IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3023	 48.28	-2	4140700..4141047	+	115	163848626	-	Caur_3082	-	hypothetical protein
3024	 54.03	0	4141298..4142611	-	437	163848627	-	Caur_3083	-	diguanylate cyclase
3025	 62.81	+1	4142851..4144509	+	552	163848628	-	Caur_3084	-	DEAD/DEAH box helicase domain-containing protein
3026	 58.88	0	4144720..4145772	+	350	163848629	-	Caur_3085	-	Holliday junction DNA helicase B
3027	 59.23	0	4145775..4146554	+	259	163848630	-	Caur_3086	-	glycosyl transferase family protein
3028	 56.76	0	4147147..4148115	+	322	163848631	-	Caur_3087	-	homocysteine methyltransferase
3029	 57.29	0	4148108..4149046	+	312	163848632	-	Caur_3088	-	hypothetical protein
3030	 55.72	0	4149138..4149749	+	203	163848633	-	Caur_3089	-	hypothetical protein
3031	 54.10	0	4150074..4151147	-	357	163848634	-	Caur_3090	-	metal dependent phophohydrolase
3032	 56.77	0	4151969..4152847	-	292	163848635	-	Caur_3091	-	short-chain dehydrogenase/reductase SDR
3033	 56.55	0	4152978..4153412	-	144	163848636	-	Caur_3092	-	RpiB/LacA/LacB family sugar-phosphate isomerase
3034	 58.33	0	4153440..4153991	-	183	163848637	-	Caur_3093	-	metal-dependent phosphohydrolase
3035	 55.38	0	4154036..4154602	-	188	163848638	-	Caur_3094	-	peptide deformylase
3036	 56.07	0	4154824..4155738	+	304	163848639	-	Caur_3095	-	hypothetical protein
3037	 58.32	0	4155830..4159387	+	1185	163848640	-	Caur_3096	-	transcription-repair coupling factor
3038	 58.20	0	4159413..4160498	-	361	163848641	-	Caur_3097	-	hypothetical protein
3039	 53.70	0	4160727..4161374	+	215	163848642	-	Caur_3098	-	SNARE associated Golgi protein
3040	 56.11	0	4161393..4162718	+	441	163848643	-	Caur_3099	-	ATPase domain-containing protein
3041	 55.43	0	4162690..4163232	+	180	163848644	-	Caur_3100	-	NUDIX hydrolase
3042	 58.07	0	4163316..4163990	+	224	163848645	-	Caur_3101	-	putative methyltransferase
3043	 55.06	0	4164323..4164589	+	88	163848646	-	Caur_3102	-	hypothetical protein
3044	 54.66	0	4164860..4165267	+	135	163848647	-	Caur_3103	-	hypothetical protein
3045	 56.85	0	4165384..4166106	-	240	163848648	-	Caur_3104	-	LrgB family protein
3046	 54.26	0	4166113..4166499	-	128	163848649	-	Caur_3105	-	LrgA family protein
3047	 54.74	0	4166566..4167915	+	449	163848650	-	Caur_3106	-	small GTP-binding protein
3048	 54.92	0	4168038..4170200	+	720	163848651	-	Caur_3107	-	glycogen debranching enzyme GlgX
3049	 54.66	0	4170504..4173251	+	915	163848652	-	Caur_3108	-	PAS sensor protein
3050	 56.44	0	4173343..4173948	+	201	163848653	-	Caur_3109	-	PfpI family intracellular peptidase
3051	 56.89	0	4174126..4176969	+	947	163848654	-	Caur_3110	-	von Willebrand factor type A
3052	 56.03	0	4176973..4177320	+	115	163848655	-	Caur_3111	-	hypothetical protein
3053	 53.25	0	4177429..4179537	-	702	163848656	-	Caur_3112	-	UvrD/REP helicase
3054	 57.87	0	4179723..4180757	-	344	163848657	-	Caur_3113	-	hypothetical protein
3055	 49.54	-1	4180754..4181296	-	180	163848658	-	Caur_3114	-	RNA polymerase sigma-70 factor
