IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3139	 56.08	0	4304216..4304470	+	84	163848742	-	Caur_3203	-	hypothetical protein
3140	 53.25	0	4305196..4306119	+	307	163848743	-	Caur_3204	-	LysR substrate-binding
3141	 56.14	0	4306354..4306638	-	94	163848744	-	Caur_3205	-	hypothetical protein
3142	 58.29	0	4306750..4307835	+	361	163848745	-	Caur_3206	-	DNA protecting protein DprA
3143	 57.38	0	4307854..4308327	-	157	163848746	-	Caur_3207	-	NUDIX hydrolase
3144	 52.63	-1	4308779..4309234	-	151	163848747	-	Caur_3208	-	hypothetical protein
3145	 63.92	+1	4309465..4310157	-	230	163848748	-	Caur_3209	-	hypothetical protein
3146	 53.07	0	4310378..4310686	-	102	163848749	-	Caur_3210	-	hypothetical protein
3147	 44.10	-2	4313787..4314362	-	191	163848750	-	Caur_3214	-	hypothetical protein
3148	 67.31	+2	4314596..4315378	-	260	163848751	-	Caur_3215	-	hypothetical protein
3149	 61.11	+1	4315505..4315810	-	101	163848752	-	Caur_3216	-	hypothetical protein
3150	 60.98	+1	4316237..4316482	-	81	163848753	-	Caur_3217	-	hypothetical protein
3151	 57.84	0	4316866..4317318	-	150	163848754	-	Caur_3218	-	hypothetical protein
3152	 58.01	0	4317359..4323634	-	2091	163848755	-	Caur_3219	-	YD repeat-/RHS repeat-containing protein
3153	 60.98	+1	4324297..4325475	-	392	163848756	-	Caur_3220	-	acetyl-CoA acetyltransferase
3154	 59.07	0	4325733..4328153	-	806	163848757	-	Caur_3221	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
3155	 58.05	0	4328387..4328827	+	146	163848758	-	Caur_3222	-	rrf2 family transcriptional regulator
3156	 56.22	0	4329451..4330302	-	283	163848759	-	Caur_3223	-	hypothetical protein
3157	 57.37	0	4330299..4330922	-	207	163848760	-	Caur_3224	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
3158	 54.82	0	4330965..4331327	-	120	163848761	-	Caur_3225	-	DNA polymerase beta subunit
3159	 50.77	-1	4331272..4331661	-	129	163848762	-	Caur_3226	-	HEPN domain-containing protein
3160	 58.28	0	4332561..4333049	+	162	163848763	-	Caur_3227	-	hypothetical protein
3161	 58.63	0	4333053..4333799	+	248	163848764	-	Caur_3228	-	chromosome segregation and condensation protein ScpA
3162	 60.08	0	4333847..4336033	+	728	163848765	-	Caur_3229	-	histidine kinase dimerisation and phosphoacceptor region
3163	 56.01	0	4336113..4336769	+	218	163848766	-	Caur_3230	-	response regulator receiver
3164	 60.03	0	4336769..4337536	+	255	163848767	-	Caur_3231	-	beta-lactamase domain-containing protein
3165	 56.34	0	4337843..4338055	-	70	163848768	-	Caur_3232	-	hypothetical protein
3166	 54.37	0	4338052..4338531	-	159	163848769	-	Caur_3233	-	hypothetical protein
3167	 65.83	+2	4338959..4339555	+	198	163848770	-	Caur_3235	-	hypothetical protein
3168	 60.34	0	4340828..4341997	+	389	163848771	-	Caur_3237	-	extracellular solute-binding protein
3169	 49.88	-1	4342199..4343401	+	400	163848772	-	Caur_3238	-	polar amino acid ABC transporter, inner membrane subunit
3170	 56.53	0	4343412..4344644	+	410	163848773	-	Caur_3239	-	polar amino acid ABC transporter, inner membrane subunit
3171	 53.33	0	4344734..4345483	+	249	163848774	-	Caur_3240	-	ABC transporter related
