IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2616	 56.29	0	3573933..3575204	+	423	163848219	-	Caur_2668	-	type I phosphodiesterase/nucleotide pyrophosphatase
2617	 57.97	0	3575326..3576888	+	520	163848220	-	Caur_2669	-	hypothetical protein
2618	 61.86	+1	3576917..3577228	+	103	163848221	-	Caur_2670	-	DsbA oxidoreductase
2619	 56.94	0	3577247..3577678	+	143	163848222	-	Caur_2671	-	DsbA oxidoreductase
2620	 54.84	0	3578924..3579388	-	154	163848223	-	Caur_2673	-	regulatory protein MarR
2621	 59.19	0	3579887..3581197	+	436	163848224	-	Caur_2674	-	extracellular solute-binding protein
2622	 53.50	0	3581317..3582258	+	313	163848225	-	Caur_2675	-	binding-protein-dependent transport systems inner membrane component
2623	 54.05	0	3582271..3583110	+	279	163848226	-	Caur_2676	-	binding-protein-dependent transport systems inner membrane component
2624	 59.04	0	3583120..3584181	+	353	163848227	-	Caur_2677	-	galactose-1-phosphate uridylyltransferase
2625	 53.62	0	3584415..3585173	+	252	163848228	-	Caur_2678	-	hypothetical protein
2626	 51.98	-1	3585243..3585671	+	142	163848229	-	Caur_2679	-	hypothetical protein
2627	 56.35	0	3586399..3587658	+	419	163848230	-	Caur_2680	-	von Willebrand factor type A
2628	 56.60	0	3587660..3588424	+	254	163848231	-	Caur_2681	-	stationary-phase survival protein SurE
2629	 59.66	0	3588398..3589153	-	251	163848232	-	Caur_2682	-	hypothetical protein
2630	 59.10	0	3589355..3589909	-	184	163848233	-	Caur_2683	-	hypothetical protein
2631	 57.54	0	3590004..3591011	-	335	163848234	-	Caur_2684	-	squalene/phytoene synthase
2632	 55.59	0	3591137..3592084	-	315	163848235	-	Caur_2685	-	regulatory protein MerR
2633	 57.85	0	3592327..3593301	+	324	163848236	-	Caur_2686	-	NAD-dependent epimerase/dehydratase
2634	 55.88	0	3593412..3594524	+	370	163848237	-	Caur_2687	-	nucleotidyl transferase
2635	 54.76	0	3594996..3595415	-	139	163848238	-	Caur_2688	-	large conductance mechanosensitive channel protein
2636	 59.00	0	3595647..3595946	+	99	163848239	-	Caur_2689	-	hypothetical protein
2637	 55.19	0	3595972..3596433	+	153	163848240	-	Caur_2690	-	UspA domain-containing protein
2638	 57.29	0	3596823..3598934	+	703	163848241	-	Caur_2691	-	small GTP-binding protein
2639	 57.67	0	3599651..3602851	+	1066	163848242	-	Caur_2692	-	isoleucyl-tRNA synthetase
2640	 57.80	0	3603157..3604386	+	409	163848243	-	Caur_2693	-	2-alkenal reductase
2641	 60.55	+1	3604486..3605793	+	435	163848244	-	Caur_2694	-	histidinol dehydrogenase
2642	 48.45	-2	3605795..3606052	+	85	163848245	-	Caur_2695	-	protein of unknown function YGGT
2643	 55.73	0	3606215..3607888	+	557	163848246	-	Caur_2696	-	spermidine synthase-like protein
2644	 57.20	0	3608211..3608717	+	168	163848247	-	Caur_2697	-	HNH endonuclease
2645	 56.75	0	3608704..3609066	+	120	163848248	-	Caur_2698	-	hypothetical protein
2646	 61.20	+1	3609808..3613377	+	1189	163848249	-	Caur_2699	-	helicase domain-containing protein
2647	 62.35	+1	3613374..3616871	+	1165	163848250	-	Caur_2700	-	hypothetical protein
2648	 54.82	0	3616887..3618287	+	466	163848251	-	Caur_2701	-	hypothetical protein
