IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3251	 58.49	0	4449501..4449965	+	154	163848854	-	Caur_3322	-	NUDIX hydrolase
3252	 60.00	0	4449962..4450426	+	154	163848855	-	Caur_3323	-	hypothetical protein
3253	 50.26	-1	4450554..4450742	-	62	163848856	-	Caur_3324	-	hypothetical protein
3254	 54.43	0	4450996..4451886	+	296	163848857	-	Caur_3325	-	hypothetical protein
3255	 54.14	0	4451902..4452300	+	132	163848858	-	Caur_3326	-	hypothetical protein
3256	 62.18	+1	4452917..4454053	-	378	163848859	-	Caur_3328	-	putative RNA methylase
3257	 58.49	0	4454069..4455157	-	362	163848860	-	Caur_3329	-	peptidase M20
3258	 62.09	+1	4455320..4456105	-	261	163848861	-	Caur_3330	-	short-chain dehydrogenase/reductase SDR
3259	 55.59	0	4456102..4456995	-	297	163848862	-	Caur_3331	-	ribonucleotide-diphosphate reductase subunit beta
3260	 58.55	0	4457016..4460699	-	1227	163848863	-	Caur_3332	-	HEAT repeat-containing PBS lyase
3261	 57.08	0	4460783..4461001	-	72	163848864	-	Caur_3333	-	hypothetical protein
3262	 57.91	0	4461003..4465331	-	1442	163848865	-	Caur_3334	-	adenylyl cyclase class-3/4/guanylyl cyclase
3263	 58.02	0	4466603..4467781	-	392	163848866	-	Caur_3335	-	radical SAM domain-containing protein
3264	 59.88	0	4467945..4469477	-	510	163848867	-	Caur_3336	-	aldehyde dehydrogenase
3265	 59.27	0	4469556..4470596	-	346	163848868	-	Caur_3337	-	adenosine deaminase
3266	 59.44	0	4470593..4471657	-	354	163848869	-	Caur_3338	-	homoserine dehydrogenase
3267	 58.92	0	4471812..4473269	+	485	163848870	-	Caur_3339	-	leucyl aminopeptidase
3268	 53.79	0	4473380..4473643	-	87	163848871	-	Caur_3340	-	hypothetical protein
3269	 52.11	-1	4473653..4476784	-	1043	163848872	-	Caur_3341	-	PAS sensor protein
3270	 59.03	0	4477282..4477818	+	178	163848873	-	Caur_3342	-	OsmC family protein
3271	 56.76	0	4477888..4478715	+	275	163848874	-	Caur_3343	-	cyclase family protein
3272	 57.82	0	4478781..4479956	-	391	163848875	-	Caur_3344	-	L-carnitine dehydratase/bile acid-inducible protein F
3273	 61.22	+1	4480082..4480981	+	299	163848876	-	Caur_3345	-	6-phosphogluconate dehydrogenase NAD-binding
3274	 53.89	0	4481079..4481438	-	119	163848877	-	Caur_3346	-	hypothetical protein
3275	 56.13	0	4481603..4482124	-	173	163848878	-	Caur_3347	-	GCN5-related N-acetyltransferase
3276	 58.66	0	4482174..4483559	-	461	163848879	-	Caur_3348	-	argininosuccinate lyase
3277	 60.03	0	4483572..4484324	-	250	163848880	-	Caur_3349	-	hypothetical protein
3278	 60.51	+1	4484340..4485557	-	405	163848881	-	Caur_3350	-	arginine biosynthesis bifunctional protein ArgJ
3279	 57.80	0	4485564..4486262	-	232	163848882	-	Caur_3351	-	phosphoglycerate mutase
3280	 39.07	-2	4486689..4487612	-	307	163848883	-	Caur_3352	-	DNA adenine methylase
3281	 46.46	-2	4489137..4490324	+	395	163848884	-	Caur_3354	-	hypothetical protein
3282	 60.27	0	4490442..4491551	-	369	163848885	-	Caur_3355	-	peptidase M24
3283	 60.85	+1	4491574..4492536	-	320	163848886	-	Caur_3356	-	2-dehydropantoate 2-reductase
3284	 59.89	0	4492546..4493298	-	250	163848887	-	Caur_3357	-	forkhead-associated protein
