IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3100	 58.73	0	4244670..4245299	-	209	163848703	-	Caur_3162	-	phosphoglycerate mutase
3101	 57.54	0	4245339..4246478	-	379	163848704	-	Caur_3163	-	acyl-CoA dehydrogenase domain-containing protein
3102	 62.37	+1	4246548..4247315	-	255	163848705	-	Caur_3164	-	alpha/beta hydrolase fold-containing protein
3103	 55.67	0	4247315..4247596	-	93	163848706	-	Caur_3165	-	transcriptional coactivator/pterin dehydratase
3104	 56.15	0	4247827..4248615	-	262	163848707	-	Caur_3166	-	DSBA oxidoreductase
3105	 64.02	+1	4249721..4249984	-	87	163848708	-	Caur_3167	-	hypothetical protein
3106	 58.85	0	4251837..4252463	-	208	163848709	-	Caur_3169	-	DNA binding domain-containing protein
3107	 57.88	0	4252569..4253399	-	276	163848710	-	Caur_3170	-	nitroreductase
3108	 56.70	0	4253954..4255930	-	658	163848711	-	Caur_3171	-	ATPase central domain-containing protein
3109	 57.52	0	4256086..4256883	+	265	163848712	-	Caur_3172	-	extracellular solute-binding protein
3110	 54.13	0	4257150..4257827	-	225	163848713	-	Caur_3173	-	response regulator receiver
3111	 56.69	0	4257824..4260388	-	854	163848714	-	Caur_3174	-	ATPase domain-containing protein
3112	 54.15	0	4260478..4261524	+	348	163848715	-	Caur_3175	-	amidohydrolase 2
3113	 55.98	0	4261538..4262314	+	258	163848716	-	Caur_3176	-	hypothetical protein
3114	 55.17	0	4262328..4263371	+	347	163848717	-	Caur_3177	-	alcohol dehydrogenase
3115	 56.61	0	4263717..4264541	-	274	163848718	-	Caur_3178	-	hypothetical protein
3116	 55.74	0	4264699..4270995	-	2098	163848719	-	Caur_3179	-	Cna B domain-containing protein
3117	 57.98	0	4271195..4272484	-	429	163848720	-	Caur_3180	-	hypothetical protein
3118	 70.67	+2	4272663..4272962	+	99	163848721	-	Caur_3181	-	hypothetical protein
3119	 57.81	0	4273101..4274591	+	496	163848722	-	Caur_3182	-	4-alpha-glucanotransferase
3120	 58.36	0	4274935..4276017	-	360	163848723	-	Caur_3183	-	sigma-70 family RNA polymerase sigma factor
3121	 60.34	0	4276184..4276894	-	236	163848724	-	Caur_3184	-	short-chain dehydrogenase/reductase SDR
3122	 56.91	0	4277243..4278370	+	375	163848725	-	Caur_3185	-	Sulfate transporter/antisigma-factor antagonist STAS
3123	 59.31	0	4278661..4279530	-	289	163848726	-	Caur_3186	-	6-phosphogluconate dehydrogenase NAD-binding
3124	 61.50	+1	4279527..4280882	-	451	163848727	-	Caur_3187	-	SAF domain-containing protein
3125	 60.02	0	4280975..4282177	+	400	163848728	-	Caur_3188	-	hypothetical protein
3126	 56.89	0	4282149..4283069	+	306	163848729	-	Caur_3189	-	hypothetical protein
3127	 59.22	0	4283219..4285072	+	617	163848730	-	Caur_3190	-	von Willebrand factor type A
3128	 60.32	0	4285069..4287606	+	845	163848731	-	Caur_3191	-	von Willebrand factor type A
3129	 62.10	+1	4287751..4288800	+	349	163848732	-	Caur_3192	-	beta-lactamase
3130	 56.43	0	4289007..4289387	+	126	163848733	-	Caur_3193	-	putative thiol-disulphide oxidoreductase DCC
3131	 56.10	0	4291987..4292715	-	242	163848734	-	Caur_3195	-	NUDIX hydrolase
3132	 56.78	0	4292776..4293756	-	326	163848735	-	Caur_3196	-	glucokinase
