IslandPathversion 1.0

IslandPath Analysis: Chloroflexus aurantiacus J-10-fl



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69
Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2529	 44.04	-2	3441724..3442134	-	136	163848132	-	Caur_2581	-	blue (type1) copper domain-containing protein
2530	 52.86	-1	3443002..3443298	-	98	163848133	-	Caur_2582	-	hypothetical protein
2531	 53.57	0	3443295..3444416	-	373	163848134	-	Caur_2583	-	hypothetical protein
2532	 56.09	0	3444730..3445164	-	144	163848135	-	Caur_2584	-	hypothetical protein
2533	 57.25	0	3445639..3447156	-	505	163848136	-	Caur_2585	-	threonine dehydratase
2534	 53.95	0	3447143..3448912	-	589	163848137	-	Caur_2586	-	diguanylate cyclase
2535	 58.85	0	3449089..3450162	-	357	163848138	-	Caur_2587	-	threonine aldolase
2536	 56.04	0	3450569..3451255	+	228	163848139	-	Caur_2588	-	Mg-protoporphyrin IX methyl transferase
2537	 56.55	0	3451292..3451627	+	111	163848140	-	Caur_2589	-	hypothetical protein
2538	 54.34	0	3451693..3452820	+	375	163848141	-	Caur_2590	-	magnesium-protoporphyrin IX monomethyl ester cyclase
2539	 60.38	0	3452941..3456678	+	1245	163848142	-	Caur_2591	-	magnesium chelatase
2540	 56.81	0	3456675..3457973	+	432	163848143	-	Caur_2592	-	PUCC protein
2541	 58.77	0	3458154..3459458	+	434	163848144	-	Caur_2593	-	glutamyl-tRNA reductase
2542	 61.54	+1	3459467..3460441	+	324	163848145	-	Caur_2594	-	porphobilinogen deaminase
2543	 60.56	+1	3460438..3461190	+	250	163848146	-	Caur_2595	-	uroporphyrinogen III synthase HEM4
2544	 60.15	0	3461195..3462253	+	352	163848147	-	Caur_2596	-	delta-aminolevulinic acid dehydratase
2545	 57.40	0	3462507..3463574	+	355	163848148	-	Caur_2597	-	uroporphyrinogen decarboxylase
2546	 61.04	+1	3463574..3464905	+	443	163848149	-	Caur_2598	-	glutamate-1-semialdehyde-2,1-aminomutase
2547	 57.54	0	3464917..3465825	+	302	163848150	-	Caur_2599	-	coproporphyrinogen III oxidase
2548	 56.44	0	3465997..3467805	-	602	163848151	-	Caur_2600	-	oligoendopeptidase F
2549	 60.05	0	3468821..3470029	-	402	163848152	-	Caur_2601	-	major facilitator transporter
2550	 60.25	0	3470046..3471650	-	534	163848153	-	Caur_2602	-	amidohydrolase 3
2551	 57.84	0	3471855..3473111	+	418	163848154	-	Caur_2603	-	hypothetical protein
2552	 57.41	0	3473753..3476128	+	791	163848155	-	Caur_2604	-	peptidase M23B
2553	 50.09	-1	3476370..3477986	+	538	163848156	-	Caur_2605	-	alkaline phosphatase-like protein
2554	 60.58	+1	3478420..3478797	-	125	163848157	-	Caur_2606	-	hypothetical protein
2555	 58.20	0	3478802..3480739	-	645	163848158	-	Caur_2607	-	hypothetical protein
2556	 58.12	0	3480736..3482256	-	506	163848159	-	Caur_2608	-	hypothetical protein
2557	 54.43	0	3482313..3482639	-	108	163848160	-	Caur_2609	-	ATP-dependent Clp protease adaptor protein ClpS
2558	 58.46	0	3482700..3485417	-	905	163848161	-	Caur_2610	-	von Willebrand factor type A
2559	 55.55	0	3485531..3489505	-	1324	163848162	-	Caur_2611	-	stage II sporulation E family protein
2560	 57.68	0	3489502..3490491	-	329	163848163	-	Caur_2612	-	folate-binding protein YgfZ
2561	 58.61	0	3490539..3491879	-	446	163848164	-	Caur_2613	-	cytochrome P450
