein
3707	 55.77	0	5051389..5051847	+	152	163849310	-	Caur_3787	-	hypothetical protein
3708	 54.52	0	5051876..5052484	+	202	163849311	-	Caur_3788	-	sugar isomerase (SIS)
3709	 57.92	0	5052481..5053578	+	365	163849312	-	Caur_3789	-	glutamine--scyllo-inositol transaminase
3710	 57.66	0	5053612..5054955	+	447	163849313	-	Caur_3790	-	hypothetical protein
3711	 53.90	0	5054963..5056435	+	490	163849314	-	Caur_3791	-	exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
3712	 56.91	0	5056467..5057501	+	344	163849315	-	Caur_3792	-	oxidoreductase domain-containing protein
3713	 59.71	0	5057892..5059457	-	521	163849316	-	Caur_3793	-	AMP-dependent synthetase and ligase
3714	 60.52	+1	5059526..5059948	-	140	163849317	-	Caur_3794	-	hypothetical protein
3715	 56.64	0	5059961..5061595	-	544	163849318	-	Caur_3795	-	hypothetical protein
3716	 54.90	0	5062018..5065647	+	1209	163849319	-	Caur_3796	-	PAS sensor protein
3717	 52.21	-1	5065634..5066062	+	142	163849320	-	Caur_3797	-	response regulator receiver
3718	 56.15	0	5066043..5068211	+	722	163849321	-	Caur_3798	-	diguanylate cyclase
3719	 53.20	0	5068212..5069384	+	390	163849322	-	Caur_3799	-	response regulator receiver
3720	 59.82	0	5069613..5070488	-	291	163849323	-	Caur_3800	-	hypothetical protein
3721	 54.69	0	5070566..5071300	+	244	163849324	-	Caur_3801	-	metallophosphoesterase
3722	 59.91	0	5071302..5072633	+	443	163849325	-	Caur_3802	-	aminotransferase class-III
3723	 55.70	0	5072707..5073636	+	309	163849326	-	Caur_3803	-	undecaprenol kinase
3724	 63.11	+1	5073661..5074812	+	383	163849327	-	Caur_3804	-	integrase family protein
3725	 61.12	+1	5075634..5076950	+	438	163849328	-	Caur_3805	-	chlorophyllide reductase subunit Y
3726	 59.11	0	5076947..5078428	+	493	163849329	-	Caur_3806	-	chlorophyllide reductase subunit Z
3727	 58.52	0	5078504..5079289	+	261	163849330	-	Caur_3807	-	stationary-phase survival protein SurE
3728	 58.63	0	5079482..5080762	+	426	163849331	-	Caur_3808	-	phosphopyruvate hydratase
3729	 53.75	0	5080992..5082284	-	430	163849332	-	Caur_3809	-	citrate synthase I
3730	 56.93	0	5082515..5085493	-	992	163849333	-	Caur_3810	-	hypothetical protein
3731	 56.75	0	5085607..5086776	-	389	163849334	-	Caur_3811	-	major facilitator transporter
3732	 57.50	0	5086865..5087824	-	319	163849335	-	Caur_3812	-	arginase/agmatinase/formiminoglutamase
3733	 53.66	0	5087821..5088066	-	81	163849336	-	Caur_3813	-	hypothetical protein
3734	 53.07	-1	5088093..5088614	-	173	163849337	-	Caur_3814	-	forkhead-associated protein
3735	 57.28	0	5088631..5089887	-	418	163849338	-	Caur_3815	-	von Willebrand factor type A
3736	 57.52	0	5089890..5090840	-	316	163849339	-	Caur_3816	-	protein phosphatase 2C-like protein
3737	 55.42	0	5090870..5092888	-	672	163849340	-	Caur_3817	-	protein kinase
3738	 61.55	+1	5093038..5094522	-	494	163849341	-	Caur_3818	-	carbohydrate kinase FGGY
3739	 59.08	0	5094704..5095507	+	267	163849342	-	Caur_3819	-	hypothetical protein
3740	 53.77	0	5095599..5098652	-	1017	163849343	-	Caur_3820	-	transcriptional activator domain-containing protein
3741	 51.52	-1	5099032..5099988	+	318	163849344	-	Caur_3821	-	hypothetical protein
3742	 53.06	-1	5099999..5102527	+	842	163849345	-	Caur_3822	-	coagulation factor 5/8 type domain-containing protein
3743	 57.92	0	5103287..5105149	+	620	163849346	-	Caur_3823	-	WD40 domain-containing protein
3744	 57.22	0	5105514..5106815	-	433	163849347	-	Caur_3824	-	hypothetical protein
3745	 57.24	0	5107004..5107756	-	250	163849348	-	Caur_3825	-	Triose-phosphate isomerase
3746	 54.46	0	5107775..5108446	-	223	163849349	-	Caur_3826	-	peptidase M50
3747	 57.34	0	5108840..5109643	-	267	163849350	-	Caur_3827	-	hypothetical protein
3748	 60.22	0	5110160..5111416	+	418	163849351	-	Caur_3828	-	major facilitator transporter
3749	 57.51	0	5111430..5112587	+	385	163849352	-	Caur_3829	-	periplasmic binding protein
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.