3285	 58.26	0	4493531..4494898	-	455	163848888	-	Caur_3358	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
3286	 58.54	0	4494959..4495450	-	163	163848889	-	Caur_3359	-	hypothetical protein
3287	 57.62	0	4495711..4496484	+	257	163848890	-	Caur_3360	-	inositol-phosphate phosphatase
3288	 62.84	+1	4496680..4497306	+	208	163848891	-	Caur_3361	-	hypothetical protein
3289	 58.56	0	4497312..4498655	+	447	163848892	-	Caur_3362	-	aminotransferase class-III
3290	 54.29	0	4498748..4499353	+	201	163848893	-	Caur_3363	-	GCN5-related N-acetyltransferase
3291	 57.42	0	4499365..4499883	-	172	163848894	-	Caur_3364	-	hypothetical protein
3292	 59.86	0	4500009..4502933	+	974	163848895	-	Caur_3365	-	phosphoribosylformylglycinamidine synthase II
3293	 54.94	0	4502930..4503739	+	269	163848896	-	Caur_3366	-	hypothetical protein
3294	 58.33	0	4503764..4504483	+	239	163848897	-	Caur_3367	-	hypothetical protein
3295	 59.46	0	4504480..4505076	+	198	163848898	-	Caur_3368	-	leucyl/phenylalanyl-tRNA--protein transferase
3296	 54.03	0	4505157..4505615	-	152	163848899	-	Caur_3369	-	hypothetical protein
3297	 54.17	0	4507786..4508145	+	119	163848900	-	Caur_3370	-	hypothetical protein
3298	 58.08	0	4508530..4512339	+	1269	163848901	-	Caur_3371	-	magnesium chelatase, H subunit
3299	 56.62	0	4512584..4513051	+	155	163848902	-	Caur_3372	-	regulatory protein MarR
3300	 58.25	0	4513159..4515036	+	625	163848903	-	Caur_3373	-	EmrB/QacA family drug resistance transporter
3301	 55.85	0	4515850..4516875	+	341	163848904	-	Caur_3374	-	transcriptional regulator-like protein
3302	 54.33	0	4516898..4517764	-	288	163848905	-	Caur_3375	-	serine/threonine protein kinase
3303	 54.28	0	4517764..4518207	-	147	163848906	-	Caur_3376	-	hypothetical protein
3304	 53.90	0	4518860..4519525	-	221	163848907	-	Caur_3377	-	response regulator receiver
3305	 52.29	-1	4519534..4523205	-	1223	163848908	-	Caur_3378	-	ATPase domain-containing protein
3306	 57.45	0	4523413..4524399	+	328	163848909	-	Caur_3379	-	hypothetical protein
3307	 57.30	0	4524411..4525766	+	451	163848910	-	Caur_3380	-	CRISPR-associated protein
3308	 54.97	0	4525800..4526816	+	338	163848911	-	Caur_3381	-	transcriptional regulator-like protein
3309	 50.28	-1	4526813..4527538	+	241	163848912	-	Caur_3382	-	hypothetical protein
3310	 56.71	0	4528080..4528712	+	210	163848913	-	Caur_3383	-	hypothetical protein
3311	 55.63	0	4528939..4530243	+	434	163848914	-	Caur_3384	-	RNA-directed DNA polymerase (Reverse transcriptase)
3312	 54.82	0	4530275..4531270	+	331	163848915	-	Caur_3385	-	CRISPR-associated Cas1 family protein
3313	 50.00	-1	4531267..4531548	+	93	163848916	-	Caur_3386	-	CRISPR-associated Cas2 family protein
3314	 55.83	0	4531549..4533651	-	700	163848917	-	Caur_3387	-	hypothetical protein
3315	 56.08	0	4540266..4541531	+	421	163848918	-	Caur_3388	-	hypothetical protein
3316	 58.11	0	4541816..4543042	-	408	163848919	-	Caur_3389	-	heat shock protein DnaJ domain-containing protein
3317	 54.92	0	4543126..4543542	+	138	163848920	-	Caur_3390	-	hypothetical protein
