IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
273	 53.37	0	363255..363833	+	192	163845876	-	Caur_0279	-	phosphoheptose isomerase
274	 59.44	0	363843..365420	+	525	163845877	-	Caur_0280	-	D-3-phosphoglycerate dehydrogenase
275	 56.17	0	365477..366610	-	377	163845878	-	Caur_0281	-	hypothetical protein
276	 63.54	+1	366863..367246	-	127	163845879	-	Caur_0282	-	helix-turn-helix Fis-type
277	 67.74	+2	367288..368313	-	341	163845880	-	Caur_0283	-	zinc finger CHC2-family protein
278	 66.43	+2	368429..370912	-	827	163845881	-	Caur_0284	-	hypothetical protein
279	 54.92	0	371491..372018	-	175	163845882	-	Caur_0285	-	hypothetical protein
280	 67.58	+2	372098..372427	-	109	163845883	-	Caur_0286	-	hypothetical protein
281	 67.47	+2	372641..373387	-	248	163845884	-	Caur_0287	-	hypothetical protein
282	 65.67	+2	373384..374895	-	503	163845885	-	Caur_0288	-	hypothetical protein
283	 67.14	+2	375155..375367	-	70	163845886	-	Caur_0289	-	hypothetical protein
284	 61.60	+1	375521..375757	-	78	163845887	-	Caur_0290	-	XRE family transcriptional regulator
285	 56.63	0	375923..377446	+	507	163845888	-	Caur_0291	-	resolvase domain-containing protein
286	 57.83	0	378519..379559	-	346	163845889	-	Caur_0293	-	vitamin K epoxide reductase
287	 56.32	0	379922..381352	+	476	163845890	-	Caur_0294	-	hypothetical protein
288	 56.16	0	381515..382009	+	164	163845891	-	Caur_0295	-	hypothetical protein
289	 60.18	0	382247..383155	+	302	163845892	-	Caur_0296	-	hypothetical protein
290	 56.53	0	383184..384170	+	328	163845893	-	Caur_0297	-	hypothetical protein
291	 58.90	0	384353..386542	+	729	163845894	-	Caur_0298	-	polymorphic outer membrane protein
292	 57.68	0	388020..390056	+	678	163845895	-	Caur_0299	-	hypothetical protein
293	 60.82	+1	390067..390357	+	96	163845896	-	Caur_0300	-	hypothetical protein
294	 64.40	+2	390570..391142	-	190	163845897	-	Caur_0301	-	2'-5' RNA ligase
295	 59.90	0	391419..392201	-	260	163845898	-	Caur_0302	-	DSBA oxidoreductase
296	 59.17	0	392574..394946	-	790	163845899	-	Caur_0303	-	ATP-dependent protease La
297	 57.60	0	394943..395350	-	135	163845900	-	Caur_0304	-	molecular chaperone (small heat shock protein)-like protein
298	 52.87	-1	395369..395629	-	86	163845901	-	Caur_0305	-	hypothetical protein
299	 54.72	0	395749..396066	-	105	163845902	-	Caur_0306	-	hypothetical protein
300	 57.85	0	396085..397275	-	396	163845903	-	Caur_0307	-	2-alkenal reductase
301	 60.63	+1	397414..398340	-	308	163845904	-	Caur_0308	-	chaperone DnaJ domain-containing protein
302	 59.81	0	398453..399634	-	393	163845905	-	Caur_0309	-	hypothetical protein
303	 56.31	0	399655..399876	-	73	163845906	-	Caur_0310	-	hypothetical protein
304	 56.94	0	400127..401062	+	311	163845907	-	Caur_0311	-	band 7 protein
305	 50.84	-1	401713..403020	+	435	163845908	-	Caur_0312	-	periplasmic binding protein
306	 51.21	-1	403030..403359	+	109	163845909	-	Caur_0313	-	ferredoxin-like protein
307	 52.53	-1	403374..404462	+	362	163845910	-	Caur_0314	-	transport system permease protein