2562	 57.70	0	3492972..3496631	+	1219	163848165	-	Caur_2614	-	short-chain dehydrogenase/reductase SDR
2563	 57.16	0	3496772..3497476	+	234	163848166	-	Caur_2615	-	LmbE family protein
2564	 57.47	0	3497808..3499253	+	481	163848167	-	Caur_2616	-	aminotransferase class-III
2565	 59.65	0	3499302..3499757	-	151	163848168	-	Caur_2617	-	hypothetical protein
2566	 56.38	0	3499778..3500224	-	148	163848169	-	Caur_2618	-	hypothetical protein
2567	 53.33	0	3500877..3501386	+	169	163848170	-	Caur_2619	-	GCN5-related N-acetyltransferase
2568	 56.37	0	3501437..3502621	-	394	163848171	-	Caur_2620	-	cyclopropane fatty acyl phospholipid synthase
2569	 56.90	0	3502783..3503253	+	156	163848172	-	Caur_2621	-	regulatory protein MarR
2570	 58.48	0	3503337..3504851	+	504	163848173	-	Caur_2622	-	ComEC/Rec2-related protein
2571	 60.78	+1	3504866..3505426	-	186	163848174	-	Caur_2623	-	hypothetical protein
2572	 59.26	0	3505739..3507628	+	629	163848175	-	Caur_2624	-	peptidase S9 prolyl oligopeptidase
2573	 58.77	0	3507751..3508776	+	341	163848176	-	Caur_2625	-	ATPase domain-containing protein
2574	 51.05	-1	3508899..3509609	+	236	163848177	-	Caur_2626	-	response regulator receiver
2575	 50.00	-1	3509942..3510697	+	251	163848178	-	Caur_2627	-	methyltransferase type 11
2576	 56.71	0	3510812..3511474	+	220	163848179	-	Caur_2628	-	dienelactone hydrolase
2577	 58.27	0	3511824..3513323	+	499	163848180	-	Caur_2629	-	GAF domain-containing protein
2578	 55.50	0	3513353..3514624	+	423	163848181	-	Caur_2630	-	peptidase M16 domain-containing protein
2579	 59.40	0	3514634..3515665	+	343	163848182	-	Caur_2631	-	FAD dependent oxidoreductase
2580	 57.12	0	3515676..3516743	+	355	163848183	-	Caur_2632	-	membrane dipeptidase
2581	 61.01	+1	3516809..3518098	+	429	163848184	-	Caur_2633	-	acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
2582	 58.99	0	3518102..3519820	+	572	163848185	-	Caur_2634	-	formate--tetrahydrofolate ligase
2583	 54.21	0	3520095..3523160	+	1021	163848186	-	Caur_2635	-	peptidase S8 and S53 subtilisin kexin sedolisin
2584	 52.55	-1	3523271..3524014	+	247	163848187	-	Caur_2636	-	hypothetical protein
2585	 60.14	0	3524554..3526590	-	678	163848188	-	Caur_2637	-	hypothetical protein
2586	 52.40	-1	3526662..3527348	-	228	163848189	-	Caur_2638	-	regulatory protein LuxR
2587	 53.09	0	3527399..3528532	-	377	163848190	-	Caur_2639	-	DNA polymerase III, beta subunit
2588	 55.03	0	3528987..3529811	+	274	163848191	-	Caur_2640	-	putative 6-pyruvoyl tetrahydropterin synthase
2589	 53.65	0	3529885..3530568	+	227	163848192	-	Caur_2641	-	GTP cyclohydrolase I
2590	 58.33	0	3530749..3531444	+	231	163848193	-	Caur_2642	-	short-chain dehydrogenase/reductase SDR
2591	 55.34	0	3532162..3535005	+	947	163848194	-	Caur_2643	-	excinuclease ABC, A subunit
2592	 53.24	0	3535126..3536622	+	498	163848195	-	Caur_2644	-	N-acetylglucosamine-1-phosphate uridyltransferase-like protein
2593	 52.70	-1	3536649..3537593	+	314	163848196	-	Caur_2645	-	response regulator receiver
2594	 54.56	0	3537699..3546047	+	2782	163848197	-	Caur_2646	-	PAS sensor protein
2595	 53.76	0	3546044..3546880	+	278	163848198	-	Caur_2647	-	alpha/beta hydrolase fold-containing protein
