IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2733	 55.08	0	3732063..3732554	-	163	163848336	-	Caur_2789	-	hypothetical protein
2734	 56.65	0	3732551..3733528	-	325	163848337	-	Caur_2790	-	hypothetical protein
2735	 55.16	0	3733913..3734842	-	309	163848338	-	Caur_2791	-	glyoxalase/bleomycin resistance protein/dioxygenase
2736	 59.16	0	3736312..3737484	-	390	163848339	-	Caur_2793	-	hypothetical protein
2737	 52.55	-1	3737567..3737821	-	84	163848340	-	Caur_2794	-	ribosomal protein L28
2738	 59.02	0	3737890..3738255	-	121	163848341	-	Caur_2795	-	hypothetical protein
2739	 56.34	0	3738356..3739594	-	412	163848342	-	Caur_2796	-	cobalamin synthesis protein P47K
2740	 59.21	0	3740691..3742313	-	540	163848343	-	Caur_2797	-	YidE/YbjL duplication
2741	 51.26	-1	3742405..3742722	+	105	163848344	-	Caur_2798	-	hypothetical protein
2742	 56.56	0	3742804..3743535	+	243	163848345	-	Caur_2799	-	aromatic amino acid hydroxylase
2743	 55.12	0	3744007..3744855	-	282	163848346	-	Caur_2800	-	SCP-like extracellular
2744	 59.26	0	3746252..3748249	+	665	163848347	-	Caur_2801	-	N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
2745	 61.00	+1	3748265..3749023	+	252	163848348	-	Caur_2802	-	short-chain dehydrogenase/reductase SDR
2746	 56.73	0	3749036..3749689	+	217	163848349	-	Caur_2803	-	transaldolase
2747	 59.93	0	3749699..3750559	+	286	163848350	-	Caur_2804	-	phosphoribulokinase/uridine kinase
2748	 58.41	0	3750750..3753074	-	774	163848351	-	Caur_2805	-	transketolase central region
2749	 56.64	0	3754393..3755997	-	534	163848352	-	Caur_2806	-	hypothetical protein
2750	 48.87	-2	3756154..3756507	+	117	163848353	-	Caur_2807	-	response regulator receiver
2751	 57.11	0	3756633..3757427	+	264	163848354	-	Caur_2808	-	HAD family hydrolase
2752	 52.14	-1	3758128..3759153	+	341	163848355	-	Caur_2809	-	alcohol dehydrogenase
2753	 59.29	0	3759282..3760013	-	243	163848356	-	Caur_2810	-	HAD family hydrolase
2754	 56.76	0	3760160..3761128	+	322	163848357	-	Caur_2811	-	ATPase
2755	 58.21	0	3761139..3762569	+	476	163848358	-	Caur_2812	-	VWA containing CoxE family protein
2756	 55.11	0	3762808..3763404	-	198	163848359	-	Caur_2813	-	CDP-alcohol phosphatidyltransferase
2757	 52.27	-1	3763689..3765626	+	645	163848360	-	Caur_2814	-	hypothetical protein
2758	 46.83	-2	3765595..3765972	+	125	163848361	-	Caur_2815	-	response regulator receiver
2759	 54.18	0	3766008..3768881	+	957	163848362	-	Caur_2816	-	PAS sensor protein
2760	 53.16	0	3768874..3770457	+	527	163848363	-	Caur_2817	-	diguanylate cyclase
2761	 56.23	0	3770460..3771053	+	197	163848364	-	Caur_2818	-	endopeptidase Clp
2762	 59.94	0	3771028..3772113	-	361	163848365	-	Caur_2819	-	alpha/beta hydrolase fold-containing protein
2763	 60.56	+1	3772123..3773481	+	452	163848366	-	Caur_2820	-	tRNA modification GTPase TrmE
2764	 56.86	0	3773536..3774738	+	400	163848367	-	Caur_2821	-	phosphoglycerate kinase
2765	 55.46	0	3774900..3776246	-	448	163848368	-	Caur_2822	-	hypothetical protein
2766	 54.44	0	3776501..3777661	-	386	163848369	-	Caur_2823	-	PT repeat-containing protein