3056	 61.11	+1	4181406..4182179	-	257	163848659	-	Caur_3115	-	hypothetical protein
3057	 60.34	0	4182457..4184604	-	715	163848660	-	Caur_3116	-	basic membrane lipoprotein
3058	 56.70	0	4184914..4185906	+	330	163848661	-	Caur_3117	-	band 7 protein
3059	 54.82	0	4185903..4186814	+	303	163848662	-	Caur_3118	-	band 7 protein
3060	 55.09	0	4186960..4187175	-	71	163848663	-	Caur_3119	-	prevent-host-death family protein
3061	 59.72	0	4187550..4187981	+	143	163848664	-	Caur_3120	-	heat shock protein Hsp20
3062	 55.80	0	4188153..4189118	+	321	163848665	-	Caur_3121	-	pyruvate dehydrogenase (acetyl-transferring)
3063	 56.88	0	4189140..4190171	+	343	163848666	-	Caur_3122	-	transketolase central region
3064	 59.14	0	4191120..4192355	+	411	163848667	-	Caur_3123	-	major facilitator transporter
3065	 61.24	+1	4192365..4192898	+	177	163848668	-	Caur_3124	-	shikimate kinase
3066	 58.31	0	4193487..4196072	-	861	163848669	-	Caur_3126	-	ATP-dependent chaperone ClpB
3067	 56.65	0	4196241..4196849	+	202	163848670	-	Caur_3127	-	helix-hairpin-helix DNA-binding class 1
3068	 58.81	0	4197162..4198586	+	474	163848671	-	Caur_3128	-	pyruvate kinase
3069	 55.08	0	4198936..4199850	+	304	163848672	-	Caur_3129	-	periplasmic binding protein
3070	 46.39	-2	4199897..4201780	+	627	163848673	-	Caur_3130	-	hypothetical protein
3071	 63.69	+1	4201851..4202657	+	268	163848674	-	Caur_3131	-	transposase IS4 family protein
3072	 54.81	0	4202757..4203338	-	193	163848675	-	Caur_3132	-	hypothetical protein
3073	 60.30	0	4203485..4203751	-	88	163848676	-	Caur_3133	-	hypothetical protein
3074	 63.84	+1	4204595..4205407	-	270	163848677	-	Caur_3134	-	hypothetical protein
3075	 58.68	0	4206217..4207731	-	504	163848678	-	Caur_3136	-	EmrB/QacA family drug resistance transporter
3076	 60.83	+1	4208616..4209626	-	336	163848679	-	Caur_3137	-	patatin
3077	 53.99	0	4210188..4210676	-	162	163848680	-	Caur_3138	-	hypothetical protein
3078	 54.58	0	4210701..4211180	-	159	163848681	-	Caur_3139	-	hypothetical protein
3079	 58.08	0	4211283..4212272	+	329	163848682	-	Caur_3140	-	helix-turn-helix domain-containing protein
3080	 55.52	0	4212431..4215103	+	890	163848683	-	Caur_3141	-	regulatory protein LuxR
3081	 55.81	0	4215307..4216089	-	260	163848684	-	Caur_3142	-	hypothetical protein
3082	 53.51	0	4216086..4216868	-	260	163848685	-	Caur_3143	-	abortive infection protein
3083	 48.56	-2	4217014..4217256	+	80	163848686	-	Caur_3144	-	hypothetical protein
3084	 48.83	-2	4217421..4217762	+	113	163848687	-	Caur_3145	-	hypothetical protein
3085	 52.38	-1	4217759..4218409	+	216	163848688	-	Caur_3146	-	hypothetical protein
3086	 54.07	0	4218409..4218924	+	171	163848689	-	Caur_3147	-	GCN5-related N-acetyltransferase
3087	 54.76	0	4218953..4220002	+	349	163848690	-	Caur_3148	-	beta-lactamase
3088	 55.88	0	4220155..4222287	-	710	163848691	-	Caur_3149	-	hypothetical protein
3089	 59.41	0	4222587..4225328	+	913	163848692	-	Caur_3150	-	aconitate hydratase 1
3090	 59.19	0	4225855..4229640	-	1261	163848693	-	Caur_3151	-	magnesium chelatase