3172	 57.21	0	4345847..4347094	-	415	163848775	-	Caur_3241	-	glycosyl transferase group 1
3173	 56.60	0	4347094..4347669	-	191	163848776	-	Caur_3242	-	hypothetical protein
3174	 55.71	0	4348658..4349095	+	145	163848777	-	Caur_3244	-	hypothetical protein
3175	 57.32	0	4349166..4349657	+	163	163848778	-	Caur_3245	-	septum formation initiator
3176	 53.23	0	4349682..4353134	-	1150	163848779	-	Caur_3246	-	ATPase-like protein
3177	 62.44	+1	4353302..4354888	+	528	163848780	-	Caur_3247	-	pseudouridine synthase
3178	 56.44	0	4355006..4355494	+	162	163848781	-	Caur_3248	-	blue (type1) copper domain-containing protein
3179	 54.98	0	4356258..4357190	+	310	163848782	-	Caur_3249	-	peptidase C60 sortase A and B
3180	 59.72	0	4357187..4357402	-	71	163848783	-	Caur_3250	-	DNA binding domain-containing protein
3181	 50.94	-1	4357448..4358515	-	355	163848784	-	Caur_3251	-	methyltransferase type 11
3182	 54.36	0	4358576..4359217	-	213	163848785	-	Caur_3252	-	hypothetical protein
3183	 56.71	0	4359229..4360383	-	384	163848786	-	Caur_3253	-	glycosyl transferase group 1
3184	 51.89	-1	4360386..4361441	-	351	163848787	-	Caur_3254	-	hypothetical protein
3185	 52.65	-1	4361530..4362492	-	320	163848788	-	Caur_3255	-	NAD-dependent epimerase/dehydratase
3186	 56.55	0	4362489..4363961	-	490	163848789	-	Caur_3256	-	O-antigen polymerase
3187	 52.73	-1	4363961..4365460	-	499	163848790	-	Caur_3257	-	exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
3188	 59.06	0	4365830..4370431	-	1533	163848791	-	Caur_3258	-	glutamate synthase (ferredoxin)
3189	 44.56	-2	4370725..4371009	+	94	163848792	-	Caur_3259	-	hypothetical protein
3190	 53.22	0	4371177..4372046	-	289	163848793	-	Caur_3260	-	chaperone DnaJ domain-containing protein
3191	 56.94	0	4372420..4374219	+	599	163848794	-	Caur_3261	-	5'-nucleotidase domain-containing protein
3192	 53.17	0	4374362..4375102	-	246	163848795	-	Caur_3262	-	short-chain dehydrogenase/reductase SDR
3193	 53.30	0	4375265..4376371	-	368	163848796	-	Caur_3263	-	alpha/beta hydrolase fold-containing protein
3194	 57.29	0	4376384..4376863	-	159	163848797	-	Caur_3264	-	hypothetical protein
3195	 55.90	0	4377195..4378169	-	324	163848798	-	Caur_3265	-	abortive infection protein
3196	 53.27	0	4379347..4379652	+	101	163848799	-	Caur_3266	-	regulatory protein ArsR
3197	 54.05	0	4379645..4380286	+	213	163848800	-	Caur_3267	-	hypothetical protein
3198	 56.16	0	4380319..4381260	+	313	163848801	-	Caur_3268	-	abortive infection protein
3199	 48.33	-2	4381570..4382049	+	159	163848802	-	Caur_3269	-	hypothetical protein
3200	 51.68	-1	4382092..4387416	+	1774	163848803	-	Caur_3270	-	bacillolysin
3201	 54.09	0	4387532..4388557	-	341	163848804	-	Caur_3271	-	MscS mechanosensitive ion channel
3202	 54.27	0	4388597..4389838	+	413	163848805	-	Caur_3272	-	hypothetical protein
3203	 56.74	0	4389875..4391143	+	422	163848806	-	Caur_3273	-	methionine gamma-lyase
3204	 53.85	0	4392229..4393437	+	402	163848807	-	Caur_3274	-	PAS sensor protein
3205	 49.65	-1	4393467..4393748	+	93	163848808	-	Caur_3275	-	KaiB domain-containing protein
3206	 53.45	0	4393785..4395320	+	511	163848809	-	Caur_3276	-	circadian clock protein KaiC