2767	 52.09	-1	3778324..3781848	+	1174	163848370	-	Caur_2824	-	histidine kinase
2768	 56.31	0	3781849..3782688	-	279	163848371	-	Caur_2825	-	SecC motif-containing protein
2769	 59.26	0	3782707..3783516	-	269	163848372	-	Caur_2826	-	hypothetical protein
2770	 54.19	0	3783513..3784121	-	202	163848373	-	Caur_2827	-	hypothetical protein
2771	 57.78	0	3784118..3787459	-	1113	163848374	-	Caur_2828	-	TPR repeat-containing protein
2772	 55.49	0	3788279..3788761	-	160	163848375	-	Caur_2829	-	peptidylprolyl isomerase
2773	 58.61	0	3788880..3790220	-	446	163848376	-	Caur_2830	-	von Willebrand factor type A
2774	 52.96	-1	3790263..3790634	-	123	163848377	-	Caur_2831	-	hypothetical protein
2775	 62.95	+1	3790661..3792625	-	654	163848378	-	Caur_2832	-	carbamoyl-phosphate synthase L chain ATP-binding
2776	 57.56	0	3792607..3793605	-	332	163848379	-	Caur_2833	-	luciferase family protein
2777	 59.66	0	3793723..3794436	-	237	163848380	-	Caur_2834	-	peptidase C60 sortase A and B
2778	 61.01	+1	3794591..3795262	+	223	163848381	-	Caur_2835	-	lipoate-protein ligase B
2779	 50.06	-1	3795370..3796941	-	523	163848382	-	Caur_2836	-	modification methylase NspV
2780	 51.14	-1	3797405..3797887	+	160	163848383	-	Caur_2837	-	carboxymuconolactone decarboxylase
2781	 51.97	-1	3797884..3798645	+	253	163848384	-	Caur_2838	-	diguanylate cyclase
2782	 56.68	0	3798741..3799661	+	306	163848385	-	Caur_2839	-	lipoyl synthase
2783	 57.54	0	3799794..3801206	+	470	163848386	-	Caur_2840	-	dihydrolipoamide dehydrogenase
2784	 56.57	0	3801361..3801855	+	164	163848387	-	Caur_2841	-	hypothetical protein
2785	 60.97	+1	3801989..3803410	-	473	163848388	-	Caur_2842	-	aromatic-L-amino-acid decarboxylase
2786	 55.95	0	3804133..3804384	-	83	163848389	-	Caur_2843	-	prevent-host-death family protein
2787	 56.24	0	3804618..3805730	+	370	163848390	-	Caur_2844	-	tRNA-guanine transglycosylase
2788	 57.18	0	3805723..3806523	+	266	163848391	-	Caur_2845	-	ribosomal RNA methyltransferase
2789	 56.39	0	3806789..3807265	-	158	163848392	-	Caur_2846	-	acid phosphatase
2790	 59.65	0	3807273..3808184	-	303	163848393	-	Caur_2847	-	metalloenzyme domain-containing protein
2791	 57.23	0	3809269..3810444	+	391	163848394	-	Caur_2848	-	RNA-binding S1 domain-containing protein
2792	 58.56	0	3810568..3811554	+	328	163848395	-	Caur_2849	-	ornithine cyclodeaminase
2793	 54.29	0	3811673..3813013	+	446	163848396	-	Caur_2850	-	nucleotide sugar dehydrogenase
2794	 57.71	0	3813189..3814874	+	561	163848397	-	Caur_2851	-	dihydroxy-acid dehydratase
2795	 60.88	+1	3814929..3815861	-	310	163848398	-	Caur_2852	-	hypothetical protein
2796	 60.24	0	3815900..3816568	+	222	163848399	-	Caur_2853	-	methyltransferase type 11
2797	 50.17	-1	3817051..3817341	-	96	163848400	-	Caur_2854	-	hypothetical protein
2798	 58.58	0	3817933..3819948	-	671	163848401	-	Caur_2855	-	glycogen debranching enzyme
2799	 58.96	0	3820006..3820848	+	280	163848402	-	Caur_2856	-	metallophosphoesterase
2800	 61.90	+1	3820863..3821198	+	111	163848403	-	Caur_2857	-	hypothetical protein
