IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3560	 57.51	0	4861088..4861906	+	272	163849163	-	Caur_3635	-	ABC transporter related
3561	 56.78	0	4861903..4862610	+	235	163849164	-	Caur_3636	-	ABC transporter related
3562	 58.88	0	4862725..4864200	+	491	163849165	-	Caur_3637	-	inner-membrane translocator
3563	 58.24	0	4864204..4865247	+	347	163849166	-	Caur_3638	-	inner-membrane translocator
3564	 45.82	-2	4865840..4866784	+	314	163849167	-	Caur_3639	-	DNA methylase N-4/N-6 domain-containing protein
3565	 58.77	0	4867008..4867235	-	75	163849168	-	Caur_3640	-	3-hydroxyisobutyrate dehydrogenase-like protein
3566	 56.99	0	4867335..4868171	-	278	163849169	-	Caur_3641	-	hydroxypyruvate isomerase
3567	 52.85	-1	4868201..4868902	-	233	163849170	-	Caur_3642	-	response regulator-like protein
3568	 54.61	0	4868884..4869696	-	270	163849171	-	Caur_3643	-	hypothetical protein
3569	 58.92	0	4869739..4870461	-	240	163849172	-	Caur_3644	-	ubiquinone/menaquinone biosynthesis methyltransferase
3570	 60.39	0	4870552..4871475	-	307	163849173	-	Caur_3645	-	asparaginase/glutaminase
3571	 57.12	0	4871460..4872224	-	254	163849174	-	Caur_3646	-	methyltransferase type 11
3572	 57.50	0	4872221..4873180	-	319	163849175	-	Caur_3647	-	hypothetical protein
3573	 57.35	0	4873187..4874131	-	314	163849176	-	Caur_3648	-	glycosyl transferase family protein
3574	 57.63	0	4874138..4876273	-	711	163849177	-	Caur_3649	-	hypothetical protein
3575	 59.22	0	4876608..4878809	-	733	163849178	-	Caur_3650	-	hypothetical protein
3576	 60.86	+1	4878826..4879875	-	349	163849179	-	Caur_3651	-	SH3 type 3 domain-containing protein
3577	 59.73	0	4879872..4881110	-	412	163849180	-	Caur_3652	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
3578	 55.56	0	4881607..4882245	+	212	163849181	-	Caur_3653	-	redox-sensing transcriptional repressor Rex
3579	 60.11	0	4882500..4883948	+	482	163849182	-	Caur_3654	-	isochorismate synthase
3580	 60.66	+1	4883960..4885723	+	587	163849183	-	Caur_3655	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
3581	 60.67	+1	4885725..4886957	+	410	163849184	-	Caur_3656	-	acetylornithine and succinylornithine aminotransferase
3582	 68.50	+2	4887051..4887323	+	90	163849185	-	Caur_3657	-	hypothetical protein
3583	 52.20	-1	4887411..4887569	+	52	163849186	-	Caur_3658	-	hypothetical protein
3584	 64.42	+2	4887602..4888447	+	281	163849187	-	Caur_3659	-	hypothetical protein
3585	 67.28	+2	4888717..4889208	+	163	163849188	-	Caur_3660	-	hypothetical protein
3586	 58.74	0	4889214..4889579	+	121	163849189	-	Caur_3661	-	hypothetical protein
3587	 63.38	+1	4890000..4890668	+	222	163849190	-	Caur_3662	-	hypothetical protein
3588	 48.31	-2	4890668..4890934	+	88	163849191	-	Caur_3663	-	hypothetical protein
3589	 70.40	+2	4891063..4891491	+	142	163849192	-	Caur_3664	-	YD repeat-containing protein
3590	 60.98	+1	4891576..4891821	+	81	163849193	-	Caur_3665	-	hypothetical protein
3591	 62.99	+1	4892104..4892538	-	144	163849194	-	Caur_3666	-	transposase IS4 family protein