3207	 54.29	0	4395363..4397900	+	845	163848810	-	Caur_3277	-	diguanylate cyclase
3208	 57.39	0	4398053..4398871	-	272	163848811	-	Caur_3278	-	short-chain dehydrogenase/reductase SDR
3209	 59.29	0	4398912..4400036	-	374	163848812	-	Caur_3279	-	ATPase involved in chromosome partitioning-like protein
3210	 57.90	0	4400204..4400842	+	212	163848813	-	Caur_3280	-	formiminotransferase-cyclodeaminase
3211	 59.67	0	4400839..4401696	+	285	163848814	-	Caur_3281	-	methenyltetrahydrofolate cyclohydrolase
3212	 56.40	0	4401882..4403186	+	434	163848815	-	Caur_3282	-	phosphoribosylamine--glycine ligase
3213	 55.48	0	4403230..4403658	+	142	163848816	-	Caur_3283	-	GCN5-related N-acetyltransferase
3214	 59.17	0	4404329..4404808	+	159	163848817	-	Caur_3284	-	poly(hydroxyalkanoate) granule-associated protein
3215	 54.71	0	4404918..4405511	+	197	163848818	-	Caur_3285	-	PHA accumulation regulator DNA-binding protein
3216	 54.11	0	4405700..4406917	+	405	163848819	-	Caur_3286	-	patatin
3217	 56.49	0	4406919..4408127	+	402	163848820	-	Caur_3287	-	glycosyl transferase group 1
3218	 55.84	0	4408817..4410709	-	630	163848821	-	Caur_3288	-	WD-40 repeat-containing protein
3219	 58.76	0	4411002..4412228	-	408	163848822	-	Caur_3289	-	sn-glycerol-3-phosphate dehydrogenase subunit C
3220	 61.74	+1	4412251..4413489	-	412	163848823	-	Caur_3290	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
3221	 56.73	0	4413507..4415177	-	556	163848824	-	Caur_3291	-	glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
3222	 57.58	0	4415264..4416760	-	498	163848825	-	Caur_3292	-	glycerol kinase
3223	 57.36	0	4416809..4417453	-	214	163848826	-	Caur_3293	-	dihydroxyacetone kinase, L subunit
3224	 57.86	0	4417516..4418514	-	332	163848827	-	Caur_3294	-	dihydroxyacetone kinase, DhaK subunit
3225	 57.69	0	4418570..4419304	-	244	163848828	-	Caur_3295	-	major intrinsic protein
3226	 58.75	0	4419783..4421513	-	576	163848829	-	Caur_3296	-	hypothetical protein
3227	 58.30	0	4421461..4424952	-	1163	163848830	-	Caur_3297	-	alpha-2-macroglobulin domain-containing protein
3228	 56.22	0	4425397..4426401	-	334	163848831	-	Caur_3298	-	aminoglycoside phosphotransferase
3229	 60.13	0	4426536..4427315	+	259	163848832	-	Caur_3299	-	sugar fermentation stimulation protein
3230	 58.09	0	4427332..4428054	-	240	163848833	-	Caur_3300	-	GDSL family lipase
3231	 61.76	+1	4428615..4429817	-	400	163848834	-	Caur_3301	-	major facilitator transporter
3232	 61.72	+1	4429868..4430797	-	309	163848835	-	Caur_3302	-	luciferase family protein
3233	 59.85	0	4430884..4431294	+	136	163848836	-	Caur_3303	-	AIG2 family protein
3234	 58.28	0	4431301..4432206	+	301	163848837	-	Caur_3304	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
3235	 59.09	0	4432212..4433267	+	351	163848838	-	Caur_3305	-	agmatine deiminase
3236	 57.98	0	4433495..4433920	-	141	163848839	-	Caur_3307	-	hypothetical protein
3237	 57.75	0	4433937..4435304	-	455	163848840	-	Caur_3308	-	hypothetical protein
3238	 56.56	0	4435334..4437133	-	599	163848841	-	Caur_3309	-	hypothetical protein
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.