2596	 59.27	0	3547447..3550218	-	923	163848199	-	Caur_2648	-	valyl-tRNA synthetase
2597	 54.43	0	3550381..3551091	+	236	163848200	-	Caur_2649	-	ABC transporter related
2598	 60.55	+1	3552434..3553969	-	511	163848201	-	Caur_2650	-	forkhead-associated protein
2599	 56.49	0	3554253..3555500	-	415	163848202	-	Caur_2651	-	von Willebrand factor type A
2600	 57.02	0	3555505..3556800	-	431	163848203	-	Caur_2652	-	protein kinase
2601	 56.00	0	3556797..3558521	-	574	163848204	-	Caur_2653	-	protein phosphatase 2C-like protein
2602	 57.88	0	3558532..3559794	-	420	163848205	-	Caur_2654	-	protein phosphatase 2C-like protein
2603	 56.96	0	3559998..3562592	+	864	163848206	-	Caur_2655	-	ABC transporter related
2604	 55.31	0	3562833..3563378	+	181	163848207	-	Caur_2656	-	helix-turn-helix domain-containing protein
2605	 56.43	0	3563398..3564696	+	432	163848208	-	Caur_2657	-	hypothetical protein
2606	 57.35	0	3565156..3565713	-	185	163848209	-	Caur_2658	-	metal dependent phophohydrolase
2607	 52.78	-1	3565905..3566624	+	239	163848210	-	Caur_2659	-	short-chain dehydrogenase/reductase SDR
2608	 55.64	0	3566642..3567457	+	271	163848211	-	Caur_2660	-	methyltransferase type 11
2609	 56.60	0	3567435..3567752	+	105	163848212	-	Caur_2661	-	hypothetical protein
2610	 59.64	0	3567749..3568687	-	312	163848213	-	Caur_2662	-	1-phosphofructokinase
2611	 57.89	0	3568784..3570037	-	417	163848214	-	Caur_2663	-	acyl-CoA dehydrogenase domain-containing protein
2612	 55.47	0	3570368..3571555	+	395	163848215	-	Caur_2664	-	iron-containing alcohol dehydrogenase
2613	 55.47	0	3572188..3572589	-	133	163848216	-	Caur_2665	-	ATPase domain-containing protein
2614	 49.35	-2	3572576..3572962	-	128	163848217	-	Caur_2666	-	Sulfate transporter/antisigma-factor antagonist STAS
2615	 52.46	-1	3573014..3573724	-	236	163848218	-	Caur_2667	-	phosphatidate cytidylyltransferase
2616	 56.29	0	3573933..3575204	+	423	163848219	-	Caur_2668	-	type I phosphodiesterase/nucleotide pyrophosphatase
2617	 57.97	0	3575326..3576888	+	520	163848220	-	Caur_2669	-	hypothetical protein
2618	 61.86	+1	3576917..3577228	+	103	163848221	-	Caur_2670	-	DsbA oxidoreductase
2619	 56.94	0	3577247..3577678	+	143	163848222	-	Caur_2671	-	DsbA oxidoreductase
2620	 54.84	0	3578924..3579388	-	154	163848223	-	Caur_2673	-	regulatory protein MarR
2621	 59.19	0	3579887..3581197	+	436	163848224	-	Caur_2674	-	extracellular solute-binding protein
2622	 53.50	0	3581317..3582258	+	313	163848225	-	Caur_2675	-	binding-protein-dependent transport systems inner membrane component
2623	 54.05	0	3582271..3583110	+	279	163848226	-	Caur_2676	-	binding-protein-dependent transport systems inner membrane component
2624	 59.04	0	3583120..3584181	+	353	163848227	-	Caur_2677	-	galactose-1-phosphate uridylyltransferase
2625	 53.62	0	3584415..3585173	+	252	163848228	-	Caur_2678	-	hypothetical protein
2626	 51.98	-1	3585243..3585671	+	142	163848229	-	Caur_2679	-	hypothetical protein
2627	 56.35	0	3586399..3587658	+	419	163848230	-	Caur_2680	-	von Willebrand factor type A
2628	 56.60	0	3587660..3588424	+	254	163848231	-	Caur_2681	-	stationary-phase survival protein SurE
56.76	MEAN

3.69	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.