3133	 56.55	0	4293837..4294508	-	223	163848736	-	Caur_3197	-	ribulose-phosphate 3-epimerase
3134	 59.31	0	4294561..4295280	-	239	163848737	-	Caur_3198	-	ribose 5-phosphate isomerase
3135	 55.12	0	4295311..4297068	-	585	163848738	-	Caur_3199	-	peptidase M61 domain-containing protein
3136	 58.25	0	4298393..4299331	-	312	163848739	-	Caur_3200	-	uncharacterized component of anaerobic dehydrogenase-like protein
3137	 57.79	0	4299328..4302291	-	987	163848740	-	Caur_3201	-	nitrate reductase
3138	 57.68	0	4302305..4303984	-	559	163848741	-	Caur_3202	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
3139	 56.08	0	4304216..4304470	+	84	163848742	-	Caur_3203	-	hypothetical protein
3140	 53.25	0	4305196..4306119	+	307	163848743	-	Caur_3204	-	LysR substrate-binding
3141	 56.14	0	4306354..4306638	-	94	163848744	-	Caur_3205	-	hypothetical protein
3142	 58.29	0	4306750..4307835	+	361	163848745	-	Caur_3206	-	DNA protecting protein DprA
3143	 57.38	0	4307854..4308327	-	157	163848746	-	Caur_3207	-	NUDIX hydrolase
3144	 52.63	-1	4308779..4309234	-	151	163848747	-	Caur_3208	-	hypothetical protein
3145	 63.92	+1	4309465..4310157	-	230	163848748	-	Caur_3209	-	hypothetical protein
3146	 53.07	0	4310378..4310686	-	102	163848749	-	Caur_3210	-	hypothetical protein
3147	 44.10	-2	4313787..4314362	-	191	163848750	-	Caur_3214	-	hypothetical protein
3148	 67.31	+2	4314596..4315378	-	260	163848751	-	Caur_3215	-	hypothetical protein
3149	 61.11	+1	4315505..4315810	-	101	163848752	-	Caur_3216	-	hypothetical protein
3150	 60.98	+1	4316237..4316482	-	81	163848753	-	Caur_3217	-	hypothetical protein
3151	 57.84	0	4316866..4317318	-	150	163848754	-	Caur_3218	-	hypothetical protein
3152	 58.01	0	4317359..4323634	-	2091	163848755	-	Caur_3219	-	YD repeat-/RHS repeat-containing protein
3153	 60.98	+1	4324297..4325475	-	392	163848756	-	Caur_3220	-	acetyl-CoA acetyltransferase
3154	 59.07	0	4325733..4328153	-	806	163848757	-	Caur_3221	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
3155	 58.05	0	4328387..4328827	+	146	163848758	-	Caur_3222	-	rrf2 family transcriptional regulator
3156	 56.22	0	4329451..4330302	-	283	163848759	-	Caur_3223	-	hypothetical protein
3157	 57.37	0	4330299..4330922	-	207	163848760	-	Caur_3224	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
3158	 54.82	0	4330965..4331327	-	120	163848761	-	Caur_3225	-	DNA polymerase beta subunit
3159	 50.77	-1	4331272..4331661	-	129	163848762	-	Caur_3226	-	HEPN domain-containing protein
3160	 58.28	0	4332561..4333049	+	162	163848763	-	Caur_3227	-	hypothetical protein
3161	 58.63	0	4333053..4333799	+	248	163848764	-	Caur_3228	-	chromosome segregation and condensation protein ScpA
3162	 60.08	0	4333847..4336033	+	728	163848765	-	Caur_3229	-	histidine kinase dimerisation and phosphoacceptor region
3163	 56.01	0	4336113..4336769	+	218	163848766	-	Caur_3230	-	response regulator receiver
3164	 60.03	0	4336769..4337536	+	255	163848767	-	Caur_3231	-	beta-lactamase domain-containing protein
3165	 56.34	0	4337843..4338055	-	70	163848768	-	Caur_3232	-	hypothetical protein
3166	 54.37	0	4338052..4338531	-	159	163848769	-	Caur_3233	-	hypothetical protein
