IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3603	 55.56	0	4908582..4908923	-	113	163849206	-	Caur_3679	-	hypothetical protein
3604	 59.73	0	4909411..4910391	+	326	163849207	-	Caur_3680	-	cobalamin (vitamin B12) biosynthesis CbiM protein
3605	 63.37	+1	4910400..4911158	+	252	163849208	-	Caur_3681	-	cobalt ABC transporter, inner membrane subunit CbiQ
3606	 62.09	+1	4911162..4911860	+	232	163849209	-	Caur_3682	-	cobalt ABC transporter, ATPase subunit
3607	 57.65	0	4911864..4912373	-	169	163849210	-	Caur_3683	-	NUDIX hydrolase
3608	 49.30	-2	4913218..4913718	+	166	163849211	-	Caur_3684	-	glutathione peroxidase
3609	 65.30	+2	4913932..4914807	+	291	163849212	-	Caur_3685	-	hypothetical protein
3610	 49.66	-1	4914919..4915659	+	246	163849213	-	Caur_3686	-	hypothetical protein
3611	 48.84	-2	4915677..4916108	+	143	163849214	-	Caur_3687	-	hypothetical protein
3612	 56.94	0	4916624..4916911	+	95	163849215	-	Caur_3688	-	hypothetical protein
3613	 61.83	+1	4916982..4917704	+	240	163849216	-	Caur_3689	-	hypothetical protein
3614	 62.61	+1	4918313..4918780	+	155	163849217	-	Caur_3691	-	hypothetical protein
3615	 60.93	+1	4918782..4919408	+	208	163849218	-	Caur_3692	-	hypothetical protein
3616	 55.91	0	4919813..4920370	+	185	163849219	-	Caur_3694	-	hypothetical protein
3617	 51.07	-1	4920446..4921195	+	249	163849220	-	Caur_3695	-	hypothetical protein
3618	 53.41	0	4921441..4921983	+	180	163849221	-	Caur_3696	-	hypothetical protein
3619	 63.99	+1	4922506..4923291	+	261	163849222	-	Caur_3697	-	hypothetical protein
3620	 51.37	-1	4923292..4923546	+	84	163849223	-	Caur_3698	-	hypothetical protein
3621	 63.58	+1	4923643..4925166	+	507	163849224	-	Caur_3699	-	transposase IS4 family protein
3622	 64.35	+2	4925233..4926270	+	345	163849225	-	Caur_3700	-	hypothetical protein
3623	 64.54	+2	4927732..4928577	+	281	163849226	-	Caur_3703	-	hypothetical protein
3624	 64.53	+2	4928847..4929314	+	155	163849227	-	Caur_3704	-	hypothetical protein
3625	 58.24	0	4929320..4930375	+	351	163849228	-	Caur_3705	-	hypothetical protein
3626	 54.78	0	4930802..4931188	+	128	163849229	-	Caur_3706	-	hypothetical protein
3627	 60.78	+1	4931417..4931671	+	84	163849230	-	Caur_3707	-	hypothetical protein
3628	 53.73	0	4931907..4932161	+	84	163849231	-	Caur_3708	-	hypothetical protein
3629	 54.07	0	4932163..4932432	+	89	163849232	-	Caur_3709	-	hypothetical protein
3630	 63.80	+1	4932542..4933204	+	220	163849233	-	Caur_3710	-	hypothetical protein
3631	 50.98	-1	4933205..4933459	+	84	163849234	-	Caur_3711	-	hypothetical protein
3632	 60.36	0	4934348..4935520	+	390	163849235	-	Caur_3712	-	galactokinase
3633	 65.81	+2	4935823..4936761	+	312	163849236	-	Caur_3713	-	alpha/beta hydrolase fold-containing protein
3634	 60.00	0	4936799..4937023	+	74	163849237	-	Caur_3714	-	hypothetical protein
3635	 59.69	0	4937236..4937622	-	128	163849238	-	Caur_3715	-	hypothetical protein
3636	 64.52	+2	4937775..4938938	+	387	163849239	-	Caur_3716	-	N-methyltryptophan oxidase
3637	 52.15	-1	4940079..4940264	+	61	163849240	-	Caur_3717	-	hypothetical protein