3318	 55.18	0	4543750..4544454	+	234	163848921	-	Caur_3391	-	response regulator receiver
3319	 58.50	0	4544451..4545638	+	395	163848922	-	Caur_3392	-	histidine kinase
3320	 57.29	0	4545635..4547821	+	728	163848923	-	Caur_3393	-	SSS family solute/sodium (Na+) symporter
3321	 60.14	0	4548503..4550494	+	663	163848924	-	Caur_3394	-	acetoacetyl-CoA synthetase
3322	 59.18	0	4551073..4552407	+	444	163848925	-	Caur_3395	-	glutamine synthetase, type I
3323	 57.56	0	4552464..4553111	-	215	163848926	-	Caur_3396	-	hemolysin III family channel protein
3324	 59.56	0	4553886..4555685	-	599	163848927	-	Caur_3397	-	peptidase S8 and S53 subtilisin kexin sedolisin
3325	 59.26	0	4555930..4556118	-	62	163848928	-	Caur_3398	-	hypothetical protein
3326	 61.97	+1	4556161..4556394	-	77	163848929	-	Caur_3399	-	hypothetical protein
3327	 58.20	0	4556482..4556670	-	62	163848930	-	Caur_3400	-	hypothetical protein
3328	 58.29	0	4556758..4557354	-	198	163848931	-	Caur_3401	-	regulatory protein TetR
3329	 62.68	+1	4557465..4559018	-	517	163848932	-	Caur_3402	-	secretion protein HlyD family protein
3330	 59.55	0	4559063..4562365	-	1100	163848933	-	Caur_3403	-	acriflavin resistance protein
3331	 58.97	0	4562460..4563434	+	324	163848934	-	Caur_3404	-	hypothetical protein
3332	 58.12	0	4563418..4564563	+	381	163848935	-	Caur_3405	-	hypothetical protein
3333	 55.94	0	4564604..4565554	+	316	163848936	-	Caur_3406	-	hypothetical protein
3334	 60.00	0	4565578..4566342	+	254	163848937	-	Caur_3407	-	acetylglutamate kinase
3335	 58.59	0	4566339..4567007	+	222	163848938	-	Caur_3408	-	cyclic nucleotide-binding
3336	 59.14	0	4567212..4569110	-	632	163848939	-	Caur_3409	-	hypothetical protein
3337	 58.52	0	4569116..4569643	-	175	163848940	-	Caur_3410	-	hypothetical protein
3338	 58.68	0	4569640..4570515	-	291	163848941	-	Caur_3411	-	hypothetical protein
3339	 60.38	0	4570515..4571516	-	333	163848942	-	Caur_3412	-	ATPase
3340	 62.06	+1	4571529..4573199	-	556	163848943	-	Caur_3413	-	hypothetical protein
3341	 66.43	+2	4573498..4573926	-	142	163848944	-	Caur_3414	-	hypothetical protein
3342	 58.38	0	4574850..4575344	-	164	163848945	-	Caur_3415	-	hypothetical protein
3343	 65.12	+2	4575374..4580278	-	1634	163848946	-	Caur_3416	-	NB-ARC domain-containing protein
3344	 55.98	0	4580910..4581695	-	261	163848947	-	Caur_3417	-	Sec-independent protein translocase, TatC subunit
3345	 58.39	0	4581692..4582537	-	281	163848948	-	Caur_3418	-	sec-independent translocation protein mttA/Hcf106
3346	 51.00	-1	4583127..4583375	-	82	163848949	-	Caur_3419	-	acyl carrier protein
3347	 54.98	0	4583406..4583867	-	153	163848950	-	Caur_3420	-	transcription antitermination factor NusB
3348	 58.63	0	4583880..4585247	-	455	163848951	-	Caur_3421	-	acetyl-CoA carboxylase, biotin carboxylase
3349	 59.76	0	4585247..4585999	-	250	163848952	-	Caur_3422	-	3-oxoacyl-(acyl-carrier-protein) reductase
3350	 55.00	0	4586005..4586904	-	299	163848953	-	Caur_3423	-	restriction endonuclease
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.