308	 52.55	-1	404459..405535	+	358	163845911	-	Caur_0315	-	ABC transporter related
309	 50.17	-1	405504..406079	+	191	163845912	-	Caur_0316	-	hypothetical protein
310	 55.64	0	406302..406709	-	135	163845913	-	Caur_0317	-	hypothetical protein
311	 52.04	-1	406719..407675	-	318	163845914	-	Caur_0318	-	periplasmic binding protein
312	 56.42	0	407692..408267	-	191	163845915	-	Caur_0319	-	hypothetical protein
313	 50.79	-1	408360..408932	-	190	163845916	-	Caur_0320	-	flavodoxin
314	 40.10	-2	409856..410476	+	206	163845917	-	Caur_0321	-	restriction endonuclease R XbaI
315	 41.73	-2	410488..411690	+	400	163845918	-	Caur_0322	-	DNA methylase N-4/N-6 domain-containing protein
316	 54.95	0	412364..413473	-	369	163845919	-	Caur_0323	-	ABC transporter related
317	 58.20	0	413496..415220	-	574	163845920	-	Caur_0324	-	binding-protein-dependent transport systems inner membrane component
318	 55.17	0	415261..416391	-	376	163845921	-	Caur_0325	-	extracellular solute-binding protein
319	 58.79	0	416608..417420	-	270	163845922	-	Caur_0326	-	hypothetical protein
320	 54.52	0	417462..417782	-	106	163845923	-	Caur_0327	-	cupin 2 domain-containing protein
321	 56.38	0	419279..420406	+	375	163845924	-	Caur_0328	-	pyruvate carboxyltransferase
322	 60.86	+1	420422..421678	+	418	163845925	-	Caur_0329	-	3-isopropylmalate dehydratase large subunit
323	 57.88	0	421701..422201	+	166	163845926	-	Caur_0330	-	3-isopropylmalate dehydratase small subunit
324	 60.06	0	422201..423199	+	332	163845927	-	Caur_0331	-	3-isopropylmalate dehydrogenase
325	 58.33	0	423214..423381	+	55	163845928	-	Caur_0332	-	lysine biosynthesis protein LysW
326	 60.12	0	423425..423592	+	55	163845929	-	Caur_0333	-	lysine biosynthesis protein LysW
327	 56.54	0	423655..424503	+	282	163845930	-	Caur_0334	-	lysine biosynthesis enzyme LysX
328	 59.61	0	424633..425667	+	344	163845931	-	Caur_0335	-	N-acetyl-gamma-glutamyl-phosphate reductase
329	 60.81	+1	425782..426054	-	90	163845932	-	Caur_0336	-	hypothetical protein
330	 56.53	0	427180..428205	-	341	163845933	-	Caur_0337	-	band 7 protein
331	 53.73	0	428220..429239	-	339	163845934	-	Caur_0338	-	glycosyl transferase family protein
332	 51.87	-1	429574..431100	+	508	163845935	-	Caur_0339	-	DNA mismatch repair protein MutS domain-containing protein
333	 51.32	-1	431097..432614	+	505	163845936	-	Caur_0340	-	DNA mismatch repair protein MutS domain-containing protein
334	 56.59	0	433144..435972	-	942	163845937	-	Caur_0341	-	DNA polymerase I
335	 58.73	0	436119..437177	+	352	163845938	-	Caur_0342	-	histone deacetylase superfamily protein
336	 57.28	0	437174..437812	+	212	163845939	-	Caur_0343	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
337	 58.54	0	437815..438540	+	241	163845940	-	Caur_0344	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
338	 54.83	0	438609..439706	+	365	163845941	-	Caur_0345	-	hypothetical protein
339	 59.57	0	440235..441263	-	342	163845942	-	Caur_0346	-	putative RNA methylase
340	 61.79	+1	441394..442665	+	423	163845943	-	Caur_0347	-	hypothetical protein