3592	 65.05	+2	4892538..4892909	-	123	163849195	-	Caur_3667	-	TIS1421-transposase protein A
3593	 50.49	-1	4893305..4893613	+	102	163849196	-	Caur_3668	-	hypothetical protein
3594	 57.99	0	4894569..4895582	-	337	163849197	-	Caur_3669	-	ATP-NAD/AcoX kinase
3595	 60.23	0	4895688..4897085	-	465	163849198	-	Caur_3670	-	biotin/lipoyl attachment domain-containing protein
3596	 56.62	0	4897115..4898149	-	344	163849199	-	Caur_3671	-	transketolase central region
3597	 57.92	0	4898227..4899243	-	338	163849200	-	Caur_3672	-	pyruvate dehydrogenase (acetyl-transferring)
3598	 52.73	-1	4903917..4904648	+	243	163849201	-	Caur_3674	-	hypothetical protein
3599	 56.86	0	4904671..4905231	+	186	163849202	-	Caur_3675	-	SNARE associated Golgi protein
3600	 54.48	0	4905291..4906940	-	549	163849203	-	Caur_3676	-	magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase
3601	 59.54	0	4907012..4907614	-	200	163849204	-	Caur_3677	-	bacteriochlorophyll 4-vinyl reductase
3602	 60.54	+1	4907797..4908579	-	260	163849205	-	Caur_3678	-	hemolysin A
3603	 55.56	0	4908582..4908923	-	113	163849206	-	Caur_3679	-	hypothetical protein
3604	 59.73	0	4909411..4910391	+	326	163849207	-	Caur_3680	-	cobalamin (vitamin B12) biosynthesis CbiM protein
3605	 63.37	+1	4910400..4911158	+	252	163849208	-	Caur_3681	-	cobalt ABC transporter, inner membrane subunit CbiQ
3606	 62.09	+1	4911162..4911860	+	232	163849209	-	Caur_3682	-	cobalt ABC transporter, ATPase subunit
3607	 57.65	0	4911864..4912373	-	169	163849210	-	Caur_3683	-	NUDIX hydrolase
3608	 49.30	-2	4913218..4913718	+	166	163849211	-	Caur_3684	-	glutathione peroxidase
3609	 65.30	+2	4913932..4914807	+	291	163849212	-	Caur_3685	-	hypothetical protein
3610	 49.66	-1	4914919..4915659	+	246	163849213	-	Caur_3686	-	hypothetical protein
3611	 48.84	-2	4915677..4916108	+	143	163849214	-	Caur_3687	-	hypothetical protein
3612	 56.94	0	4916624..4916911	+	95	163849215	-	Caur_3688	-	hypothetical protein
3613	 61.83	+1	4916982..4917704	+	240	163849216	-	Caur_3689	-	hypothetical protein
3614	 62.61	+1	4918313..4918780	+	155	163849217	-	Caur_3691	-	hypothetical protein
3615	 60.93	+1	4918782..4919408	+	208	163849218	-	Caur_3692	-	hypothetical protein
3616	 55.91	0	4919813..4920370	+	185	163849219	-	Caur_3694	-	hypothetical protein
3617	 51.07	-1	4920446..4921195	+	249	163849220	-	Caur_3695	-	hypothetical protein
3618	 53.41	0	4921441..4921983	+	180	163849221	-	Caur_3696	-	hypothetical protein
3619	 63.99	+1	4922506..4923291	+	261	163849222	-	Caur_3697	-	hypothetical protein
3620	 51.37	-1	4923292..4923546	+	84	163849223	-	Caur_3698	-	hypothetical protein
3621	 63.58	+1	4923643..4925166	+	507	163849224	-	Caur_3699	-	transposase IS4 family protein
3622	 64.35	+2	4925233..4926270	+	345	163849225	-	Caur_3700	-	hypothetical protein
3623	 64.54	+2	4927732..4928577	+	281	163849226	-	Caur_3703	-	hypothetical protein
3624	 64.53	+2	4928847..4929314	+	155	163849227	-	Caur_3704	-	hypothetical protein
3625	 58.24	0	4929320..4930375	+	351	163849228	-	Caur_3705	-	hypothetical protein