2649	 51.03	-1	3618287..3618772	+	161	163848252	-	Caur_2702	-	hypothetical protein
2650	 61.68	+1	3618800..3622126	+	1108	163848253	-	Caur_2703	-	AAA family ATPase
2651	 61.97	+1	3622494..3623408	-	304	163848254	-	Caur_2704	-	diacylglycerol kinase catalytic region
2652	 63.31	+1	3623434..3624624	-	396	163848255	-	Caur_2705	-	tryptophan synthase subunit beta
2653	 57.18	0	3624731..3625078	-	115	163848256	-	Caur_2706	-	hypothetical protein
2654	 57.76	0	3625135..3626628	-	497	163848257	-	Caur_2707	-	metallophosphoesterase
2655	 62.84	+1	3626749..3627402	-	217	163848258	-	Caur_2708	-	phosphoribosylanthranilate isomerase
2656	 60.30	0	3627395..3629404	-	669	163848259	-	Caur_2709	-	hypothetical protein
2657	 60.74	+1	3629655..3630632	-	325	163848260	-	Caur_2710	-	glycosyl transferase family protein
2658	 53.90	0	3630698..3631441	-	247	163848261	-	Caur_2711	-	hypothetical protein
2659	 53.74	0	3631438..3632172	-	244	163848262	-	Caur_2712	-	ABC-2 type transporter
2660	 55.75	0	3632452..3633303	-	283	163848263	-	Caur_2713	-	ABC transporter related
2661	 55.45	0	3633342..3633992	-	216	163848264	-	Caur_2714	-	regulatory protein TetR
2662	 56.52	0	3634003..3634209	-	68	163848265	-	Caur_2715	-	hypothetical protein
2663	 60.25	0	3634500..3635294	+	264	163848266	-	Caur_2716	-	inositol-phosphate phosphatase
2664	 57.28	0	3635305..3636369	+	354	163848267	-	Caur_2717	-	radical SAM domain-containing protein
2665	 57.62	0	3636324..3636986	-	220	163848268	-	Caur_2718	-	ribosomal-protein-alanine acetyltransferase
2666	 55.80	0	3637085..3637912	-	275	163848269	-	Caur_2719	-	hypothetical protein
2667	 63.87	+1	3638867..3639652	-	261	163848270	-	Caur_2720	-	hypothetical protein
2668	 63.49	+1	3639972..3640757	-	261	163848271	-	Caur_2721	-	hypothetical protein
2669	 53.56	0	3641181..3642713	+	510	163848272	-	Caur_2722	-	YmdA/YtgF protein
2670	 59.70	0	3642839..3643240	+	133	163848273	-	Caur_2723	-	stage V sporulation protein S
2671	 56.30	0	3644235..3646076	+	613	163848274	-	Caur_2724	-	protein of unknown function DUF294 nucleotidyltransferase putative
2672	 56.94	0	3646085..3646783	+	232	163848275	-	Caur_2725	-	DNA polymerase III, epsilon subunit
2673	 57.11	0	3647235..3649076	+	613	163848276	-	Caur_2726	-	citrate transporter
2674	 58.01	0	3649083..3650492	-	469	163848277	-	Caur_2727	-	glycosyl hydrolase family 32 protein
2675	 56.46	0	3650897..3651817	-	306	163848278	-	Caur_2728	-	binding-protein-dependent transport systems inner membrane component
2676	 52.42	-1	3651814..3652950	-	378	163848279	-	Caur_2729	-	binding-protein-dependent transport systems inner membrane component
2677	 56.53	0	3653047..3654378	-	443	163848280	-	Caur_2730	-	extracellular solute-binding protein
2678	 55.33	0	3654487..3655518	-	343	163848281	-	Caur_2731	-	alanine racemase
2679	 57.05	0	3656831..3657880	-	349	163848282	-	Caur_2732	-	parB-like partition protein
2680	 58.43	0	3658891..3659631	+	246	163848283	-	Caur_2733	-	short-chain dehydrogenase/reductase SDR
2681	 58.06	0	3659734..3660813	+	359	163848284	-	Caur_2734	-	Sulfate transporter/antisigma-factor antagonist STAS