2801	 59.95	0	3821657..3825529	+	1290	163848404	-	Caur_2858	-	hypothetical protein
2802	 59.07	0	3826039..3826959	-	306	163848405	-	Caur_2859	-	2-dehydropantoate 2-reductase
2803	 58.51	0	3827023..3827745	+	240	163848406	-	Caur_2860	-	hypothetical protein
2804	 61.21	+1	3827736..3829274	+	512	163848407	-	Caur_2861	-	major facilitator transporter
2805	 60.23	0	3829333..3829845	+	170	163848408	-	Caur_2862	-	hypothetical protein
2806	 58.08	0	3830019..3830717	+	232	163848409	-	Caur_2863	-	response regulator receiver
2807	 56.60	0	3830793..3832004	+	403	163848410	-	Caur_2864	-	histidine kinase
2808	 57.71	0	3836508..3837266	-	252	163848411	-	Caur_2865	-	hypothetical protein
2809	 60.71	+1	3837464..3838168	-	234	163848412	-	Caur_2866	-	regulatory protein GntR HTH
2810	 63.44	+1	3838375..3839181	-	268	163848413	-	Caur_2867	-	transposase IS4 family protein
2811	 49.33	-2	3839737..3840111	-	124	163848414	-	Caur_2868	-	DNA polymerase beta subunit
2812	 45.54	-2	3840108..3840533	-	141	163848415	-	Caur_2869	-	HI0074 family nucleotidyltransferase substrate binding protein
2813	 43.49	-2	3840651..3841526	-	291	163848416	-	Caur_2870	-	PhzF family phenazine biosynthesis protein
2814	 56.14	0	3841694..3843346	-	550	163848417	-	Caur_2871	-	WD40 domain-containing protein
2815	 54.44	0	3843857..3844846	+	329	163848418	-	Caur_2872	-	galactose-1-phosphate uridylyltransferase
2816	 53.45	0	3844948..3845961	+	337	163848419	-	Caur_2873	-	hypothetical protein
2817	 55.57	0	3846039..3848138	+	699	163848420	-	Caur_2874	-	hypothetical protein
2818	 57.31	0	3848142..3851627	+	1161	163848421	-	Caur_2875	-	WD-40 repeat-containing protein
2819	 55.58	0	3851795..3856069	+	1424	163848422	-	Caur_2876	-	proprotein convertase P
2820	 57.09	0	3857217..3857717	+	166	163848423	-	Caur_2877	-	regulatory protein MarR
2821	 56.56	0	3857732..3859591	+	619	163848424	-	Caur_2878	-	ABC transporter related
2822	 58.43	0	3862256..3863068	+	270	163848425	-	Caur_2881	-	ribokinase-like domain-containing protein
2823	 56.14	0	3863162..3865222	+	686	163848426	-	Caur_2882	-	alpha amylase domain-containing protein
2824	 58.44	0	3865414..3866094	-	226	163848427	-	Caur_2883	-	haloacid dehalogenase, type II
2825	 62.31	+1	3866224..3866889	+	221	163848428	-	Caur_2884	-	hypothetical protein
2826	 58.15	0	3867043..3870390	-	1115	163848429	-	Caur_2885	-	peptidase S8 and S53 subtilisin kexin sedolisin
2827	 60.86	+1	3871440..3871973	+	177	163848430	-	Caur_2886	-	DoxX family protein
2828	 51.85	-1	3872032..3872328	+	98	163848431	-	Caur_2887	-	chaperonin Cpn10
2829	 58.18	0	3872334..3873971	+	545	163848432	-	Caur_2888	-	chaperonin GroEL
2830	 55.44	0	3874463..3875032	-	189	163848433	-	Caur_2889	-	translation elongation factor P
2831	 58.62	0	3875280..3876236	+	318	163848434	-	Caur_2890	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
2832	 59.57	0	3876324..3877520	+	398	163848435	-	Caur_2891	-	aminotransferase class I and II
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.