IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3222	 57.58	0	4415264..4416760	-	498	163848825	-	Caur_3292	-	glycerol kinase
3223	 57.36	0	4416809..4417453	-	214	163848826	-	Caur_3293	-	dihydroxyacetone kinase, L subunit
3224	 57.86	0	4417516..4418514	-	332	163848827	-	Caur_3294	-	dihydroxyacetone kinase, DhaK subunit
3225	 57.69	0	4418570..4419304	-	244	163848828	-	Caur_3295	-	major intrinsic protein
3226	 58.75	0	4419783..4421513	-	576	163848829	-	Caur_3296	-	hypothetical protein
3227	 58.30	0	4421461..4424952	-	1163	163848830	-	Caur_3297	-	alpha-2-macroglobulin domain-containing protein
3228	 56.22	0	4425397..4426401	-	334	163848831	-	Caur_3298	-	aminoglycoside phosphotransferase
3229	 60.13	0	4426536..4427315	+	259	163848832	-	Caur_3299	-	sugar fermentation stimulation protein
3230	 58.09	0	4427332..4428054	-	240	163848833	-	Caur_3300	-	GDSL family lipase
3231	 61.76	+1	4428615..4429817	-	400	163848834	-	Caur_3301	-	major facilitator transporter
3232	 61.72	+1	4429868..4430797	-	309	163848835	-	Caur_3302	-	luciferase family protein
3233	 59.85	0	4430884..4431294	+	136	163848836	-	Caur_3303	-	AIG2 family protein
3234	 58.28	0	4431301..4432206	+	301	163848837	-	Caur_3304	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
3235	 59.09	0	4432212..4433267	+	351	163848838	-	Caur_3305	-	agmatine deiminase
3236	 57.98	0	4433495..4433920	-	141	163848839	-	Caur_3307	-	hypothetical protein
3237	 57.75	0	4433937..4435304	-	455	163848840	-	Caur_3308	-	hypothetical protein
3238	 56.56	0	4435334..4437133	-	599	163848841	-	Caur_3309	-	hypothetical protein
3239	 59.66	0	4438032..4440086	+	684	163848842	-	Caur_3310	-	shikimate/quinate 5-dehydrogenase
3240	 60.70	+1	4440083..4440886	+	267	163848843	-	Caur_3311	-	alpha/beta hydrolase fold-containing protein
3241	 56.50	0	4440922..4441914	+	330	163848844	-	Caur_3312	-	ABC transporter related
3242	 56.22	0	4441933..4442736	+	267	163848845	-	Caur_3313	-	hypothetical protein
3243	 55.60	0	4442774..4443559	+	261	163848846	-	Caur_3314	-	hypothetical protein
3244	 60.76	+1	4443635..4444057	-	140	163848847	-	Caur_3315	-	thioesterase superfamily protein
3245	 58.50	0	4444153..4444752	-	199	163848848	-	Caur_3316	-	methyltransferase type 11
3246	 55.49	0	4444768..4445250	-	160	163848849	-	Caur_3317	-	SsrA-binding protein
3247	 58.49	0	4445254..4446732	-	492	163848850	-	Caur_3318	-	O-antigen polymerase
3248	 56.65	0	4446722..4447699	-	325	163848851	-	Caur_3319	-	fructose 1,6-bisphosphatase II
3249	 54.27	0	4447820..4448287	-	155	163848852	-	Caur_3320	-	hypothetical protein
3250	 56.16	0	4448945..4449496	+	183	163848853	-	Caur_3321	-	inorganic diphosphatase
3251	 58.49	0	4449501..4449965	+	154	163848854	-	Caur_3322	-	NUDIX hydrolase
3252	 60.00	0	4449962..4450426	+	154	163848855	-	Caur_3323	-	hypothetical protein
3253	 50.26	-1	4450554..4450742	-	62	163848856	-	Caur_3324	-	hypothetical protein
3254	 54.43	0	4450996..4451886	+	296	163848857	-	Caur_3325	-	hypothetical protein
3255	 54.14	0	4451902..4452300	+	132	163848858	-	Caur_3326	-	hypothetical protein