3638	 54.25	0	4940278..4940583	+	101	163849241	-	Caur_3718	-	hypothetical protein
3639	 61.74	+1	4940975..4941400	+	141	163849242	-	Caur_3719	-	hypothetical protein
3640	 64.85	+2	4941631..4944762	+	1043	163849243	-	Caur_3720	-	hypothetical protein
3641	 55.81	0	4947162..4948478	-	438	163849244	-	Caur_3721	-	ABC transporter related
3642	 53.82	0	4948563..4950275	-	570	163849245	-	Caur_3722	-	binding-protein-dependent transport systems inner membrane component
3643	 67.16	+2	4950418..4951224	+	268	163849246	-	Caur_3723	-	transposase IS4 family protein
3644	 57.67	0	4951231..4952586	-	451	163849247	-	Caur_3724	-	magnesium transporter
3645	 53.65	0	4953144..4953827	+	227	163849248	-	Caur_3725	-	hypothetical protein
3646	 59.69	0	4953859..4955205	-	448	163849249	-	Caur_3726	-	2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase
3647	 58.17	0	4955243..4958065	-	940	163849250	-	Caur_3727	-	alpha-ketoglutarate decarboxylase
3648	 57.69	0	4959917..4963582	+	1221	163849251	-	Caur_3728	-	hypothetical protein
3649	 57.70	0	4963936..4964961	-	341	163849252	-	Caur_3729	-	glyceraldehyde-3-phosphate dehydrogenase, type I
3650	 56.10	0	4966502..4967116	+	204	163849253	-	Caur_3730	-	colicin V production protein
3651	 54.32	0	4967838..4968485	+	215	163849254	-	Caur_3731	-	hypothetical protein
3652	 63.14	+1	4968946..4970163	-	405	163849255	-	Caur_3732	-	queuine tRNA-ribosyltransferase
3653	 61.34	+1	4970279..4971910	-	543	163849256	-	Caur_3733	-	polysaccharide biosynthesis protein
3654	 59.03	0	4971907..4972692	-	261	163849257	-	Caur_3734	-	hypothetical protein
3655	 57.22	0	4972768..4973148	-	126	163849258	-	Caur_3735	-	endoribonuclease L-PSP
3656	 57.53	0	4973165..4975123	-	652	163849259	-	Caur_3736	-	hypothetical protein
3657	 53.54	0	4975141..4975338	-	65	163849260	-	Caur_3737	-	exonuclease VII small subunit
3658	 59.21	0	4975331..4976524	-	397	163849261	-	Caur_3738	-	exodeoxyribonuclease VII, large subunit
3659	 54.88	0	4976524..4977066	-	180	163849262	-	Caur_3739	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
3660	 47.34	-2	4977256..4977462	+	68	163849263	-	Caur_3740	-	hypothetical protein
3661	 56.04	0	4977858..4978478	+	206	163849264	-	Caur_3741	-	phosphate acetyltransferase
3662	 58.84	0	4978728..4979813	-	361	163849265	-	Caur_3742	-	polyprenyl synthetase
3663	 52.67	-1	4980264..4980863	+	199	163849266	-	Caur_3743	-	sigma-70 family RNA polymerase sigma factor
3664	 58.76	0	4980876..4981760	+	294	163849267	-	Caur_3744	-	putative transmembrane anti-sigma factor
3665	 68.75	+2	4982130..4983569	-	479	163849268	-	Caur_3745	-	hypothetical protein
3666	 57.19	0	4985858..4986775	+	305	163849269	-	Caur_3746	-	dienelactone hydrolase
3667	 59.64	0	4986851..4989595	+	914	163849270	-	Caur_3747	-	heavy metal translocating P-type ATPase
3668	 59.21	0	4990272..4992686	+	804	163849271	-	Caur_3748	-	peptidase S45 penicillin amidase
3669	 58.44	0	4993772..4995205	-	477	163849272	-	Caur_3749	-	hypothetical protein
3670	 56.64	0	4995450..4996436	-	328	163849273	-	Caur_3750	-	GHMP kinase