3626	 54.78	0	4930802..4931188	+	128	163849229	-	Caur_3706	-	hypothetical protein
3627	 60.78	+1	4931417..4931671	+	84	163849230	-	Caur_3707	-	hypothetical protein
3628	 53.73	0	4931907..4932161	+	84	163849231	-	Caur_3708	-	hypothetical protein
3629	 54.07	0	4932163..4932432	+	89	163849232	-	Caur_3709	-	hypothetical protein
3630	 63.80	+1	4932542..4933204	+	220	163849233	-	Caur_3710	-	hypothetical protein
3631	 50.98	-1	4933205..4933459	+	84	163849234	-	Caur_3711	-	hypothetical protein
3632	 60.36	0	4934348..4935520	+	390	163849235	-	Caur_3712	-	galactokinase
3633	 65.81	+2	4935823..4936761	+	312	163849236	-	Caur_3713	-	alpha/beta hydrolase fold-containing protein
3634	 60.00	0	4936799..4937023	+	74	163849237	-	Caur_3714	-	hypothetical protein
3635	 59.69	0	4937236..4937622	-	128	163849238	-	Caur_3715	-	hypothetical protein
3636	 64.52	+2	4937775..4938938	+	387	163849239	-	Caur_3716	-	N-methyltryptophan oxidase
3637	 52.15	-1	4940079..4940264	+	61	163849240	-	Caur_3717	-	hypothetical protein
3638	 54.25	0	4940278..4940583	+	101	163849241	-	Caur_3718	-	hypothetical protein
3639	 61.74	+1	4940975..4941400	+	141	163849242	-	Caur_3719	-	hypothetical protein
3640	 64.85	+2	4941631..4944762	+	1043	163849243	-	Caur_3720	-	hypothetical protein
3641	 55.81	0	4947162..4948478	-	438	163849244	-	Caur_3721	-	ABC transporter related
3642	 53.82	0	4948563..4950275	-	570	163849245	-	Caur_3722	-	binding-protein-dependent transport systems inner membrane component
3643	 67.16	+2	4950418..4951224	+	268	163849246	-	Caur_3723	-	transposase IS4 family protein
3644	 57.67	0	4951231..4952586	-	451	163849247	-	Caur_3724	-	magnesium transporter
3645	 53.65	0	4953144..4953827	+	227	163849248	-	Caur_3725	-	hypothetical protein
3646	 59.69	0	4953859..4955205	-	448	163849249	-	Caur_3726	-	2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase
3647	 58.17	0	4955243..4958065	-	940	163849250	-	Caur_3727	-	alpha-ketoglutarate decarboxylase
3648	 57.69	0	4959917..4963582	+	1221	163849251	-	Caur_3728	-	hypothetical protein
3649	 57.70	0	4963936..4964961	-	341	163849252	-	Caur_3729	-	glyceraldehyde-3-phosphate dehydrogenase, type I
3650	 56.10	0	4966502..4967116	+	204	163849253	-	Caur_3730	-	colicin V production protein
3651	 54.32	0	4967838..4968485	+	215	163849254	-	Caur_3731	-	hypothetical protein
3652	 63.14	+1	4968946..4970163	-	405	163849255	-	Caur_3732	-	queuine tRNA-ribosyltransferase
3653	 61.34	+1	4970279..4971910	-	543	163849256	-	Caur_3733	-	polysaccharide biosynthesis protein
3654	 59.03	0	4971907..4972692	-	261	163849257	-	Caur_3734	-	hypothetical protein
3655	 57.22	0	4972768..4973148	-	126	163849258	-	Caur_3735	-	endoribonuclease L-PSP
3656	 57.53	0	4973165..4975123	-	652	163849259	-	Caur_3736	-	hypothetical protein
3657	 53.54	0	4975141..4975338	-	65	163849260	-	Caur_3737	-	exonuclease VII small subunit
3658	 59.21	0	4975331..4976524	-	397	163849261	-	Caur_3738	-	exodeoxyribonuclease VII, large subunit
3659	 54.88	0	4976524..4977066	-	180	163849262	-	Caur_3739	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.