3256	 62.18	+1	4452917..4454053	-	378	163848859	-	Caur_3328	-	putative RNA methylase
3257	 58.49	0	4454069..4455157	-	362	163848860	-	Caur_3329	-	peptidase M20
3258	 62.09	+1	4455320..4456105	-	261	163848861	-	Caur_3330	-	short-chain dehydrogenase/reductase SDR
3259	 55.59	0	4456102..4456995	-	297	163848862	-	Caur_3331	-	ribonucleotide-diphosphate reductase subunit beta
3260	 58.55	0	4457016..4460699	-	1227	163848863	-	Caur_3332	-	HEAT repeat-containing PBS lyase
3261	 57.08	0	4460783..4461001	-	72	163848864	-	Caur_3333	-	hypothetical protein
3262	 57.91	0	4461003..4465331	-	1442	163848865	-	Caur_3334	-	adenylyl cyclase class-3/4/guanylyl cyclase
3263	 58.02	0	4466603..4467781	-	392	163848866	-	Caur_3335	-	radical SAM domain-containing protein
3264	 59.88	0	4467945..4469477	-	510	163848867	-	Caur_3336	-	aldehyde dehydrogenase
3265	 59.27	0	4469556..4470596	-	346	163848868	-	Caur_3337	-	adenosine deaminase
3266	 59.44	0	4470593..4471657	-	354	163848869	-	Caur_3338	-	homoserine dehydrogenase
3267	 58.92	0	4471812..4473269	+	485	163848870	-	Caur_3339	-	leucyl aminopeptidase
3268	 53.79	0	4473380..4473643	-	87	163848871	-	Caur_3340	-	hypothetical protein
3269	 52.11	-1	4473653..4476784	-	1043	163848872	-	Caur_3341	-	PAS sensor protein
3270	 59.03	0	4477282..4477818	+	178	163848873	-	Caur_3342	-	OsmC family protein
3271	 56.76	0	4477888..4478715	+	275	163848874	-	Caur_3343	-	cyclase family protein
3272	 57.82	0	4478781..4479956	-	391	163848875	-	Caur_3344	-	L-carnitine dehydratase/bile acid-inducible protein F
3273	 61.22	+1	4480082..4480981	+	299	163848876	-	Caur_3345	-	6-phosphogluconate dehydrogenase NAD-binding
3274	 53.89	0	4481079..4481438	-	119	163848877	-	Caur_3346	-	hypothetical protein
3275	 56.13	0	4481603..4482124	-	173	163848878	-	Caur_3347	-	GCN5-related N-acetyltransferase
3276	 58.66	0	4482174..4483559	-	461	163848879	-	Caur_3348	-	argininosuccinate lyase
3277	 60.03	0	4483572..4484324	-	250	163848880	-	Caur_3349	-	hypothetical protein
3278	 60.51	+1	4484340..4485557	-	405	163848881	-	Caur_3350	-	arginine biosynthesis bifunctional protein ArgJ
3279	 57.80	0	4485564..4486262	-	232	163848882	-	Caur_3351	-	phosphoglycerate mutase
3280	 39.07	-2	4486689..4487612	-	307	163848883	-	Caur_3352	-	DNA adenine methylase
3281	 46.46	-2	4489137..4490324	+	395	163848884	-	Caur_3354	-	hypothetical protein
3282	 60.27	0	4490442..4491551	-	369	163848885	-	Caur_3355	-	peptidase M24
3283	 60.85	+1	4491574..4492536	-	320	163848886	-	Caur_3356	-	2-dehydropantoate 2-reductase
3284	 59.89	0	4492546..4493298	-	250	163848887	-	Caur_3357	-	forkhead-associated protein
3285	 58.26	0	4493531..4494898	-	455	163848888	-	Caur_3358	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
3286	 58.54	0	4494959..4495450	-	163	163848889	-	Caur_3359	-	hypothetical protein
3287	 57.62	0	4495711..4496484	+	257	163848890	-	Caur_3360	-	inositol-phosphate phosphatase
3288	 62.84	+1	4496680..4497306	+	208	163848891	-	Caur_3361	-	hypothetical protein
