IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2582	 58.99	0	3518102..3519820	+	572	163848185	-	Caur_2634	-	formate--tetrahydrofolate ligase
2583	 54.21	0	3520095..3523160	+	1021	163848186	-	Caur_2635	-	peptidase S8 and S53 subtilisin kexin sedolisin
2584	 52.55	-1	3523271..3524014	+	247	163848187	-	Caur_2636	-	hypothetical protein
2585	 60.14	0	3524554..3526590	-	678	163848188	-	Caur_2637	-	hypothetical protein
2586	 52.40	-1	3526662..3527348	-	228	163848189	-	Caur_2638	-	regulatory protein LuxR
2587	 53.09	0	3527399..3528532	-	377	163848190	-	Caur_2639	-	DNA polymerase III, beta subunit
2588	 55.03	0	3528987..3529811	+	274	163848191	-	Caur_2640	-	putative 6-pyruvoyl tetrahydropterin synthase
2589	 53.65	0	3529885..3530568	+	227	163848192	-	Caur_2641	-	GTP cyclohydrolase I
2590	 58.33	0	3530749..3531444	+	231	163848193	-	Caur_2642	-	short-chain dehydrogenase/reductase SDR
2591	 55.34	0	3532162..3535005	+	947	163848194	-	Caur_2643	-	excinuclease ABC, A subunit
2592	 53.24	0	3535126..3536622	+	498	163848195	-	Caur_2644	-	N-acetylglucosamine-1-phosphate uridyltransferase-like protein
2593	 52.70	-1	3536649..3537593	+	314	163848196	-	Caur_2645	-	response regulator receiver
2594	 54.56	0	3537699..3546047	+	2782	163848197	-	Caur_2646	-	PAS sensor protein
2595	 53.76	0	3546044..3546880	+	278	163848198	-	Caur_2647	-	alpha/beta hydrolase fold-containing protein
2596	 59.27	0	3547447..3550218	-	923	163848199	-	Caur_2648	-	valyl-tRNA synthetase
2597	 54.43	0	3550381..3551091	+	236	163848200	-	Caur_2649	-	ABC transporter related
2598	 60.55	+1	3552434..3553969	-	511	163848201	-	Caur_2650	-	forkhead-associated protein
2599	 56.49	0	3554253..3555500	-	415	163848202	-	Caur_2651	-	von Willebrand factor type A
2600	 57.02	0	3555505..3556800	-	431	163848203	-	Caur_2652	-	protein kinase
2601	 56.00	0	3556797..3558521	-	574	163848204	-	Caur_2653	-	protein phosphatase 2C-like protein
2602	 57.88	0	3558532..3559794	-	420	163848205	-	Caur_2654	-	protein phosphatase 2C-like protein
2603	 56.96	0	3559998..3562592	+	864	163848206	-	Caur_2655	-	ABC transporter related
2604	 55.31	0	3562833..3563378	+	181	163848207	-	Caur_2656	-	helix-turn-helix domain-containing protein
2605	 56.43	0	3563398..3564696	+	432	163848208	-	Caur_2657	-	hypothetical protein
2606	 57.35	0	3565156..3565713	-	185	163848209	-	Caur_2658	-	metal dependent phophohydrolase
2607	 52.78	-1	3565905..3566624	+	239	163848210	-	Caur_2659	-	short-chain dehydrogenase/reductase SDR
2608	 55.64	0	3566642..3567457	+	271	163848211	-	Caur_2660	-	methyltransferase type 11
2609	 56.60	0	3567435..3567752	+	105	163848212	-	Caur_2661	-	hypothetical protein
2610	 59.64	0	3567749..3568687	-	312	163848213	-	Caur_2662	-	1-phosphofructokinase
2611	 57.89	0	3568784..3570037	-	417	163848214	-	Caur_2663	-	acyl-CoA dehydrogenase domain-containing protein
2612	 55.47	0	3570368..3571555	+	395	163848215	-	Caur_2664	-	iron-containing alcohol dehydrogenase
2613	 55.47	0	3572188..3572589	-	133	163848216	-	Caur_2665	-	ATPase domain-containing protein
2614	 49.35	-2	3572576..3572962	-	128	163848217	-	Caur_2666	-	Sulfate transporter/antisigma-factor antagonist STAS