3091	 59.85	0	4230859..4232163	+	434	163848694	-	Caur_3152	-	extracellular solute-binding protein
3092	 55.20	0	4232332..4233552	+	406	163848695	-	Caur_3153	-	binding-protein-dependent transport systems inner membrane component
3093	 53.31	0	4233549..4234394	+	281	163848696	-	Caur_3154	-	binding-protein-dependent transport systems inner membrane component
3094	 60.94	+1	4234401..4236512	+	703	163848697	-	Caur_3155	-	hypothetical protein
3095	 58.27	0	4236539..4237348	+	269	163848698	-	Caur_3156	-	putative esterase
3096	 54.57	0	4237415..4238464	+	349	163848699	-	Caur_3157	-	WD-40 repeat-containing protein
3097	 42.05	-2	4239166..4239819	-	217	163848700	-	Caur_3158	-	hypothetical protein
3098	 63.64	+1	4240791..4241846	-	351	163848701	-	Caur_3160	-	Sua5/YciO/YrdC/YwlC family protein
3099	 58.94	0	4241846..4244665	-	939	163848702	-	Caur_3161	-	phosphoenolpyruvate carboxylase
3100	 58.73	0	4244670..4245299	-	209	163848703	-	Caur_3162	-	phosphoglycerate mutase
3101	 57.54	0	4245339..4246478	-	379	163848704	-	Caur_3163	-	acyl-CoA dehydrogenase domain-containing protein
3102	 62.37	+1	4246548..4247315	-	255	163848705	-	Caur_3164	-	alpha/beta hydrolase fold-containing protein
3103	 55.67	0	4247315..4247596	-	93	163848706	-	Caur_3165	-	transcriptional coactivator/pterin dehydratase
3104	 56.15	0	4247827..4248615	-	262	163848707	-	Caur_3166	-	DSBA oxidoreductase
3105	 64.02	+1	4249721..4249984	-	87	163848708	-	Caur_3167	-	hypothetical protein
3106	 58.85	0	4251837..4252463	-	208	163848709	-	Caur_3169	-	DNA binding domain-containing protein
3107	 57.88	0	4252569..4253399	-	276	163848710	-	Caur_3170	-	nitroreductase
3108	 56.70	0	4253954..4255930	-	658	163848711	-	Caur_3171	-	ATPase central domain-containing protein
3109	 57.52	0	4256086..4256883	+	265	163848712	-	Caur_3172	-	extracellular solute-binding protein
3110	 54.13	0	4257150..4257827	-	225	163848713	-	Caur_3173	-	response regulator receiver
3111	 56.69	0	4257824..4260388	-	854	163848714	-	Caur_3174	-	ATPase domain-containing protein
3112	 54.15	0	4260478..4261524	+	348	163848715	-	Caur_3175	-	amidohydrolase 2
3113	 55.98	0	4261538..4262314	+	258	163848716	-	Caur_3176	-	hypothetical protein
3114	 55.17	0	4262328..4263371	+	347	163848717	-	Caur_3177	-	alcohol dehydrogenase
3115	 56.61	0	4263717..4264541	-	274	163848718	-	Caur_3178	-	hypothetical protein
3116	 55.74	0	4264699..4270995	-	2098	163848719	-	Caur_3179	-	Cna B domain-containing protein
3117	 57.98	0	4271195..4272484	-	429	163848720	-	Caur_3180	-	hypothetical protein
3118	 70.67	+2	4272663..4272962	+	99	163848721	-	Caur_3181	-	hypothetical protein
3119	 57.81	0	4273101..4274591	+	496	163848722	-	Caur_3182	-	4-alpha-glucanotransferase
3120	 58.36	0	4274935..4276017	-	360	163848723	-	Caur_3183	-	sigma-70 family RNA polymerase sigma factor
3121	 60.34	0	4276184..4276894	-	236	163848724	-	Caur_3184	-	short-chain dehydrogenase/reductase SDR
3122	 56.91	0	4277243..4278370	+	375	163848725	-	Caur_3185	-	Sulfate transporter/antisigma-factor antagonist STAS
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.