3289	 58.56	0	4497312..4498655	+	447	163848892	-	Caur_3362	-	aminotransferase class-III
3290	 54.29	0	4498748..4499353	+	201	163848893	-	Caur_3363	-	GCN5-related N-acetyltransferase
3291	 57.42	0	4499365..4499883	-	172	163848894	-	Caur_3364	-	hypothetical protein
3292	 59.86	0	4500009..4502933	+	974	163848895	-	Caur_3365	-	phosphoribosylformylglycinamidine synthase II
3293	 54.94	0	4502930..4503739	+	269	163848896	-	Caur_3366	-	hypothetical protein
3294	 58.33	0	4503764..4504483	+	239	163848897	-	Caur_3367	-	hypothetical protein
3295	 59.46	0	4504480..4505076	+	198	163848898	-	Caur_3368	-	leucyl/phenylalanyl-tRNA--protein transferase
3296	 54.03	0	4505157..4505615	-	152	163848899	-	Caur_3369	-	hypothetical protein
3297	 54.17	0	4507786..4508145	+	119	163848900	-	Caur_3370	-	hypothetical protein
3298	 58.08	0	4508530..4512339	+	1269	163848901	-	Caur_3371	-	magnesium chelatase, H subunit
3299	 56.62	0	4512584..4513051	+	155	163848902	-	Caur_3372	-	regulatory protein MarR
3300	 58.25	0	4513159..4515036	+	625	163848903	-	Caur_3373	-	EmrB/QacA family drug resistance transporter
3301	 55.85	0	4515850..4516875	+	341	163848904	-	Caur_3374	-	transcriptional regulator-like protein
3302	 54.33	0	4516898..4517764	-	288	163848905	-	Caur_3375	-	serine/threonine protein kinase
3303	 54.28	0	4517764..4518207	-	147	163848906	-	Caur_3376	-	hypothetical protein
3304	 53.90	0	4518860..4519525	-	221	163848907	-	Caur_3377	-	response regulator receiver
3305	 52.29	-1	4519534..4523205	-	1223	163848908	-	Caur_3378	-	ATPase domain-containing protein
3306	 57.45	0	4523413..4524399	+	328	163848909	-	Caur_3379	-	hypothetical protein
3307	 57.30	0	4524411..4525766	+	451	163848910	-	Caur_3380	-	CRISPR-associated protein
3308	 54.97	0	4525800..4526816	+	338	163848911	-	Caur_3381	-	transcriptional regulator-like protein
3309	 50.28	-1	4526813..4527538	+	241	163848912	-	Caur_3382	-	hypothetical protein
3310	 56.71	0	4528080..4528712	+	210	163848913	-	Caur_3383	-	hypothetical protein
3311	 55.63	0	4528939..4530243	+	434	163848914	-	Caur_3384	-	RNA-directed DNA polymerase (Reverse transcriptase)
3312	 54.82	0	4530275..4531270	+	331	163848915	-	Caur_3385	-	CRISPR-associated Cas1 family protein
3313	 50.00	-1	4531267..4531548	+	93	163848916	-	Caur_3386	-	CRISPR-associated Cas2 family protein
3314	 55.83	0	4531549..4533651	-	700	163848917	-	Caur_3387	-	hypothetical protein
3315	 56.08	0	4540266..4541531	+	421	163848918	-	Caur_3388	-	hypothetical protein
3316	 58.11	0	4541816..4543042	-	408	163848919	-	Caur_3389	-	heat shock protein DnaJ domain-containing protein
3317	 54.92	0	4543126..4543542	+	138	163848920	-	Caur_3390	-	hypothetical protein
3318	 55.18	0	4543750..4544454	+	234	163848921	-	Caur_3391	-	response regulator receiver
3319	 58.50	0	4544451..4545638	+	395	163848922	-	Caur_3392	-	histidine kinase
3320	 57.29	0	4545635..4547821	+	728	163848923	-	Caur_3393	-	SSS family solute/sodium (Na+) symporter
3321	 60.14	0	4548503..4550494	+	663	163848924	-	Caur_3394	-	acetoacetyl-CoA synthetase
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.