3167	 65.83	+2	4338959..4339555	+	198	163848770	-	Caur_3235	-	hypothetical protein
3168	 60.34	0	4340828..4341997	+	389	163848771	-	Caur_3237	-	extracellular solute-binding protein
3169	 49.88	-1	4342199..4343401	+	400	163848772	-	Caur_3238	-	polar amino acid ABC transporter, inner membrane subunit
3170	 56.53	0	4343412..4344644	+	410	163848773	-	Caur_3239	-	polar amino acid ABC transporter, inner membrane subunit
3171	 53.33	0	4344734..4345483	+	249	163848774	-	Caur_3240	-	ABC transporter related
3172	 57.21	0	4345847..4347094	-	415	163848775	-	Caur_3241	-	glycosyl transferase group 1
3173	 56.60	0	4347094..4347669	-	191	163848776	-	Caur_3242	-	hypothetical protein
3174	 55.71	0	4348658..4349095	+	145	163848777	-	Caur_3244	-	hypothetical protein
3175	 57.32	0	4349166..4349657	+	163	163848778	-	Caur_3245	-	septum formation initiator
3176	 53.23	0	4349682..4353134	-	1150	163848779	-	Caur_3246	-	ATPase-like protein
3177	 62.44	+1	4353302..4354888	+	528	163848780	-	Caur_3247	-	pseudouridine synthase
3178	 56.44	0	4355006..4355494	+	162	163848781	-	Caur_3248	-	blue (type1) copper domain-containing protein
3179	 54.98	0	4356258..4357190	+	310	163848782	-	Caur_3249	-	peptidase C60 sortase A and B
3180	 59.72	0	4357187..4357402	-	71	163848783	-	Caur_3250	-	DNA binding domain-containing protein
3181	 50.94	-1	4357448..4358515	-	355	163848784	-	Caur_3251	-	methyltransferase type 11
3182	 54.36	0	4358576..4359217	-	213	163848785	-	Caur_3252	-	hypothetical protein
3183	 56.71	0	4359229..4360383	-	384	163848786	-	Caur_3253	-	glycosyl transferase group 1
3184	 51.89	-1	4360386..4361441	-	351	163848787	-	Caur_3254	-	hypothetical protein
3185	 52.65	-1	4361530..4362492	-	320	163848788	-	Caur_3255	-	NAD-dependent epimerase/dehydratase
3186	 56.55	0	4362489..4363961	-	490	163848789	-	Caur_3256	-	O-antigen polymerase
3187	 52.73	-1	4363961..4365460	-	499	163848790	-	Caur_3257	-	exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
3188	 59.06	0	4365830..4370431	-	1533	163848791	-	Caur_3258	-	glutamate synthase (ferredoxin)
3189	 44.56	-2	4370725..4371009	+	94	163848792	-	Caur_3259	-	hypothetical protein
3190	 53.22	0	4371177..4372046	-	289	163848793	-	Caur_3260	-	chaperone DnaJ domain-containing protein
3191	 56.94	0	4372420..4374219	+	599	163848794	-	Caur_3261	-	5'-nucleotidase domain-containing protein
3192	 53.17	0	4374362..4375102	-	246	163848795	-	Caur_3262	-	short-chain dehydrogenase/reductase SDR
3193	 53.30	0	4375265..4376371	-	368	163848796	-	Caur_3263	-	alpha/beta hydrolase fold-containing protein
3194	 57.29	0	4376384..4376863	-	159	163848797	-	Caur_3264	-	hypothetical protein
3195	 55.90	0	4377195..4378169	-	324	163848798	-	Caur_3265	-	abortive infection protein
3196	 53.27	0	4379347..4379652	+	101	163848799	-	Caur_3266	-	regulatory protein ArsR
3197	 54.05	0	4379645..4380286	+	213	163848800	-	Caur_3267	-	hypothetical protein
3198	 56.16	0	4380319..4381260	+	313	163848801	-	Caur_3268	-	abortive infection protein
3199	 48.33	-2	4381570..4382049	+	159	163848802	-	Caur_3269	-	hypothetical protein
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.