2615	 52.46	-1	3573014..3573724	-	236	163848218	-	Caur_2667	-	phosphatidate cytidylyltransferase
2616	 56.29	0	3573933..3575204	+	423	163848219	-	Caur_2668	-	type I phosphodiesterase/nucleotide pyrophosphatase
2617	 57.97	0	3575326..3576888	+	520	163848220	-	Caur_2669	-	hypothetical protein
2618	 61.86	+1	3576917..3577228	+	103	163848221	-	Caur_2670	-	DsbA oxidoreductase
2619	 56.94	0	3577247..3577678	+	143	163848222	-	Caur_2671	-	DsbA oxidoreductase
2620	 54.84	0	3578924..3579388	-	154	163848223	-	Caur_2673	-	regulatory protein MarR
2621	 59.19	0	3579887..3581197	+	436	163848224	-	Caur_2674	-	extracellular solute-binding protein
2622	 53.50	0	3581317..3582258	+	313	163848225	-	Caur_2675	-	binding-protein-dependent transport systems inner membrane component
2623	 54.05	0	3582271..3583110	+	279	163848226	-	Caur_2676	-	binding-protein-dependent transport systems inner membrane component
2624	 59.04	0	3583120..3584181	+	353	163848227	-	Caur_2677	-	galactose-1-phosphate uridylyltransferase
2625	 53.62	0	3584415..3585173	+	252	163848228	-	Caur_2678	-	hypothetical protein
2626	 51.98	-1	3585243..3585671	+	142	163848229	-	Caur_2679	-	hypothetical protein
2627	 56.35	0	3586399..3587658	+	419	163848230	-	Caur_2680	-	von Willebrand factor type A
2628	 56.60	0	3587660..3588424	+	254	163848231	-	Caur_2681	-	stationary-phase survival protein SurE
2629	 59.66	0	3588398..3589153	-	251	163848232	-	Caur_2682	-	hypothetical protein
2630	 59.10	0	3589355..3589909	-	184	163848233	-	Caur_2683	-	hypothetical protein
2631	 57.54	0	3590004..3591011	-	335	163848234	-	Caur_2684	-	squalene/phytoene synthase
2632	 55.59	0	3591137..3592084	-	315	163848235	-	Caur_2685	-	regulatory protein MerR
2633	 57.85	0	3592327..3593301	+	324	163848236	-	Caur_2686	-	NAD-dependent epimerase/dehydratase
2634	 55.88	0	3593412..3594524	+	370	163848237	-	Caur_2687	-	nucleotidyl transferase
2635	 54.76	0	3594996..3595415	-	139	163848238	-	Caur_2688	-	large conductance mechanosensitive channel protein
2636	 59.00	0	3595647..3595946	+	99	163848239	-	Caur_2689	-	hypothetical protein
2637	 55.19	0	3595972..3596433	+	153	163848240	-	Caur_2690	-	UspA domain-containing protein
2638	 57.29	0	3596823..3598934	+	703	163848241	-	Caur_2691	-	small GTP-binding protein
2639	 57.67	0	3599651..3602851	+	1066	163848242	-	Caur_2692	-	isoleucyl-tRNA synthetase
2640	 57.80	0	3603157..3604386	+	409	163848243	-	Caur_2693	-	2-alkenal reductase
2641	 60.55	+1	3604486..3605793	+	435	163848244	-	Caur_2694	-	histidinol dehydrogenase
2642	 48.45	-2	3605795..3606052	+	85	163848245	-	Caur_2695	-	protein of unknown function YGGT
2643	 55.73	0	3606215..3607888	+	557	163848246	-	Caur_2696	-	spermidine synthase-like protein
2644	 57.20	0	3608211..3608717	+	168	163848247	-	Caur_2697	-	HNH endonuclease
2645	 56.75	0	3608704..3609066	+	120	163848248	-	Caur_2698	-	hypothetical protein
2646	 61.20	+1	3609808..3613377	+	1189	163848249	-	Caur_2699	-	helicase domain-containing protein
2647	 62.35	+1	3613374..3616871	+	1165	163848250	-	Caur_2700	-	hypothetical protein
2648	 54.82	0	3616887..3618287	+	466	163848251	-	Caur_2701	-	hypothetical protein