3671	 57.43	0	4996631..4997236	+	201	163849274	-	Caur_3751	-	histidinol-phosphate phosphatase family protein
3672	 59.67	0	4997250..4998821	+	523	163849275	-	Caur_3752	-	RND family efflux transporter MFP subunit
3673	 57.47	0	4998837..5000816	+	659	163849276	-	Caur_3753	-	lipopolysaccharide biosynthesis protein
3674	 59.03	0	5000828..5002777	+	649	163849277	-	Caur_3754	-	hypothetical protein
3675	 56.90	0	5002808..5005285	+	825	163849278	-	Caur_3755	-	hypothetical protein
3676	 59.45	0	5005317..5006480	+	387	163849279	-	Caur_3756	-	membrane protein-like protein
3677	 57.21	0	5006895..5008004	+	369	163849280	-	Caur_3757	-	glycosyl transferase group 1
3678	 57.26	0	5008001..5009446	+	481	163849281	-	Caur_3758	-	polysaccharide biosynthesis protein
3679	 57.06	0	5009461..5010771	+	436	163849282	-	Caur_3759	-	glycosyl transferase group 1
3680	 57.57	0	5010783..5011694	+	303	163849283	-	Caur_3760	-	glycosyl transferase family protein
3681	 58.72	0	5011722..5012891	+	389	163849284	-	Caur_3761	-	glycosyl transferase group 1
3682	 58.05	0	5012911..5014128	+	405	163849285	-	Caur_3762	-	glycosyl transferase group 1
3683	 56.48	0	5014109..5015050	+	313	163849286	-	Caur_3763	-	glycosyl transferase family protein
3684	 54.49	0	5015060..5016472	+	470	163849287	-	Caur_3764	-	O-antigen polymerase
3685	 58.64	0	5016469..5018124	+	551	163849288	-	Caur_3765	-	glycosyl hydrolase BNR repeat-containing glycosyl hydrolase
3686	 55.40	0	5018151..5019818	+	555	163849289	-	Caur_3766	-	hypothetical protein
3687	 44.40	-2	5019832..5021331	-	499	163849290	-	Caur_3767	-	hypothetical protein
3688	 57.30	0	5021688..5022509	+	273	163849291	-	Caur_3768	-	hypothetical protein
3689	 63.07	+1	5023488..5028125	+	1545	163849292	-	Caur_3769	-	laminin G, domain-containing 2
3690	 63.52	+1	5028518..5033215	+	1565	163849293	-	Caur_3770	-	laminin G, domain-containing 2
3691	 59.36	0	5033228..5034541	+	437	163849294	-	Caur_3771	-	laminin G
3692	 54.94	0	5034553..5034876	+	107	163849295	-	Caur_3772	-	hypothetical protein
3693	 57.92	0	5034854..5035573	+	239	163849296	-	Caur_3773	-	short-chain dehydrogenase/reductase SDR
3694	 55.46	0	5035599..5036945	+	448	163849297	-	Caur_3774	-	AMP-dependent synthetase and ligase
3695	 61.56	+1	5036972..5038441	+	489	163849298	-	Caur_3775	-	hypothetical protein
3696	 58.15	0	5038471..5039433	+	320	163849299	-	Caur_3776	-	hexapaptide repeat-containing transferase
3697	 59.85	0	5039437..5040522	+	361	163849300	-	Caur_3777	-	UDP-N-acetylglucosamine 2-epimerase
3698	 57.51	0	5040619..5041350	+	243	163849301	-	Caur_3778	-	hexapaptide repeat-containing transferase
3699	 59.22	0	5041403..5042638	+	411	163849302	-	Caur_3779	-	glycosyl transferase family protein
3700	 53.11	0	5042652..5043182	+	176	163849303	-	Caur_3780	-	hypothetical protein
3701	 58.05	0	5043133..5044884	+	583	163849304	-	Caur_3781	-	radical SAM domain-containing protein
3702	 59.78	0	5044975..5046498	+	507	163849305	-	Caur_3782	-	4-amino-4-deoxy-L-arabinose transferase-like protein
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.