341	 60.50	+1	442830..443591	-	253	163845944	-	Caur_0348	-	tRNA (guanine-N1)-methyltransferase
342	 55.92	0	443597..444508	-	303	163845945	-	Caur_0349	-	alpha/beta hydrolase fold-containing protein
343	 54.42	0	444518..445105	-	195	163845946	-	Caur_0350	-	GCN5-related N-acetyltransferase
344	 59.37	0	445343..446233	+	296	163845947	-	Caur_0351	-	tRNA delta(2)-isopentenylpyrophosphate transferase
345	 55.97	0	446203..447006	-	267	163845948	-	Caur_0352	-	RDD domain-containing protein
346	 56.34	0	447003..447680	-	225	163845949	-	Caur_0353	-	phosphoglycerate mutase
347	 59.10	0	448020..449645	+	541	163845950	-	Caur_0354	-	thymidylate synthase complementing protein ThyX
348	 59.05	0	449835..450569	-	244	163845951	-	Caur_0355	-	LmbE family protein
349	 58.33	0	450699..451310	-	203	163845952	-	Caur_0356	-	ferredoxin
350	 58.31	0	451481..452401	+	306	163845953	-	Caur_0357	-	phospholipid/glycerol acyltransferase
351	 56.32	0	453611..454219	+	202	163845954	-	Caur_0359	-	GTP cyclohydrolase II
352	 47.25	-2	454251..455486	-	411	163845955	-	Caur_0360	-	glycoside hydrolase family protein
353	 48.69	-2	455634..458492	-	952	163845956	-	Caur_0361	-	alpha-L-rhamnosidase
354	 38.52	-2	458521..459387	-	288	163845957	-	Caur_0362	-	binding-protein-dependent transport systems inner membrane component
355	 40.34	-2	459399..460283	-	294	163845958	-	Caur_0363	-	binding-protein-dependent transport systems inner membrane component
356	 46.33	-2	460430..461776	-	448	163845959	-	Caur_0364	-	extracellular solute-binding protein
357	 45.73	-2	462031..463071	-	346	163845960	-	Caur_0365	-	periplasmic binding protein/LacI transcriptional regulator
358	 64.02	+1	463509..463772	+	87	163845961	-	Caur_0366	-	hypothetical protein
359	 50.40	-1	463963..464589	-	208	163845962	-	Caur_0367	-	hypothetical protein
360	 56.68	0	464693..465463	-	256	163845963	-	Caur_0368	-	xylose isomerase domain-containing protein
361	 56.54	0	465894..469082	-	1062	163845964	-	Caur_0369	-	peptidase S41
362	 61.34	+1	469242..470030	-	262	163845965	-	Caur_0370	-	short-chain dehydrogenase/reductase SDR
363	 57.64	0	470049..470990	-	313	163845966	-	Caur_0371	-	pyruvate carboxyltransferase
364	 56.47	0	471261..471809	+	182	163845967	-	Caur_0372	-	hypothetical protein
365	 56.18	0	471908..472708	-	266	163845968	-	Caur_0373	-	phosphomethylpyrimidine kinase
366	 56.37	0	472705..473355	-	216	163845969	-	Caur_0374	-	thiamine-phosphate pyrophosphorylase
367	 60.12	0	473383..474192	-	269	163845970	-	Caur_0375	-	hydroxyethylthiazole kinase
368	 58.00	0	475047..476720	-	557	163845971	-	Caur_0376	-	3-oxosteroid 1-dehydrogenase
369	 51.22	-1	476743..477564	-	273	163845972	-	Caur_0377	-	short-chain dehydrogenase/reductase SDR
370	 50.40	-1	477870..478859	-	329	163845973	-	Caur_0378	-	aminoglycoside phosphotransferase
371	 61.01	+1	478967..481228	-	753	163845974	-	Caur_0379	-	glycoside hydrolase family 3 protein
372	 56.17	0	481331..482578	-	415	163845975	-	Caur_0380	-	major facilitator transporter
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.