2649	 51.03	-1	3618287..3618772	+	161	163848252	-	Caur_2702	-	hypothetical protein
2650	 61.68	+1	3618800..3622126	+	1108	163848253	-	Caur_2703	-	AAA family ATPase
2651	 61.97	+1	3622494..3623408	-	304	163848254	-	Caur_2704	-	diacylglycerol kinase catalytic region
2652	 63.31	+1	3623434..3624624	-	396	163848255	-	Caur_2705	-	tryptophan synthase subunit beta
2653	 57.18	0	3624731..3625078	-	115	163848256	-	Caur_2706	-	hypothetical protein
2654	 57.76	0	3625135..3626628	-	497	163848257	-	Caur_2707	-	metallophosphoesterase
2655	 62.84	+1	3626749..3627402	-	217	163848258	-	Caur_2708	-	phosphoribosylanthranilate isomerase
2656	 60.30	0	3627395..3629404	-	669	163848259	-	Caur_2709	-	hypothetical protein
2657	 60.74	+1	3629655..3630632	-	325	163848260	-	Caur_2710	-	glycosyl transferase family protein
2658	 53.90	0	3630698..3631441	-	247	163848261	-	Caur_2711	-	hypothetical protein
2659	 53.74	0	3631438..3632172	-	244	163848262	-	Caur_2712	-	ABC-2 type transporter
2660	 55.75	0	3632452..3633303	-	283	163848263	-	Caur_2713	-	ABC transporter related
2661	 55.45	0	3633342..3633992	-	216	163848264	-	Caur_2714	-	regulatory protein TetR
2662	 56.52	0	3634003..3634209	-	68	163848265	-	Caur_2715	-	hypothetical protein
2663	 60.25	0	3634500..3635294	+	264	163848266	-	Caur_2716	-	inositol-phosphate phosphatase
2664	 57.28	0	3635305..3636369	+	354	163848267	-	Caur_2717	-	radical SAM domain-containing protein
2665	 57.62	0	3636324..3636986	-	220	163848268	-	Caur_2718	-	ribosomal-protein-alanine acetyltransferase
2666	 55.80	0	3637085..3637912	-	275	163848269	-	Caur_2719	-	hypothetical protein
2667	 63.87	+1	3638867..3639652	-	261	163848270	-	Caur_2720	-	hypothetical protein
2668	 63.49	+1	3639972..3640757	-	261	163848271	-	Caur_2721	-	hypothetical protein
2669	 53.56	0	3641181..3642713	+	510	163848272	-	Caur_2722	-	YmdA/YtgF protein
2670	 59.70	0	3642839..3643240	+	133	163848273	-	Caur_2723	-	stage V sporulation protein S
2671	 56.30	0	3644235..3646076	+	613	163848274	-	Caur_2724	-	protein of unknown function DUF294 nucleotidyltransferase putative
2672	 56.94	0	3646085..3646783	+	232	163848275	-	Caur_2725	-	DNA polymerase III, epsilon subunit
2673	 57.11	0	3647235..3649076	+	613	163848276	-	Caur_2726	-	citrate transporter
2674	 58.01	0	3649083..3650492	-	469	163848277	-	Caur_2727	-	glycosyl hydrolase family 32 protein
2675	 56.46	0	3650897..3651817	-	306	163848278	-	Caur_2728	-	binding-protein-dependent transport systems inner membrane component
2676	 52.42	-1	3651814..3652950	-	378	163848279	-	Caur_2729	-	binding-protein-dependent transport systems inner membrane component
2677	 56.53	0	3653047..3654378	-	443	163848280	-	Caur_2730	-	extracellular solute-binding protein
2678	 55.33	0	3654487..3655518	-	343	163848281	-	Caur_2731	-	alanine racemase
2679	 57.05	0	3656831..3657880	-	349	163848282	-	Caur_2732	-	parB-like partition protein
2680	 58.43	0	3658891..3659631	+	246	163848283	-	Caur_2733	-	short-chain dehydrogenase/reductase SDR
2681	 58.06	0	3659734..3660813	+	359	163848284	-	Caur_2734	-	Sulfate transporter/antisigma-factor antagonist STAS
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.