2682	 53.65	0	3661204..3661395	-	63	163848285	-	Caur_2735	-	hypothetical protein
2683	 60.37	0	3662446..3664080	-	544	163848286	-	Caur_2736	-	chaperonin GroEL
2684	 56.44	0	3664128..3664430	-	100	163848287	-	Caur_2737	-	chaperonin Cpn10
2685	 58.75	0	3665338..3665577	-	79	163848288	-	Caur_2738	-	hypothetical protein
2686	 55.06	0	3665877..3666617	+	246	163848289	-	Caur_2739	-	hypothetical protein
2687	 59.26	0	3668887..3669102	+	71	163848290	-	Caur_2742	-	hypothetical protein
2688	 47.23	-2	3669155..3670507	+	450	163848291	-	Caur_2743	-	stage II sporulation E family protein
2689	 59.98	0	3670512..3671423	+	303	163848292	-	Caur_2744	-	hypothetical protein
2690	 58.36	0	3671406..3672368	-	320	163848293	-	Caur_2745	-	cobalamin synthesis protein P47K
2691	 59.42	0	3672352..3673482	-	376	163848294	-	Caur_2746	-	secreted hydrolase-like protein
2692	 59.35	0	3673618..3674082	+	154	163848295	-	Caur_2747	-	hypothetical protein
2693	 59.94	0	3674221..3675216	-	331	163848296	-	Caur_2748	-	dihydroorotase
2694	 57.02	0	3675213..3676145	-	310	163848297	-	Caur_2749	-	hypothetical protein
2695	 60.27	0	3676737..3679487	-	916	163848298	-	Caur_2750	-	chromosome segregation ATPase-like protein
2696	 58.39	0	3679609..3680502	-	297	163848299	-	Caur_2751	-	hypothetical protein
2697	 54.50	0	3680744..3681532	-	262	163848300	-	Caur_2752	-	hypothetical protein
2698	 55.19	0	3681967..3683952	+	661	163848301	-	Caur_2753	-	GAF domain-containing protein
2699	 53.57	0	3683962..3685404	+	480	163848302	-	Caur_2754	-	PAS sensor protein
2700	 55.42	0	3685397..3686143	+	248	163848303	-	Caur_2755	-	ATPase domain-containing protein
2701	 55.56	0	3686243..3689005	+	920	163848304	-	Caur_2756	-	ATPase domain-containing protein
2702	 58.19	0	3688989..3691052	+	687	163848305	-	Caur_2757	-	hypothetical protein
2703	 57.51	0	3690929..3691354	-	141	163848306	-	Caur_2758	-	hypothetical protein
2704	 57.74	0	3691411..3694413	-	1000	163848307	-	Caur_2759	-	leucyl-tRNA synthetase
2705	 52.00	-1	3695510..3695734	+	74	163848308	-	Caur_2760	-	hypothetical protein
2706	 61.11	+1	3696207..3697268	-	353	163848309	-	Caur_2761	-	hydrogenase expression/formation protein HypE
2707	 59.86	0	3697325..3698440	-	371	163848310	-	Caur_2762	-	hydrogenase expression/formation protein HypD
2708	 55.31	0	3698427..3698699	-	90	163848311	-	Caur_2763	-	hydrogenase assembly chaperone hypC/hupF
2709	 61.99	+1	3698793..3699905	-	370	163848312	-	Caur_2764	-	NHL repeat-containing protein
2710	 59.86	0	3699902..3700783	-	293	163848313	-	Caur_2765	-	Rieske (2Fe-2S) domain-containing protein
2711	 55.92	0	3700773..3701135	-	120	163848314	-	Caur_2766	-	hypothetical protein
2712	 61.71	+1	3701107..3702357	-	416	163848315	-	Caur_2767	-	tetratricopeptide TPR_4
2713	 60.26	0	3702354..3702665	-	103	163848316	-	Caur_2768	-	hydrogenase maturation protease
2714	 61.05	+1	3702646..3703161	-	171	163848317	-	Caur_2769	-	hydrogenase maturation protease
2715	 59.28	0	3703268..3704905	-	545	163848318	-	Caur_2770	-	nickel-dependent hydrogenase large subunit
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.